Journal of Chemical Information and Modeling

Publisher
American Chemical Society
 
 
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  • 2025 Journal Article
    ​ ​Valiente PA, Guerra Y, Wolf MG, Pascual I, Rudiño-Piñera E, Florent I, et al. ​Discovery of a Noncompetitive Open-Flap Selective Inhibitor of Plasmepsin II with Antiplasmodial Activity​. ​​Journal of Chemical Information and Modeling. ​2025;​65​(4):​​2038​-2051​. ​doi:10.1021/acs.jcim.4c02059. 
    Details  DOI 
  • 2024 Journal Article
    ​ ​Hahn DF, Gapsys V, de Groot BL, Mobley DL, Tresadern G. ​Current State of Open Source Force Fields in Protein–Ligand Binding Affinity Predictions​. ​​Journal of Chemical Information and Modeling. ​2024;. ​doi:10.1021/acs.jcim.4c00417. 
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  • 2024 Journal Article
    ​ ​de Bruyn E, Dorn AE, Rossetti G, Fernandez C, Outeiro TF, Schulz JB, et al. ​Impact of Phosphorylation on the Physiological Form of Human alpha-Synuclein in Aqueous Solution​. ​​Journal of Chemical Information and Modeling. ​2024;. ​doi:10.1021/acs.jcim.4c01172. 
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  • 2023 Journal Article | 
    ​ ​Uranga J, Mata RA. ​The Catalytic Mechanism of Acetoacetate Decarboxylase: A Detailed Study of Schiff Base Formation, Protonation States, and Their Impact on Catalysis​. ​​Journal of Chemical Information and Modeling. ​2023;​63​(10):​​3118​-3127​. ​doi:10.1021/acs.jcim.3c00241. 
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  • 2023 Journal Article
    ​ ​Gomez A, Erb TJ, Grubmüller H, Vöhringer-Martinez E. ​Conformational Dynamics of the Most Efficient Carboxylase Contributes to Efficient CO 2 Fixation​. ​​Journal of Chemical Information and Modeling. ​2023;​63​(24):​​7807​-7815​. ​doi:10.1021/acs.jcim.3c01447. 
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  • 2022 Journal Article
    ​ ​Gapsys V, Hahn DF, Tresadern G, Mobley DL, Rampp M, de Groot BL. ​Pre-Exascale Computing of Protein–Ligand Binding Free Energies with Open Source Software for Drug Design​. ​​Journal of Chemical Information and Modeling. ​2022;​62​(5):​​1172​-1177​. ​doi:10.1021/acs.jcim.1c01445. 
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  • 2022 Journal Article
    ​ ​Kutzner C, Kniep C, Cherian A, Nordstrom L, Grubmüller H, de Groot BL, et al. ​GROMACS in the Cloud: A Global Supercomputer to Speed Up Alchemical Drug Design​. ​​Journal of Chemical Information and Modeling. ​2022;. ​doi:10.1021/acs.jcim.2c00044. 
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  • 2021 Journal Article | 
    ​ ​Uranga J, Hasecke L, Proppe J, Fingerhut J, Mata RA. ​Theoretical Studies of the Acid–Base Equilibria in a Model Active Site of the Human 20S Proteasome​. ​​Journal of Chemical Information and Modeling. ​2021;​61​(4):​​1942​-1953​. ​doi:10.1021/acs.jcim.0c01459. 
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  • 2019 Journal Article | Research Paper
    ​ ​Abraham M, Apostolov R, Barnoud J, Bauer P, Blau C, Bonvin AMJJ, et al. ​Sharing Data from Molecular Simulations​. ​​Journal of Chemical Information and Modeling. ​2019;​59​(10):​​4093-4099​-4099​. ​doi:10.1021/acs.jcim.9b00665. 
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  • 2018 Journal Article
    ​ ​Fischer A, Don CG, Smieško M. ​Molecular Dynamics Simulations Reveal Structural Differences among Allelic Variants of Membrane-Anchored Cytochrome P450 2D6​. ​​Journal of Chemical Information and Modeling. ​2018;​58​(9):​​1962​-1975​. ​doi:10.1021/acs.jcim.8b00080. 
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  • 2017 Journal Article
    ​ ​Gapsys V, de Groot BL. ​pmx Webserver: A User Friendly Interface for Alchemistry​. ​​Journal of Chemical Information and Modeling. ​2017;​57​(2):​​109​-114​. ​doi:10.1021/acs.jcim.6b00498. 
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  • 2015 Journal Article | Research Paper
    ​ ​Onila I, ten Brink T, Fredriksson K, Codutti L, Mazur A, Griesinger C, et al. ​On-the-Fly Integration of Data from a Spin-Diffusion-Based NMR Experiment into Protein-Ligand Docking​. ​​Journal of Chemical Information and Modeling. ​2015;​55​(9):​​1962​-1972​. ​doi:10.1021/acs.jcim.5b00235. 
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  • 2012 Journal Article
    ​ ​Feldt J, Mata RA, Dieterich JM. ​Atomdroid: A Computational Chemistry Tool for Mobile Platforms​. ​​Journal of Chemical Information and Modeling. ​2012;​52​(4):​​1072​-1078​. ​doi:10.1021/ci2004219. 
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  • 2012 Journal Article
    ​ ​Pratas F, Sousa L, Dieterich JM, Mata RA. ​Computation of Induced Dipoles in Molecular Mechanics Simulations Using Graphics Processors​. ​​Journal of Chemical Information and Modeling. ​2012;​52​(5):​​1159​-1166​. ​doi:10.1021/ci200564x. 
    Details  DOI  PMID  PMC  WoS 

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