Molecular Systems Biology

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  • 2023 | Journal Article
    ​ ​A toolbox for systematic discovery of stable and transient protein interactors in baker's yeast​
    Fenech, E. J.; Cohen, N.; Kupervaser, M.; Gazi, Z. & Schuldiner, M.​ (2023) 
    Molecular Systems Biology, 19(2) art. e11084​.​ DOI: https://doi.org/10.15252/msb.202211084 
    ​Details  DOI  PMID  PMC 
  • 2023 | Journal Article
    ​ ​Protein complexes in cells by AI ‐assisted structural proteomics​
    O'Reilly, F. J; Graziadei, A.; Forbrig, C.; Bremenkamp, R.; Charles, K.; Lenz, S. & Elfmann, C. et al.​ (2023) 
    Molecular Systems Biology,.​ DOI: https://doi.org/10.15252/msb.202311544 
    ​Details  DOI 
  • 2022 | Journal Article
    ​ ​Probing cell identity hierarchies by fate titration and collision during direct reprogramming​
    Hersbach, B. A.; Fischer, D. S.; Masserdotti, G.; Deeksha, D.; Mojžišová, K.; Waltzhöni, T. & Rodriguez-Terrones, D. et al.​ (2022) 
    Molecular Systems Biology, 18(9) art. e11129​.​ DOI: https://doi.org/10.15252/msb.202211129 
    ​Details  DOI  PMID  PMC 
  • 2022 | Journal Article
    ​ ​Large‐scale analysis of Drosophila core promoter function using synthetic promoters​
    Qi, Z.; Jung, C.; Bandilla, P.; Ludwig, C.; Heron, M.; Sophie Kiesel, A. & Museridze, M. et al.​ (2022) 
    Molecular Systems Biology, 18(2).​ DOI: https://doi.org/10.15252/msb.20209816 
    ​Details  DOI 
  • 2022 | Journal Article
    ​ ​Distinct transcription kinetics of pluripotent cell states​
    Shao, R.; Kumar, B.; Lidschreiber, K.; Lidschreiber, M.; Cramer, P.   & Elsässer, S. J​ (2022) 
    Molecular Systems Biology, 18(1).​ DOI: https://doi.org/10.15252/msb.202110407 
    ​Details  DOI 
  • 2021 | Journal Article
    ​ ​Identification of covalent modifications regulating immune signaling complex composition and phenotype​
    Frauenstein, A.; Ebner, S.; Hansen, F. M.; Sinha, A.; Phulphagar, K.; Swatek, K. & Hornburg, D. et al.​ (2021) 
    Molecular Systems Biology, 17(7) art. e10125​.​ DOI: https://doi.org/10.15252/msb.202010125 
    ​Details  DOI  PMID  PMC 
  • 2021 | Journal Article | Research Paper | 
    ​ ​HMGB1 coordinates SASP‐related chromatin folding and RNA homeostasis on the path to senescence​
    Sofiadis, K.; Josipovic, N.; Nikolic, M.; Kargapolova, Y.; Übelmesser, N.; Varamogianni‐Mamatsi, V. & Zirkel, A. et al.​ (2021) 
    Molecular Systems Biology, 17(6).​ DOI: https://doi.org/10.15252/msb.20209760 
    ​Details  DOI 
  • 2021 | Journal Article | Research Paper | 
    ​ ​Transcriptionally active enhancers in human cancer cells​
    Lidschreiber, K.; Jung, L. A; von der Emde, H.; Dave, K.; Taipale, J.; Cramer, P.   & Lidschreiber, M.​ (2021) 
    Molecular Systems Biology, 17(1) art. e9873​.​ DOI: https://doi.org/10.15252/msb.20209873 
    ​Details  DOI  PMID  PMC 
  • 2018 | Journal Article
    ​ ​Forces driving the three-dimensional folding of eukaryotic genomes​
    Rada-Iglesias, A.; Grosveld, F. G. & Papantonis, A. ​ (2018) 
    Molecular Systems Biology, 14(6) art. e8214​.​ DOI: https://doi.org/10.15252/msb.20188214 
    ​Details  DOI  PMID  PMC 
  • 2017 | Journal Article
    ​ ​TT‐seq captures enhancer landscapes immediately after T‐cell stimulation​
    Michel, M.; Demel, C.; Zacher, B.; Schwalb, B.; Krebs, S.; Blum, H. & Gagneur, J. et al.​ (2017) 
    Molecular Systems Biology, 13(3) art. 920​.​ DOI: https://doi.org/10.15252/msb.20167507 
    ​Details  DOI 
  • 2017 | Journal Article
    ​ ​The landscape of human mutually exclusive splicing​
    Hatje, K.; Rahman, R.-U. ; Vidal, R. O. ; Simm, D. ; Hammesfahr, B.; Bansal, V. & Rajput, A.  et al.​ (2017) 
    Molecular systems biology, 13(12) art. 959​.​ DOI: https://doi.org/10.15252/msb.20177728 
    ​Details  DOI  PMID  PMC 
  • 2016 | Journal Article
    ​ ​Exploiting native forces to capture chromosome conformation in mammalian cell nuclei​
    Brant, L.; Georgomanolis, T.; Nikolic, M.; Brackley, C. A.; Kolovos, P.; van Ijcken, W. & Grosveld, F. G. et al.​ (2016) 
    Molecular Systems Biology, 12(12) pp. 891​.​ DOI: https://doi.org/10.15252/msb.20167311 
    ​Details  DOI  PMID  PMC 
  • 2016 | Journal Article
    ​ ​Determinants of RNA metabolism in the Schizosaccharomyces pombe genome​
    Eser, P.; Wachutka, L.; Maier, K. C.; Demel, C.; Boroni, M.; Iyer, S. & Cramer, P.  et al.​ (2016) 
    Molecular Systems Biology, 12(2) art. 857​.​ DOI: https://doi.org/10.15252/msb.20156526 
    ​Details  DOI 
  • 2015 | Journal Article | 
    ​ ​Defining a minimal cell: essentiality of small ORFs and ncRNAs in a genome-reduced bacterium.​
    Lluch-Senar, M.; Delgado, J.; Chen, W.-H.; Lloréns-Rico, V.; O'Reilly, F. J.; Wodke, J. A. & Unal, E. B. et al.​ (2015) 
    Molecular systems biology, 11 art. 780​.​ DOI: https://doi.org/10.15252/msb.20145558 
    ​Details  DOI  PMID  PMC 
  • 2014 | Journal Article | Research Paper | 
    ​ ​Annotation of genomics data using bidirectional hidden Markov models unveils variations in Pol II transcription cycle​
    Zacher, B.; Lidschreiber, M.; Cramer, P. ; Gagneur, J. & Tresch, A.​ (2014) 
    Molecular Systems Biology, 10(12) art. 768​.​ DOI: https://doi.org/10.15252/msb.20145654 
    ​Details  DOI  PMID  PMC  WoS 
  • 2014 | Journal Article | Research Paper | 
    ​ ​Periodic mRNA synthesis and degradation co‐operate during cell cycle gene expression​
    Eser, P.; Demel, C.; Maier, K. C; Schwalb, B.; Pirkl, N.; Martin, D. E & Cramer, P.  et al.​ (2014) 
    Molecular Systems Biology, 10(4) pp. 726​-15​.​ DOI: https://doi.org/10.1002/msb.20140001 
    ​Details  DOI  PMID  PMC  WoS 
  • 2012 | Journal Article | 
    ​ ​Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium​
    van Noort, V.; Seebacher, J.; Bader, S.; Mohammed, S.; Vonkova, I.; Betts, M. J. & Kuehner, S. et al.​ (2012) 
    Molecular Systems Biology, 8 art. 571​.​ DOI: https://doi.org/10.1038/msb.2012.4 
    ​Details  DOI  PMID  PMC  WoS 
  • 2011 | Journal Article
    ​ ​Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega​
    Sievers, F.; Wilm, A.; Dineen, D.; Gibson, T. J; Karplus, K.; Li, W. & Lopez, R. et al.​ (2011) 
    Molecular Systems Biology, 7(1) pp. 539​.​ DOI: https://doi.org/10.1038/msb.2011.75 
    ​Details  DOI 
  • 2011 | Journal Article | Research Paper
    ​ ​Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast​
    Miller, C.; Schwalb, B.; Maier, K. ; Schulz, D.; Duemcke, S.; Zacher, B. & Mayer, A. et al.​ (2011) 
    Molecular Systems Biology, 7 art. 458​.​ DOI: https://doi.org/10.1038/msb.2010.112 
    ​Details  DOI  PMID  PMC  WoS 
  • 2011 | Journal Article | Research Paper
    ​ ​Recycling, clustering, and endocytosis jointly maintain PIN auxin carrier polarity at the plasma membrane​
    Kleine-Vehn, J.; Wabnik, K.; Martinière, A.; Langowski, L.; Willig, K. ; Naramoto, S. & Leitner, J. et al.​ (2011) 
    Molecular Systems Biology, 7(1) art. 540​.​ DOI: https://doi.org/10.1038/msb.2011.72 
    ​Details  DOI  PMID  PMC  WoS 

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