Prof. Dr. Rolf Daniel

 
Staff Status
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  • 2024 Journal Article | 
    ​ ​Complete genome sequences of Blautia hydrogenotrophica DSM 10507 T isolated from human feces and Blautia coccoides DSM 935 T isolated from mouse feces​
    Böer, T.; Bengelsdorf, F. R.; Daniel, R.   & Poehlein, A.​ (2024) 
    Microbiology Resource Announcements, art. e00016-24​.​ DOI: https://doi.org/10.1128/mra.00016-24 
    Details  DOI 
  • 2023 Journal Article | 
    ​ ​Brevundimonas and Serratia as host systems for assessing associated environmental viromes and phage diversity by complementary approaches​
    Friedrich, I.; Neubauer, H.; Kuritsyn, A.; Bodenberger, B.; Tskhay, F.; Hartmann, S. & Poehlein, A. et al.​ (2023) 
    Frontiers in Microbiology14.​ DOI: https://doi.org/10.3389/fmicb.2023.1095850 
    Details  DOI 
  • 2023 Journal Article | 
    ​ ​Mechanical weeding enhances ecosystem multifunctionality and profit in industrial oil palm​
    Iddris, N. A. Iddris, Najeeb Al-Amin; Formaglio, G.; Paul, C. ; Groß, V. C. von ; Chen, G.; Angulo-Rubiano, A. & Berkelmann, D.  et al.​ (2023) 
    Nature Sustainability,.​ DOI: https://doi.org/10.1038/s41893-023-01076-x 
    Details  DOI 
  • 2023 Journal Article | 
    ​ ​Metagenome-assembled genomes from particle-associated microbial communities in the mesopelagic zone of the Pacific Ocean​
    Hollensteiner, J.; Schneider, D.; Poehlein, A.; Himmelbach, A. & Daniel, R. ​ (2023) 
    Microbiology Resource Announcements, art. e00614-23​.​ DOI: https://doi.org/10.1128/MRA.00614-23 
    Details  DOI 
  • 2023 Journal Article | 
    ​ ​Pan-genome analysis of six Paracoccus type strain genomes reveal lifestyle traits​
    Hollensteiner, J.; Schneider, D.; Poehlein, A.; Brinkhoff, T. & Daniel, R. ​ (2023) 
    PLoS One18(12) art. e0287947​.​ DOI: https://doi.org/10.1371/journal.pone.0287947 
    Details  DOI 
  • 2022 Journal Article | 
    ​ ​In the battle of the disease: a transcriptomic analysis of European foulbrood-diseased larvae of the Western honey bee (Apis mellifera)​
    Lewkowski, O.; Poehlein, A. ; Daniel, R.   & Erler, S.​ (2022) 
    BMC Genomics23(1) art. 837​.​ DOI: https://doi.org/10.1186/s12864-022-09075-6 
    Details  DOI 
  • 2022 Journal Article | Research Paper | 
    ​ ​Metagenomic Screening for Lipolytic Genes Reveals an Ecology-Clustered Distribution Pattern​
    Lu, M. ; Schneider, D. & Daniel, R. ​ (2022) 
    Frontiers in Microbiology13.​ DOI: https://doi.org/10.3389/fmicb.2022.851969 
    Details  DOI 
  • 2022 Journal Article | 
    ​ ​The carnitine degradation pathway of Acinetobacter baumannii and its role in virulence​
    Breisch, J.; Schumm, C.; Poehlein, A. ; Daniel, R.   & Averhoff, B.​ (2022) 
    Environmental Microbiology24(9) art. 1462-2920.16075​.​ DOI: https://doi.org/10.1111/1462-2920.16075 
    Details  DOI 
  • 2022 Journal Article | Research Paper | 
    ​ ​Thermophilic Composting of Human Feces: Development of Bacterial Community Composition and Antimicrobial Resistance Gene Pool​
    Werner, K. A.; Poehlein, A. ; Schneider, D.; El-Said, K.; Wöhrmann, M.; Linkert, I. & Hübner, T. et al.​ (2022) 
    Frontiers in Microbiology13.​ DOI: https://doi.org/10.3389/fmicb.2022.824834 
    Details  DOI 
  • 2022 Journal Article | Research Paper
    ​ ​Drivers of gut microbiome variation within and between groups of a wild Malagasy primate​
    Rudolph, K.; Schneider, D.; Fichtel, C. ; Daniel, R. ; Heistermann, M.   & Kappeler, P. M. ​ (2022) 
    Microbiome10(1) art. 28​.​ DOI: https://doi.org/10.1186/s40168-021-01223-6 
    Details  DOI 
  • 2022 Journal Article
    ​ ​Reclassification of Clostridium aurantibutyricum Hellinger 1944 and Clostridium roseum (ex McCoy and McClung 1935) Cato et al. 1988​
    Schoch, T.; Höfele, F.; Odeh, H.; Winter, L.-M.; Stöferle, S.; Karl, M. & Bengelsdorf, F. et al.​ (2022) 
    International Journal of Systematic and Evolutionary Microbiology72(10).​ DOI: https://doi.org/10.1099/ijsem.0.005589 
    Details  DOI 
  • 2022 Preprint | 
    ​ ​Landscape heterogeneity and soil biota are central to multi-taxa diversity for landscape restoration​
    Montoya-Sánchez, V.; Kreft, H. ; Arimond, I.; Ballauff, J.; Berkelmann, D. ; Brambach, F.  & Daniel, R.  et al.​ (2022). DOI: https://doi.org/10.1101/2022.10.31.514517 
    Details  DOI 
  • 2022 Journal Article | Research Paper | 
    ​ ​Early Effects of Fertilizer and Herbicide Reduction on Root-Associated Biota in Oil Palm Plantations​
    Ryadin, A. R.; Janz, D. ; Schneider, D.; Tjoa, A.; Irawan, B.; Daniel, R.   & Polle, A. ​ (2022) 
    Agronomy12(1) art. 199​.​ DOI: https://doi.org/10.3390/agronomy12010199 
    Details  DOI 
  • 2022 Journal Article | Research Paper | 
    ​ ​Dietary shifts and social interactions drive temporal fluctuations of the gut microbiome from wild redfronted lemurs​
    Murillo, T.; Schneider, D.; Fichtel, C.   & Daniel, R. ​ (2022) 
    ISME Communications2(1).​ DOI: https://doi.org/10.1038/s43705-021-00086-0 
    Details  DOI 
  • 2022 Journal Article | Research Paper | 
    ​ ​DNA- and RNA-based bacterial communities and geochemical zonation under changing sediment porewater dynamics on the Aldabra Atoll​
    von Hoyningen-Huene, A. J. E.; Schneider, D.; Fussmann, D.; Reimer, A. ; Arp, G.   & Daniel, R. ​ (2022) 
    Scientific Reports12(1) art. 4257​.​ DOI: https://doi.org/10.1038/s41598-022-07980-0 
    Details  DOI 
  • 2022 Journal Article | Research Paper
    ​ ​Decoupling of Pore Water Chemistry, Bacterial Community Profiles, and Carbonate Mud Diagenesis in a Land-Locked Pool on Aldabra (Seychelles, Indian Ocean)​
    Fussmann, D.; von Hoyningen-Huene, A. J. E.; Reimer, A. ; Schneider, D.; Karius, V. ; Riechelmann, S. & Pederson, C. et al.​ (2022) 
    Geomicrobiology Journal, pp. 1​-19​.​ DOI: https://doi.org/10.1080/01490451.2022.2070689 
    Details  DOI 
  • 2022 Journal Article | 
    ​ ​Bacteria-plant interactions synergistically enhance biodegradation of diesel fuel hydrocarbons​
    Eze, M. O.; Thiel, V. ; Hose, G. C.; George, S. C. & Daniel, R. ​ (2022) 
    Communications Earth & Environment3(1).​ DOI: https://doi.org/10.1038/s43247-022-00526-2 
    Details  DOI 
  • 2022 Journal Article | Research Paper | 
    ​ ​Native Cultivable Bacteria from the Blueberry Microbiome as Novel Potential Biocontrol Agents​
    Chacón, F. I.; Sineli, P. E.; Mansilla, F. I.; Pereyra, M. M.; Diaz, M. A.; Volentini, S. I. & Poehlein, A.  et al.​ (2022) 
    Microorganisms10(5) pp. 969​.​ DOI: https://doi.org/10.3390/microorganisms10050969 
    Details  DOI 
  • 2022 Journal Article | Research Paper | 
    ​ ​Transcriptional Landscape of Ectomycorrhizal Fungi and Their Host Provides Insight into N Uptake from Forest Soil​
    Rivera Pérez, C. A.; Janz, D. ; Schneider, D.; Daniel, R.   & Polle, A. ​ (2022) 
    mSystems7(1).​ DOI: https://doi.org/10.1128/mSystems.00957-21 
    Details  DOI 
  • 2021 Journal Article | 
    ​ ​Living in a Puddle of Mud: Isolation and Characterization of Two Novel Caulobacteraceae Strains Brevundimonas pondensis sp. nov. and Brevundimonas goettingensis sp. nov.​
    Friedrich, I.; Klassen, A.; Neubauer, H.; Schneider, D.; Hertel, R. & Daniel, R. ​ (2021) 
    Applied Microbiology1(1).​ DOI: https://doi.org/10.3390/applmicrobiol1010005 
    Details  DOI 
  • 2021 Journal Article
    ​ ​Lactate metabolism in strictly anaerobic microorganisms with a soluble NAD + ‐dependent l ‐lactate dehydrogenase​
    Rosenbaum, F. P.; Poehlein, A. ; Egelkamp, R.; Daniel, R. ; Harder, S.; Schlüter, H. & Schoelmerich, M. C.​ (2021) 
    Environmental Microbiology, art. 1462-2920.15657​.​ DOI: https://doi.org/10.1111/1462-2920.15657 
    Details  DOI 
  • 2021 Journal Article | Research Paper | 
    ​ ​A Novel Carboxylesterase Derived from a Compost Metagenome Exhibiting High Stability and Activity towards High Salinity​
    Lu, M.   & Daniel, R. ​ (2021) 
    Genes12(1) pp. 122​.​ DOI: https://doi.org/10.3390/genes12010122 
    Details  DOI 
  • 2021 Journal Article | Research Paper | 
    ​ ​Down in the pond: Isolation and characterization of a new Serratia marcescens strain (LVF3) from the surface water near frog’s lettuce (Groenlandia densa)​
    Friedrich, I.; Bodenberger, B.; Neubauer, H.; Hertel, R. & Daniel, R. ​ (2021) 
    PLoS One16(11) art. e0259673​.​ DOI: https://doi.org/10.1371/journal.pone.0259673 
    Details  DOI 
  • 2021 Journal Article | Research Paper | 
    ​ ​Pontibacillus sp. ALD_SL1 and Psychroflexus sp. ALD_RP9, two novel moderately halophilic bacteria isolated from sediment and water from the Aldabra Atoll, Seychelles​
    von Hoyningen-Huene, A. J. E.; Schlotthauer, T. J.; Schneider, D.; Poehlein, A.   & Daniel, R. ​ (2021) 
    PLoS One16(8) pp. e0256639​.​ DOI: https://doi.org/10.1371/journal.pone.0256639 
    Details  DOI 
  • 2021 Journal Article
    ​ ​A Bacillus subtilis   Δ pdxT mutant suppresses vitamin B6 limitation by acquiring mutations enhancing pdxS gene dosage and ammonium assimilation​
    Richts, B.; Lentes, S.; Poehlein, A. ; Daniel, R.   & Commichau, F. M. ​ (2021) 
    Environmental Microbiology Reports13(2) pp. 218​-233​.​ DOI: https://doi.org/10.1111/1758-2229.12936 
    Details  DOI 
  • 2021 Journal Article | Research Paper | 
    ​ ​Essentiality of c-di-AMP in Bacillus subtilis: Bypassing mutations converge in potassium and glutamate homeostasis​
    Krüger, L.; Herzberg, C.; Rath, H.; Pedreira, T.; Ischebeck, T. ; Poehlein, A.   & Gundlach, J. et al.​ (2021) 
    PLoS Genetics17(1) art. e1009092​.​ DOI: https://doi.org/10.1371/journal.pgen.1009092 
    Details  DOI 
  • 2020 Journal Article | Erratum
    ​ ​Corrigendum: Sphingomonas jeddahensis sp. nov., isolated from Saudi Arabian desert soil​
    Wübbeler, J. H.; Oppermann-Sanio, F. B.; Ockenfels, A.; Röttig, A.; Osthaar-Ebker, A.; Verbarg, S. & Poehlein, A.  et al.​ (2020) 
    International Journal of Systematic and Evolutionary Microbiology70(4) pp. 2955​-2955​.​ DOI: https://doi.org/10.1099/ijsem.0.004039 
    Details  DOI 
  • 2020 Journal Article
    ​ ​Caproicibacter fermentans gen. nov., sp. nov., a new caproate-producing bacterium and emended description of the genus Caproiciproducens​
    Flaiz, M.; Baur, T.; Brahner, S.; Poehlein, A. ; Daniel, R.   & Bengelsdorf, F. R.​ (2020) 
    International Journal of Systematic and Evolutionary Microbiology70(7) pp. 4269​-4279​.​ DOI: https://doi.org/10.1099/ijsem.0.004283 
    Details  DOI 
  • 2020 Journal Article | Research Paper | 
    ​ ​Legacy Effects Overshadow Tree Diversity Effects on Soil Fungal Communities in Oil Palm-Enrichment Plantations​
    Ballauff, J.; Zemp, D. C.; Schneider, D.; Irawan, B.; Daniel, R.   & Polle, A. ​ (2020) 
    Microorganisms8(10) pp. 1577​.​ DOI: https://doi.org/10.3390/microorganisms8101577 
    Details  DOI 
  • 2020 Journal Article | 
    ​ ​Soil and root nutrient chemistry structure root‐associated fungal assemblages in temperate forests​
    Nguyen, D. Q.; Schneider, D.; Brinkmann, N. ; Song, B. ; Janz, D. ; Schöning, I. & Daniel, R.  et al.​ (2020) 
    Environmental Microbiology22(8) pp. 3081​-3095​.​ DOI: https://doi.org/10.1111/1462-2920.15037 
    Details  DOI 
  • 2020 Journal Article | Research Paper | 
    ​ ​Unravelling the effects of tropical land use conversion on the soil microbiome​
    Berkelmann, D. ; Schneider, D.; Meryandini, A. & Daniel, R. ​ (2020) 
    Environmental Microbiome15(1).​ DOI: https://doi.org/10.1186/s40793-020-0353-3 
    Details  DOI 
  • 2020 Journal Article | 
    ​ ​First Report on the Plasmidome From a High-Altitude Lake of the Andean Puna​
    Perez, M. F.; Kurth, D.; Farías, M. E.; Soria, M. N.; Castillo Villamizar, G. A.; Poehlein, A.   & Daniel, R.  et al.​ (2020) 
    Frontiers in Microbiology11.​ DOI: https://doi.org/10.3389/fmicb.2020.01343 
    Details  DOI 
  • 2020 Journal Article | Research Paper | 
    ​ ​Soil bacterial community structures in relation to different oil palm management practices​
    Berkelmann, D. ; Hennings, N.; Meryandini, A.; Daniel, R.   & Schneider, D.​ (2020) 
    Scientific Data7(1).​ DOI: https://doi.org/10.1038/s41597-020-00752-3 
    Details  DOI 
  • 2020 Journal Article
    ​ ​Two Ways To Convert a Low-Affinity Potassium Channel to High Affinity: Control of Bacillus subtilis KtrCD by Glutamate​
    Krüger, L.; Herzberg, C.; Warneke, R.; Poehlein, A. ; Stautz, J.; Weiß, M. & Daniel, R.  et al.​ (2020) 
    Journal of Bacteriology202(12).​ DOI: https://doi.org/10.1128/JB.00138-20 
    Details  DOI 
  • 2020 Journal Article | 
    ​ ​Complete Genome of Roseobacter ponti DSM 106830T​
    Hollensteiner, J. ; Schneider, D.; Poehlein, A.   & Daniel, R. ​ (2020) 
    Genome Biology and Evolution12(7) pp. 1013​-1018​.​ DOI: https://doi.org/10.1093/gbe/evaa114 
    Details  DOI 
  • 2020 Journal Article
    ​ ​Genome sequence analysis of the temperate bacteriophage TBP2 of the solvent producer Clostridium saccharoperbutylacetonicum N1-4 (HMT, ATCC 27021)​
    Schüler, M. A; Stegmann, B. A; Poehlein, A. ; Daniel, R.   & Dürre, P.​ (2020) 
    FEMS Microbiology Letters367(14).​ DOI: https://doi.org/10.1093/femsle/fnaa103 
    Details  DOI 
  • 2020 Journal Article | 
    ​ ​First Complete Genome Sequences of Janthinobacterium lividum EIF1 and EIF2 and Their Comparative Genome Analysis​
    Friedrich, I.; Hollensteiner, J. ; Schneider, D.; Poehlein, A. ; Hertel, R. & Daniel, R. ​ (2020) 
    Genome Biology and Evolution12(10) pp. 1782​-1788​.​ DOI: https://doi.org/10.1093/gbe/evaa148 
    Details  DOI 
  • 2020 Journal Article
    ​ ​Phenotypic and Transcriptomic Analyses of Seven Clinical Stenotrophomonas maltophilia Isolates Identify a Small Set of Shared and Commonly Regulated Genes Involved in the Biofilm Lifestyle​
    Alio, I.; Gudzuhn, M.; Pérez García, P.; Danso, D.; Schoelmerich, M. C.; Mamat, U. & Schaible, U. E. et al.​ (2020) 
    Applied and Environmental Microbiology86(24).​ DOI: https://doi.org/10.1128/AEM.02038-20 
    Details  DOI 
  • 2020 Journal Article | 
    ​ ​From sequence to function: a new workflow for nitrilase identification​
    Egelkamp, R.; Friedrich, I.; Hertel, R. & Daniel, R. ​ (2020) 
    Applied Microbiology and Biotechnology104(11) pp. 4957​-4970​.​ DOI: https://doi.org/10.1007/s00253-020-10544-9 
    Details  DOI 
  • 2020 Journal Article
    ​ ​Seasonal variation in the diet of the serotine bat (Eptesicus serotinus): A high-resolution analysis using DNA metabarcoding​
    Tiede, J. ; Diepenbruck, M.; Gadau, J.; Wemheuer, B. ; Daniel, R.   & Scherber, C. ​ (2020) 
    Basic and Applied Ecology49 pp. 1​-12​.​ DOI: https://doi.org/10.1016/j.baae.2020.09.004 
    Details  DOI 
  • 2020 Journal Article
    ​ ​Molecular Identification and In Vitro Plant Growth-Promoting Activities of Culturable Potato (Solanum tuberosum L.) Rhizobacteria in Tanzania​
    Aloo, B. N.; Mbega, E. R.; Makumba, B. A.; Hertel, R. & Daniel, R. ​ (2020) 
    Potato Research,.​ DOI: https://doi.org/10.1007/s11540-020-09465-x 
    Details  DOI 
  • 2020 Journal Article
    ​ ​Resistance to serine in Bacillus subtilis : identification of the serine transporter YbeC and of a metabolic network that links serine and threonine metabolism​
    Klewing, A.; Koo, B.; Krüger, L.; Poehlein, A. ; Reuß, D.; Daniel, R.   & Gross, C. A. et al.​ (2020) 
    Environmental Microbiology22(9) pp. 3937​-3949​.​ DOI: https://doi.org/10.1111/1462-2920.15179 
    Details  DOI 
  • 2020 Journal Article | Research Paper | 
    ​ ​Trade-offs between multifunctionality and profit in tropical smallholder landscapes​
    Grass, I. ; Kubitza, C.; Krishna, V. V. ; Corre, M. D. ; Mußhoff, O. ; Pütz, P.   & Drescher, J.  et al.​ (2020) 
    Nature Communications11(1) pp. 1186​.​ DOI: https://doi.org/10.1038/s41467-020-15013-5 
    Details  DOI  PMID  PMC 
  • 2020 Journal Article | 
    ​ ​Tax4Fun2: prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene sequences​
    Wemheuer, F. ; Taylor, J. A.; Daniel, R. ; Johnston, E.; Meinicke, P. ; Thomas, T. & Wemheuer, B. ​ (2020) 
    Environmental Microbiome15(1).​ DOI: https://doi.org/10.1186/s40793-020-00358-7 
    Details  DOI 
  • 2020 Journal Article
    ​ ​Whole-Genome Sequences of Three Plant Growth-Promoting Rhizobacteria Isolated from Solanum tuberosum L. Rhizosphere in Tanzania​
    Aloo, B. N.; Mbega, E. R.; Makumba, B. A.; Friedrich, I.; Hertel, R. & Daniel, R. ​ (2020) 
    Microbiology resource announcements9(20).​ DOI: https://doi.org/10.1128/MRA.00371-20 
    Details  DOI 
  • 2020 Journal Article | 
    ​ ​Novel Antimicrobial Cellulose Fleece Inhibits Growth of Human-Derived Biofilm-Forming Staphylococci During the SIRIUS19 Simulated Space Mission​
    Wischer, D.; Schneider, D.; Poehlein, A. ; Herrmann, F.; Oruc, H.; Meinhardt, J. & Wagner, O. et al.​ (2020) 
    Frontiers in Microbiology11.​ DOI: https://doi.org/10.3389/fmicb.2020.01626 
    Details  DOI 
  • 2020 Journal Article
    ​ ​Complete Genome Sequence of Pseudomonas balearica Strain EC28, an Iron-Oxidizing Bacterium Isolated from Corroded Steel​
    Salgar-Chaparro, S. J.; Castillo-Villamizar, G.; Poehlein, A. ; Daniel, R.   & Machuca, L. L.​ (2020) 
    Microbiology resource announcements9(19).​ DOI: https://doi.org/10.1128/MRA.00275-20 
    Details  DOI 
  • 2020 Journal Article
    ​ ​Complete Genome Sequence of Sporomusa termitida DSM 4440T​
    Poehlein, A. ; Hollensteiner, J. ; Dreyer, A.; Gavrilova, I. & Daniel, R. ​ (2020) 
    Microbiology resource announcements9(11).​ DOI: https://doi.org/10.1128/MRA.00046-20 
    Details  DOI 
  • 2020 Journal Article
    ​ ​Genome Sequence of Komagataeibacter saccharivorans Strain JH1, Isolated from Fruit Flies​
    Hollensteiner, J. ; Poehlein, A. ; Kloskowski, P.; Ali, T. T. & Daniel, R. ​ (2020) 
    Microbiology resource announcements9(13).​ DOI: https://doi.org/10.1128/MRA.00098-20 
    Details  DOI 
  • 2020 Journal Article
    ​ ​Metagenomes of Wastewater at Different Treatment Stages in Central Germany​
    Schneider, D.; Aßmann, N.; Wicke, D.; Poehlein, A.   & Daniel, R. ​ (2020) 
    Microbiology resource announcements9(15).​ DOI: https://doi.org/10.1128/MRA.00201-20 
    Details  DOI 
  • 2020 Journal Article | 
    ​ ​Authigenic formation of Ca-Mg carbonates in the shallow alkaline Lake Neusiedl, Austria​
    Fussmann, D.; von Hoyningen-Huene, A. J. E.; Reimer, A. ; Schneider, D.; Babková, H.; Peticzka, R. & Maier, A. et al.​ (2020) 
    Biogeosciences17(7) pp. 2085​-2106​.​ DOI: https://doi.org/10.5194/bg-17-2085-2020 
    Details  DOI 
  • 2020 Journal Article | 
    ​ ​Genome-Based Comparison of All Species of the Genus Moorella, and Status of the Species Moorella thermoacetica and Moorella thermoautotrophica​
    Redl, S.; Poehlein, A. ; Esser, C.; Bengelsdorf, F. R.; Jensen, T. Ø.; Jendresen, C. B. & Tindall, B. J. et al.​ (2020) 
    Frontiers in Microbiology10.​ DOI: https://doi.org/10.3389/fmicb.2019.03070 
    Details  DOI 
  • 2020 Journal Article | 
    ​ ​Agroforestry Management Systems Drive the Composition, Diversity, and Function of Fungal and Bacterial Endophyte Communities in Theobroma Cacao Leaves​
    Wemheuer, F. ; Berkelmann, D. ; Wemheuer, B. ; Daniel, R. ; Vidal, S.   & Bisseleua Daghela, H. B.​ (2020) 
    Microorganisms8(3) art. 405​.​ DOI: https://doi.org/10.3390/microorganisms8030405 
    Details  DOI  PMID  PMC 
  • 2019 Journal Article
    ​ ​Sustained sensing in potassium homeostasis: Cyclic di-AMP controls potassium uptake by KimA at the levels of expression and activity​
    Gundlach, J.; Krüger, L.; Herzberg, C.; Turdiev, A.; Poehlein, A. ; Tascón, I. & Weiss, M. et al.​ (2019) 
    Journal of Biological Chemistry294(24) pp. 9605​-9614​.​ DOI: https://doi.org/10.1074/jbc.RA119.008774 
    Details  DOI 
  • 2019 Journal Article
    ​ ​Impact of sea level change on coastal soil organic matter, priming effects and prokaryotic community assembly​
    Dinter, T.; Geihser, S.; Gube, M.; Daniel, R.   & Kuzyakov, Y. ​ (2019) 
    FEMS Microbiology Ecology95(10).​ DOI: https://doi.org/10.1093/femsec/fiz129 
    Details  DOI 
  • 2019 Journal Article | 
    ​ ​Topoisomerase IV can functionally replace all type 1A topoisomerases in Bacillus subtilis​
    Reuß, D. R; Faßhauer, P.; Mroch, P. J.; Ul-Haq, I.; Koo, B.-M.; Pöhlein, A. & Gross, C. A et al.​ (2019) 
    Nucleic Acids Research47(10) pp. 5231​-5242​.​ DOI: https://doi.org/10.1093/nar/gkz260 
    Details  DOI 
  • 2019 Preprint
    ​ ​Authigenic formation of Ca-Mg carbonates in the shallow alkaline Lake Neusiedl, Austria​
    Fussmann, D.; von Hoyningen-Huene, A. J. E.; Reimer, A. ; Schneider, D.; Babková, H.; Peticzka, R.& Maier, A. et al.​ (2019). DOI: https://doi.org/10.5194/bg-2019-449 
    Details  DOI 
  • 2019 Journal Article | 
    ​ ​Deciphering bacterial and fungal endophyte communities in leaves of two maple trees with green islands​
    Wemheuer, F. ; Wemheuer, B. ; Daniel, R.   & Vidal, S. ​ (2019) 
    Scientific Reports9(1) art. 14183​.​ DOI: https://doi.org/10.1038/s41598-019-50540-2 
    Details  DOI  PMID  PMC 
  • 2019 Journal Article | 
    ​ ​Bacterial succession along a sediment porewater gradient at Lake Neusiedl in Austria​
    von Hoyningen-Huene, A. J. E.; Schneider, D.; Fussmann, D.; Reimer, A. ; Arp, G.   & Daniel, R. ​ (2019) 
    Scientific Data6(1) art. 163​.​ DOI: https://doi.org/10.1038/s41597-019-0172-9 
    Details  DOI  PMID  PMC 
  • 2019 Journal Article
    ​ ​Biochemical profiles of two thermostable and organic solvent-tolerant esterases derived from a compost metagenome​
    Lu, M. ; Dukunde, A.   & Daniel, R. ​ (2019) 
    Applied microbiology and biotechnology103(8) pp. 3421​-3437​.​ DOI: https://doi.org/10.1007/s00253-019-09695-1 
    Details  DOI  PMID  PMC 
  • 2019 Journal Article | 
    ​ ​Functional Metagenomics Reveals an Overlooked Diversity and Novel Features of Soil-Derived Bacterial Phosphatases and Phytases​
    Castillo Villamizar, G. A.; Nacke, H.; Boehning, M.; Herz, K. & Daniel, R. ​ (2019) 
    mBio10(1) art. e01966-18​.​ DOI: https://doi.org/10.1128/mBio.01966-18 
    Details  DOI  PMID  PMC 
  • 2019 Journal Article
    ​ ​Distinct relationships between fluorescence in situ hybridization and 16S rRNA gene- and amplicon-based sequencing data of bacterioplankton lineages​
    Bakenhus, I.; Wemheuer, B. ; Akyol, P.; Giebel, H.-A.; Dlugosch, L.; Daniel, R.   & Simon, M.​ (2019) 
    Systematic and Applied Microbiology42(5) art. 126000​.​ DOI: https://doi.org/10.1016/j.syapm.2019.06.005 
    Details  DOI  PMID  PMC 
  • 2019 Journal Article
    ​ ​Prokaryotic Diversity and Community Patterns in Antarctic Continental Shelf Sponges​
    Steinert, G.; Wemheuer, B. ; Janussen, D.; Erpenbeck, D.; Daniel, R. ; Simon, M. & Brinkhoff, T. et al.​ (2019) 
    Frontiers in Marine Science6.​ DOI: https://doi.org/10.3389/fmars.2019.00297 
    Details  DOI 
  • 2019 Journal Article | 
    ​ ​One size fits all? Relationships among group size, health, and ecology indicate a lack of an optimal group size in a wild lemur population​
    Rudolph, K.; Fichtel, C. ; Schneider, D.; Heistermann, M. ; Koch, F. ; Daniel, R.   & Kappeler, P. M. ​ (2019) 
    Behavioral Ecology and Sociobiology73(9).​ DOI: https://doi.org/10.1007/s00265-019-2746-0 
    Details  DOI 
  • 2019 Journal Article | 
    ​ ​First Insights Into Bacterial Gastrointestinal Tract Communities of the Eurasian Beaver (Castor fiber)​
    Pratama, R.; Schneider, D.; Böer, T. & Daniel, R. ​ (2019) 
    Frontiers in Microbiology10 art. 1646​.​ DOI: https://doi.org/10.3389/fmicb.2019.01646 
    Details  DOI 
  • 2019 Journal Article | 
    ​ ​Signal peptide peptidase activity connects the unfolded protein response to plant defense suppression by Ustilago maydis​
    Pinter, N.; Hach, C. A.; Hampel, M.; Rekhter, D.; Zienkiewicz, K.; Feußner, I.   & Poehlein, A.  et al.​ (2019) 
    PLOS Pathogens15(4) art. e1007734​.​ DOI: https://doi.org/10.1371/journal.ppat.1007734 
    Details  DOI  PMID  PMC 
  • 2019 Journal Article | 
    ​ ​Primary Production in the Water Column as Major Structuring Element of the Biogeographical Distribution and Function of Archaea in Deep-Sea Sediments of the Central Pacific Ocean​
    Wemheuer, F. ; von Hoyningen-Huene, A. J. E.; Pohlner, M.; Degenhardt, J.; Engelen, B.; Daniel, R.   & Wemheuer, B. ​ (2019) 
    Archaea2019 art. 3717239​.​ DOI: https://doi.org/10.1155/2019/3717239 
    Details  DOI  PMID  PMC 
  • 2019 Journal Article | Research Paper | 
    ​ ​Changes in Trophic Groups of Protists With Conversion of Rainforest Into Rubber and Oil Palm Plantations​
    Schulz, G.; Schneider, D.; Brinkmann, N. ; Edy, N.; Daniel, R. ; Polle, A.   & Scheu, S.  et al.​ (2019) 
    Frontiers in Microbiology10 art. 240​.​ DOI: https://doi.org/10.3389/fmicb.2019.00240 
    Details  DOI  PMID  PMC 
  • 2019 Journal Article | 
    ​ ​Impact of Nitriles on Bacterial Communities​
    Egelkamp, R.; Zimmermann, T.; Schneider, D.; Hertel, R. & Daniel, R. ​ (2019) 
    Frontiers in Environmental Science7 art. 103​.​ DOI: https://doi.org/10.3389/fenvs.2019.00103 
    Details  DOI 
  • 2019 Journal Article | 
    ​ ​Functional Metagenomics Reveals a New Catalytic Domain, the Metallo-β-Lactamase Superfamily Domain, Associated with Phytase Activity​
    Castillo Villamizar, G. A.; Funkner, K.; Nacke, H.; Foerster, K. & Daniel, R. ​ (2019) 
    mSphere4(3).​ DOI: https://doi.org/10.1128/mSphere.00167-19 
    Details  DOI  PMID  PMC 
  • 2019 Journal Article
    ​ ​Complete Genome Sequence of Marinobacter sp. Strain JH2, Isolated from Seawater of the Kiel Fjord​
    Hollensteiner, J. ; Poehlein, A.   & Daniel, R. ​ (2019) 
    Microbiology resource announcements8(30).​ DOI: https://doi.org/10.1128/MRA.00596-19 
    Details  DOI 
  • 2019 Journal Article
    ​ ​Genome Sequence of the Caproic Acid-Producing Bacterium Caproiciproducens galactitolivorans BS-1T (JCM 30532)​
    Bengelsdorf, F. R.; Poehlein, A. ; Daniel, R.   & Dürre, P.​ (2019) 
    Microbiology resource announcements8(31).​ DOI: https://doi.org/10.1128/MRA.00346-19 
    Details  DOI 
  • 2019 Journal Article | 
    ​ ​Land Use Change and Water Quality Use for Irrigation Alters Drylands Soil Fungal Community in the Mezquital Valley, Mexico​
    Lüneberg, K.; Schneider, D.; Brinkmann, N. ; Siebe, C. & Daniel, R. ​ (2019) 
    Frontiers in Microbiology10 pp. 1220​.​ DOI: https://doi.org/10.3389/fmicb.2019.01220 
    Details  DOI  PMID  PMC 
  • 2019 Journal Article
    ​ ​Assembly processes of trophic guilds in the root mycobiome of temperate forests​
    Schröter, K.; Wemheuer, B. ; Pena, R. ; Schöning, I.; Ehbrecht, M.; Schall, P.   & Ammer, C.  et al.​ (2019) 
    Molecular Ecology28(2) pp. 348​-364​.​ DOI: https://doi.org/10.1111/mec.14887 
    Details  DOI  PMID  PMC 
  • 2018 Journal Article
    ​ ​Draft Genome Sequence of Bacillus sp. Strain M21, Isolated from the Arid Area of Matmata, Tunisia​
    Nasfi, Z.; Poehlein, A. ; Harms, H.; Goralski, E.; Fisch, K. M.; Daniel, R.   & König, G. M. et al.​ (2018) 
    Genome Announcements6(17).​ DOI: https://doi.org/10.1128/genomeA.00323-18 
    Details  DOI 
  • 2018 Journal Article
    ​ ​Draft Genome Sequences of the Obligatory Marine Myxobacterial Strains Enhygromyxa salina SWB005 and SWB007​
    Amiri Moghaddam, J.; Poehlein, A. ; Fisch, K.; Alanjary, M.; Daniel, R. ; König, G. M. & Schäberle, T. F.​ (2018) 
    Genome Announcements6(17).​ DOI: https://doi.org/10.1128/genomeA.00324-18 
    Details  DOI 
  • 2018 Journal Article
    ​ ​Draft Genome Sequence of Komagataeibacter maltaceti LMG 1529 T , a Vinegar-Producing Acetic Acid Bacterium Isolated from Malt Vinegar Brewery Acetifiers​
    Zhang, Q.; Poehlein, A. ; Hollensteiner, J.   & Daniel, R. ​ (2018) 
    Genome Announcements6(16) pp. e00330-18​.​ DOI: https://doi.org/10.1128/genomeA.00330-18 
    Details  DOI 
  • 2018 Journal Article
    ​ ​First Insight into the Genome Sequence of Clostridium vincentii DSM 10228, Isolated from Sediment of the McMurdo Ice Shelf, Antarctica​
    Poehlein, A. ; Bolz, S.; Fischer, B. & Daniel, R. ​ (2018) 
    Genome Announcements6(15) pp. e00334-18​.​ DOI: https://doi.org/10.1128/genomeA.00334-18 
    Details  DOI 
  • 2018 Journal Article
    ​ ​The unexpected function of a Flavin-dependent oxidoreductase (Fox) from Variovorax paradoxus TBEA6.​
    Meinert, C.; Schürmann, M.; Domeyer, J.-E.; Poehlein, A. ; Daniel, R.   & Steinbüchel, A.​ (2018) 
    FEMS Microbiology Letters,.​ DOI: https://doi.org/10.1093/femsle/fny011 
    Details  DOI 
  • 2018 Journal Article
    ​ ​Complete Genome Sequence of the Methanococcus maripaludis Type Strain JJ (DSM 2067), a Model for Selenoprotein Synthesis in Archaea​
    Poehlein, A. ; Heym, D.; Quitzke, V.; Fersch, J.; Daniel, R.   & Rother, M.​ (2018) 
    Genome Announcements6(14).​ DOI: https://doi.org/10.1128/genomeA.00237-18 
    Details  DOI 
  • 2018 Journal Article
    ​ ​First Insight into the Genome Sequence of Clostridium liquoris DSM 100320, a Butyrate- and Ethanol-Producing Bacterium​
    Poehlein, A. ; Neubauer, H.; Niemeyer, P. & Daniel, R. ​ (2018) 
    Genome Announcements6(18).​ DOI: https://doi.org/10.1128/genomeA.00376-18 
    Details  DOI 
  • 2018 Journal Article
    ​ ​Draft Genome Sequence of the Butanoic Acid-Producing Bacterium Clostridium luticellarii DSM 29923, Used for Strong Aromatic Chinese Liquor Production​
    Poehlein, A. ; Bremekamp, R.; Lutz, V. T.; Schulz, L. M. & Daniel, R. ​ (2018) 
    Genome Announcements6(18).​ DOI: https://doi.org/10.1128/genomeA.00377-18 
    Details  DOI 
  • 2018 Journal Article
    ​ ​First Insights into the Genome Sequence of Clostridium thermopalmarium DSM 5974, a Butyrate-Producing Bacterium Isolated from Palm Wine​
    Poehlein, A. ; Hettwer, E.; Mohnike, L. & Daniel, R. ​ (2018) 
    Genome Announcements6(17).​ DOI: https://doi.org/10.1128/genomeA.00338-18 
    Details  DOI 
  • 2018 Journal Article
    ​ ​Draft Genome Sequence of the Thermophilic Acetogen Moorella humiferrea DSM 23265​
    Poehlein, A. ; Keyl, A.; Milsch, J. C. & Daniel, R. ​ (2018) 
    Genome Announcements6(17).​ DOI: https://doi.org/10.1128/genomeA.00357-18 
    Details  DOI 
  • 2018 Journal Article
    ​ ​Draft Genome Sequence of the Hydrogenogenic Carboxydotroph Moorella stamsii DSM 26271​
    Poehlein, A. ; Böer, T.; Steensen, K. & Daniel, R. ​ (2018) 
    Genome Announcements6(18).​ DOI: https://doi.org/10.1128/genomeA.00345-18 
    Details  DOI 
  • 2018 Journal Article
    ​ ​Complete Genome Sequence of vB_BveP-Goe6, a Virus Infecting Bacillus velezensis FZB42​
    Schilling, T.; Hoppert, M. ; Daniel, R.   & Hertel, R.​ (2018) 
    Genome Announcements6(8).​ DOI: https://doi.org/10.1128/genomeA.00008-18 
    Details  DOI 
  • 2018 Journal Article
    ​ ​Complete Genome Sequences of pLMA1 and pLMA7, Two Large Linear Plasmids of Micrococcus Strains Isolated from a High-Altitude Lake in Argentina​
    Dib, J. R.; Perez, M. F.; Schuldes, J.; Poehlein, A. ; Wagenknecht, M.; Farías, M. E. & Meinhardt, F. et al.​ (2018) 
    Genome Announcements6(8).​ DOI: https://doi.org/10.1128/genomeA.00010-18 
    Details  DOI 
  • 2018 Journal Article | 
    ​ ​Genome sequence of Planktotalea frisia type strain (SH6-1T), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloom​
    Bakenhus, I.; Voget, S.; Poehlein, A. ; Brinkhoff, T.; Daniel, R.   & Simon, M.​ (2018) 
    Standards in Genomic Sciences13(1).​ DOI: https://doi.org/10.1186/s40793-018-0311-5 
    Details  DOI 
  • 2018 Journal Article | 
    ​ ​Drylands soil bacterial community is affected by land use change and different irrigation practices in the Mezquital Valley, Mexico​
    Lüneberg, K.; Schneider, D.; Siebe, C. & Daniel, R. ​ (2018) 
    Scientific Reports8(1).​ DOI: https://doi.org/10.1038/s41598-018-19743-x 
    Details  DOI 
  • 2018 Journal Article | 
    ​ ​Comparative genome and phenotypic analysis of three Clostridioides difficile strains isolated from a single patient provide insight into multiple infection of C. difficile.​
    Groß, U. ; Brzuszkiewicz, E. B.; Gunka, K. ; Starke, J.; Riedel, T.; Bunk, B. & Spröer, C. et al.​ (2018) 
    BMC Genomics19(1) pp. 1​-14​.​ DOI: https://doi.org/10.1186/s12864-017-4368-0 
    Details  DOI  PMID  PMC 
  • 2018 Journal Article
    ​ ​Draft Genome Sequence of the Endophyte Bacillus mycoides Strain GM5LP Isolated from Lolium perenne​
    Hollensteiner, J. ; Poehlein, A. ; Granzow, S.; Liesegang, H. ; Daniel, R. ; Vidal, S.   & Wemheuer, F. ​ (2018) 
    Genome Announcements6(4).​ DOI: https://doi.org/10.1128/genomeA.01517-17 
    Details  DOI 
  • 2018 Monograph
    ​ ​Molecular ecology and genetic diversity of the Roseobacter clade​ ​
    Daniel, R. ; Simon, M.& Wemheuer, B. ​ (2018)
    Frontiers Media SA. DOI: https://doi.org/10.3389/978-2-88945-538-6 
    Details  DOI 
  • 2018 Preprint
    ​ ​Tax4Fun2: a R-based tool for the rapid prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene marker gene sequences​
    Wemheuer, F. ; Taylor, J. A.; Daniel, R. ; Johnston, E.; Meinicke, P. ; Thomas, T.& Wemheuer, B. ​ (2018). DOI: https://doi.org/10.1101/490037 
    Details  DOI 
  • 2018 Journal Article | 
    ​ ​Preliminary Investigation of Species Diversity of Rice Hopper Parasitoids in Southeast Asia.​
    Sann, C.; Wemheuer, F. ; Beaurepaire, A.; Daniel, R. ; Erler, S. & Vidal, S. ​ (2018) 
    Insects9(1) pp. 1​-12​.​ DOI: https://doi.org/10.3390/insects9010019 
    Details  DOI  PMID  PMC 
  • 2018 Journal Article
    ​ ​Methanol metabolism in the acetogenic bacterium Acetobacterium woodii​
    Kremp, F.; Poehlein, A. ; Daniel, R.   & Müller, V.​ (2018) 
    Environmental Microbiology20(12) pp. 4369​-4384​.​ DOI: https://doi.org/10.1111/1462-2920.14356 
    Details  DOI 
  • 2018 Journal Article | Research Paper | 
    ​ ​How Rainforest Conversion to Agricultural Systems in Sumatra (Indonesia) Affects Active Soil Bacterial Communities​
    Berkelmann, D. ; Schneider, D.; Engelhaupt, M.; Heinemann, M.; Christel, S.; Wijayanti, M. & Meryandini, A. et al.​ (2018) 
    Frontiers in Microbiology9 art. 2381​.​ DOI: https://doi.org/10.3389/fmicb.2018.02381 
    Details  DOI 
  • 2018 Journal Article | 
    ​ ​Comparative Genomic Analysis of Members of the Genera Methanosphaera and Methanobrevibacter Reveals Distinct Clades with Specific Potential Metabolic Functions​
    Poehlein, A. ; Schneider, D.; Soh, M.; Daniel, R.   & Seedorf, H.​ (2018) 
    Archaea2018 pp. 1​-9​.​ DOI: https://doi.org/10.1155/2018/7609847 
    Details  DOI 
  • 2018 Journal Article
    ​ ​Changes of DNA topology affect the global transcription landscape and allow rapid growth of a Bacillus subtilis mutant lacking carbon catabolite repression​
    Reuß, D. R.; Rath, H.; Thürmer, A.; Benda, M.; Daniel, R. ; Völker, U.   & Mäder, U. et al.​ (2018) 
    Metabolic Engineering45 pp. 171​-179​.​ DOI: https://doi.org/10.1016/j.ymben.2017.12.004 
    Details  DOI 
  • 2018 Journal Article | Editorial Contribution (Editorial, Introduction, Epilogue)
    ​ ​Editorial: Molecular Ecology and Genetic Diversity of the Roseobacter Clade​
    Daniel, R. ; Simon, M. & Wemheuer, B. ​ (2018) 
    Frontiers in Microbiology9 art. 1185​.​ DOI: https://doi.org/10.3389/fmicb.2018.01185 
    Details  DOI  PMID  PMC 
  • 2018 Journal Article
    ​ ​The impact of even-aged and uneven-aged forest management on regional biodiversity of multiple taxa in European beech forests​
    Schall, P. ; Goßner, M. M.; Heinrichs, S. ; Fischer, M.; Boch, S.; Prati, D. & Jung, K. et al.​ (2018) 
    Journal of Applied Ecology55(1) pp. 267​-278​.​ DOI: https://doi.org/10.1111/1365-2664.12950 
    Details  DOI 
  • 2018 Journal Article
    ​ ​Draft Genome Sequence of the Endophyte Bacillus mycoides Strain GM6LP Isolated from Lolium perenne​
    Wemheuer, F. ; Hollensteiner, J. ; Poehlein, A. ; Liesegang, H. ; Daniel, R.   & Wemheuer, B. ​ (2018) 
    Genome Announcements6(5).​ DOI: https://doi.org/10.1128/genomeA.00011-18 
    Details  DOI  PMID  PMC 
  • 2018 Journal Article
    ​ ​Draft Genome Sequence of the Endophyte Paenibacillus sp. Strain GM2FR Isolated from Festuca rubra​
    Wemheuer, F. ; Wemheuer, B. ; Hollensteiner, J. ; Daniel, R.   & Poehlein, A. ​ (2018) 
    Genome Announcements6(6) pp. e00017​-e00018​.​ DOI: https://doi.org/10.1128/genomeA.00017-18 
    Details  DOI  PMID  PMC 
  • 2017 Journal Article | 
    ​ ​Gut bacterial communities of diarrheic patients with indications of Clostridioides difficile infection.​
    Schneider, D.; Thürmer, A.; Gollnow, K.; Lugert, R. ; Gunka, K. ; Groß, U.   & Daniel, R. ​ (2017) 
    Scientific data4 art. 170152​.​ DOI: https://doi.org/10.1038/sdata.2017.152 
    Details  DOI  PMID  PMC 
  • 2017 Journal Article
    ​ ​First Insights into the Genome Sequence of the Strictly Anaerobic Homoacetogenic Sporomusa sphaeroides Strain E (DSM 2875)​
    Villamizar, G. A. C.; Daniel, R.   & Poehlein, A. ​ (2017) 
    Genome Announcements5(12).​ DOI: https://doi.org/10.1128/genomeA.00037-17 
    Details  DOI 
  • 2017 Journal Article
    ​ ​Genome Sequence of Creatinine-Fermenting Tissierella creatinophila Strain KRE 4T (DSM 6911)​
    Nacke, H.; Daniel, R.   & Poehlein, A. ​ (2017) 
    Genome Announcements5(12).​ DOI: https://doi.org/10.1128/genomeA.00051-17 
    Details  DOI 
  • 2017 Journal Article
    ​ ​First Insight into the Genome Sequence of Clostridium thermobutyricum DSM 4928, a Butyrate-Producing Moderate Thermophile​
    Poehlein, A. ; Anbalagan, A.; Nagel, A. & Daniel, R. ​ (2017) 
    Genome Announcements5(20).​ DOI: https://doi.org/10.1128/genomeA.00367-17 
    Details  DOI 
  • 2017 Journal Article
    ​ ​First Insights into the Genome Sequence of the Cellulolytic Bacterium Clostridium hungatei DSM 14427​
    Poehlein, A. ; Funkner, K.; Schüler, M. A. & Daniel, R. ​ (2017) 
    Genome Announcements5(20).​ DOI: https://doi.org/10.1128/genomeA.00363-17 
    Details  DOI 
  • 2017 Journal Article
    ​ ​First Insights into the Genome Sequence of the Alkaliphilic Thermotolerant Bacterium Clostridium thermoalcaliphilum JW/YL23-2T​
    Poehlein, A. ; Berg, A.; Welsing, G. & Daniel, R. ​ (2017) 
    Genome Announcements5(20).​ DOI: https://doi.org/10.1128/genomeA.00368-17 
    Details  DOI 
  • 2017 Journal Article | 
    ​ ​Bacillus thuringiensis and Bacillus weihenstephanensis Inhibit the Growth of Phytopathogenic Verticillium Species​
    Hollensteiner, J. ; Wemheuer, F. ; Harting, R.; Kolarzyk, A. M.; Valeria, S. M. D.; Poehlein, A.   & Brzuszkiewicz, E. B. et al.​ (2017) 
    Frontiers in Microbiology7 art. 2171​.​ DOI: https://doi.org/10.3389/fmicb.2016.02171 
    Details  DOI  WoS 
  • 2017 Journal Article | 
    ​ ​Sphingomonas jeddahensis sp. nov., isolated from Saudi Arabian desert soil​
    Wübbeler, J. H.; Oppermann-Sanio, F. B.; Ockenfels, A.; Röttig, A.; Osthaar-Ebker, A.; Verbarg, S. & Poehlein, A.  et al.​ (2017) 
    International Journal of Systematic and Evolutionary Microbiology67(10) pp. 4057​-4063​.​ DOI: https://doi.org/10.1099/ijsem.0.002249 
    Details  DOI 
  • 2017 Journal Article | Erratum | 
    ​ ​Erratum: Proposal for the reclassification of obligately purine-fermenting bacteria Clostridium acidurici (Barker 1938) and Clostridium purinilyticum (Dürre et al. 1981) as Gottschalkia acidurici gen. nov. comb. nov. and Gottschalkia purinilytica comb. nov. and of Eubacterium angustum (Beuscher and Andreesen 1985) as Andreesenia angusta gen. nov. comb. nov. in the family Gottschalkiaceae fam. nov.​
    Poehlein, A. ; Yutin, N.; Daniel, R.   & Galperin, M. Y.​ (2017) 
    International Journal of Systematic and Evolutionary Microbiology67(10) pp. 4287​-4288​.​ DOI: https://doi.org/10.1099/ijsem.0.002362 
    Details  DOI 
  • 2017 Journal Article | 
    ​ ​Proposal for the reclassification of obligately purine-fermenting bacteria Clostridium acidurici (Barker 1938) and Clostridium purinilyticum (Dürre et al. 1981) as Gottschalkia acidurici gen. nov. comb. nov. and Gottschalkia purinilytica comb. nov. and of Eubacterium angustum (Beuscher and Andreesen 1985) as Andreesenia angusta gen. nov. comb. nov. in the family Gottschalkiaceae fam. nov.​
    Poehlein, A. ; Yutin, N.; Daniel, R.   & Galperin, M. Y.​ (2017) 
    International Journal of Systematic and Evolutionary Microbiology67(8) pp. 2711​-2719​.​ DOI: https://doi.org/10.1099/ijsem.0.002008 
    Details  DOI 
  • 2017 Journal Article | 
    ​ ​Linking Compositional and Functional Predictions to Decipher the Biogeochemical Significance in DFAA Turnover of Abundant Bacterioplankton Lineages in the North Sea.​
    Wemheuer, B. ; Wemheuer, F. ; Meier, D.; Billerbeck, S.; Giebel, H.-A.; Simon, M. & Scherber, C.  et al.​ (2017) 
    Microorganisms5(4).​ DOI: https://doi.org/10.3390/microorganisms5040068 
    Details  DOI  PMID  PMC 
  • 2017 Journal Article
    ​ ​Draft Genome Sequence of Bacillus pumilus Strain GM3FR, an Endophyte Isolated from Aerial Plant Tissues of Festuca rubra L​
    Hollensteiner, J. ; Poehlein, A. ; Daniel, R. ; Liesegang, H. ; Vidal, S.   & Wemheuer, F. ​ (2017) 
    Genome Announcements5(13) art. e00085-17​.​ DOI: https://doi.org/10.1128/genomeA.00085-17 
    Details  DOI  PMID  PMC 
  • 2017 Journal Article | Research Paper | 
    ​ ​The Effects of Cropping Regimes on Fungal and Bacterial Communities of Wheat and Faba Bean in a Greenhouse Pot Experiment Differ between Plant Species and Compartment​
    Granzow, S.; Kaiser, K. ; Wemheuer, B. ; Pfeiffer, B. ; Daniel, R. ; Vidal, S.   & Wemheuer, F. ​ (2017) 
    Frontiers in Microbiology8 art. 902​.​ DOI: https://doi.org/10.3389/fmicb.2017.00902 
    Details  DOI  PMID  PMC  WoS 
  • 2017 Journal Article
    ​ ​First Insights into the Genome of the Cr(VI)-Reducing Bacterium Clostridium chromiireducens DSM 23318​
    Poehlein, A. ; Höche, N.; Mehr, A. & Daniel, R. ​ (2017) 
    Genome Announcements5(22).​ DOI: https://doi.org/10.1128/genomeA.00420-17 
    Details  DOI 
  • 2017 Journal Article
    ​ ​First Insights into the Genome Sequence of Clostridium oryzae DSM 28571, Isolated from the Soil of a Japanese Rice Field​
    Poehlein, A. ; Gippert, A. L.; Bierenbroodspot, M. J. & Daniel, R. ​ (2017) 
    Genome Announcements5(24).​ DOI: https://doi.org/10.1128/genomeA.00539-17 
    Details  DOI 
  • 2017 Journal Article
    ​ ​Complete Genome Sequence of the Autotrophic Acetogen Clostridium formicaceticum DSM 92T Using Nanopore and Illumina Sequencing Data​
    Karl, M. M.; Poehlein, A. ; Bengelsdorf, F. R.; Daniel, R.   & Dürre, P.​ (2017) 
    Genome Announcements5(21).​ DOI: https://doi.org/10.1128/genomeA.00423-17 
    Details  DOI 
  • 2017 Journal Article
    ​ ​Genetic Variability of Myxoma Virus Genomes​
    Braun, C.; Thürmer, A.; Daniel, R. ; Schultz, A.-K.; Bulla, I.; Schirrmeier, H. & Mayer, D. et al.​ (2017) 
    Journal of Virology91(4).​ DOI: https://doi.org/10.1128/JVI.01570-16 
    Details  DOI 
  • 2017 Journal Article
    ​ ​Genome Sequence of Lactobacillus sunkii Strain CG_D​
    Gabris, C.; Poehlein, A. ; Bengelsdorf, F. R.; Daniel, R.   & Dürre, P.​ (2017) 
    Genome Announcements5(2).​ DOI: https://doi.org/10.1128/genomeA.01487-16 
    Details  DOI 
  • 2017 Journal Article
    ​ ​Genome Sequence of Uric Acid-Fermenting Eubacterium angustum DSM 1989T (MK-1)​
    Poehlein, A. ; Galperin, M. Y.; Andreesen, J. R. & Daniel, R. ​ (2017) 
    Genome Announcements5(2).​ DOI: https://doi.org/10.1128/genomeA.01439-16 
    Details  DOI 
  • 2017 Journal Article
    ​ ​Insights into the Genome of the Anaerobic Acetogen Sporomusa silvacetica DSM 10669​
    Humphreys, J. R.; Daniel, R.   & Poehlein, A. ​ (2017) 
    Genome Announcements5(38).​ DOI: https://doi.org/10.1128/genomeA.00983-17 
    Details  DOI 
  • 2017 Journal Article
    ​ ​Genome Sequence of the Homoacetogenic, Gram-Negative, Endospore-Forming Bacterium Sporomusa acidovorans DSM 3132​
    Humphreys, J. R.; Daniel, R.   & Poehlein, A. ​ (2017) 
    Genome Announcements5(38).​ DOI: https://doi.org/10.1128/genomeA.00981-17 
    Details  DOI 
  • 2017 Journal Article
    ​ ​Adaptation of Bacillus subtilis to Life at Extreme Potassium Limitation​
    Gundlach, J.; Herzberg, C.; Hertel, D. ; Thürmer, A.; Daniel, R. ; Link, H. & Stülke, J. ​ (2017) 
    mBio8(4).​ DOI: https://doi.org/10.1128/mBio.00861-17 
    Details  DOI 
  • 2017 Journal Article
    ​ ​Potentially Active Iron, Sulfur, and Sulfate Reducing Bacteria in Skagerrak and Bothnian Bay Sediments​
    Reyes, C.; Schneider, D.; Thürmer, A.; Kulkarni, A.; Lipka, M.; Sztejrenszus, S. Y. & Böttcher, M. E. et al.​ (2017) 
    Geomicrobiology Journal34(10) pp. 840​-850​.​ DOI: https://doi.org/10.1080/01490451.2017.1281360 
    Details  DOI 
  • 2017 Journal Article
    ​ ​Expression of membrane-bound dehydrogenases from a mother of vinegar metagenome in Gluconobacter oxydans​
    Peters, B.; Mientus, M.; Kostner, D.; Daniel, R. ; Liebl, W. & Ehrenreich, A.​ (2017) 
    Applied Microbiology and Biotechnology101(21) pp. 7901​-7912​.​ DOI: https://doi.org/10.1007/s00253-017-8479-y 
    Details  DOI 
  • 2017 Book Chapter
    ​ ​Extraction of Total DNA and RNA from Marine Filter Samples and Generation of a cDNA as Universal Template for Marker Gene Studies​
    Schneider, D.; Wemheuer, F. ; Pfeiffer, B.  & Wemheuer, B. ​ (2017)
    In:​Streit, W.; Daniel, R.​ (Eds.), Metagenomics. Methods in Molecular Biology pp. 13​-22. (Vol. 1539). ​New York, NY: ​Humana Press. DOI: https://doi.org/10.1007/978-1-4939-6691-2_2 
    Details  DOI  PMID  PMC 
  • 2017 Journal Article | Research Paper
    ​ ​Direct and cascading impacts of tropical land-use change on multi-trophic biodiversity​
    Barnes, A. D. ; Allen, K. ; Kreft, H. ; Corre, M. D. ; Jochum, M.; Veldkamp, E.   & Clough, Y.  et al.​ (2017) 
    Nature Ecology & Evolution1(10) pp. 1511​-1519​.​ DOI: https://doi.org/10.1038/s41559-017-0275-7 
    Details  DOI  PMID  PMC 
  • 2017 Journal Article
    ​ ​Draft Genome Sequences of Sphingomonas mucosissima DSM 17494 and Sphingomonas dokdonensis DSM 21029​
    Poehlein, A. ; Wübbeler, J. H.; Daniel, R.   & Steinbüchel, A.​ (2017) 
    Genome Announcements5(35).​ DOI: https://doi.org/10.1128/genomeA.00889-17 
    Details  DOI 
  • 2017 Journal Article
    ​ ​First Insights into the Genome Sequence of Pseudomonas oleovorans DSM 1045​
    Poehlein, A. ; Daniel, R. ; Thürmer, A.; Bollinger, A.; Thies, S.; Katzke, N. & Jaeger, K.-E.​ (2017) 
    Genome Announcements5(32).​ DOI: https://doi.org/10.1128/genomeA.00774-17 
    Details  DOI 
  • 2017 Journal Article
    ​ ​Waldbewirtschaftung und Biodiversität: Vielfalt ist gefragt​
    Ammer, C. ; Schall, P. ; Goßner, M. M.; Fischer, M.; Heinrichs, S. ; Boch, S. & Prati, D. et al.​ (2017) 
    AFZ, der Wald72(17) pp. 20​-25​.​
    Details 
  • 2017 Journal Article
    ​ ​Genome Sequence of Enterococcus faecalis Strain CG_E​
    Gabris, C.; Poehlein, A. ; Bengelsdorf, F. R.; Daniel, R.   & Dürre, P.​ (2017) 
    Genome Announcements5(2).​ DOI: https://doi.org/10.1128/genomeA.01488-16 
    Details  DOI 
  • 2017 Journal Article
    ​ ​Rhodobacteraceae on the marine brown alga Fucus spiralis are abundant and show physiological adaptation to an epiphytic lifestyle​
    Dogs, M.; Wemheuer, B. ; Wolter, L.; Bergen, N.; Daniel, R. ; Simon, M. & Brinkhoff, T.​ (2017) 
    Systematic and Applied Microbiology40(6) pp. 370​-382​.​ DOI: https://doi.org/10.1016/j.syapm.2017.05.006 
    Details  DOI  PMID  PMC 
  • 2017 Journal Article
    ​ ​Links between seawater flooding, soil ammonia oxidiser communities and their response to changes in salinity​
    Nacke, H.; Schöning, I.; Schindler, M.; Schrumpf, M.; Daniel, R. ; Nicol, G. W. & Prosser, J. I.​ (2017) 
    FEMS Microbiology Ecology93(11).​ DOI: https://doi.org/10.1093/femsec/fix144 
    Details  DOI 
  • 2017 Book Chapter
    ​ ​Assessing Bacterial and Fungal Diversity in the Plant Endosphere​
    Wemheuer, B.  & Wemheuer, F. ​ (2017)
    In:​Streit, W.; Daniel, R.​ (Eds.), Metagenomics. Methods in Molecular Biology pp. 75​-84. (Vol. 1539). ​New York, NY: ​Humana Press. DOI: https://doi.org/10.1007/978-1-4939-6691-2_6 
    Details  DOI  PMID  PMC 
  • 2017 Journal Article | 
    ​ ​Complementary Metaproteomic Approaches to Assess the Bacterioplankton Response toward a Phytoplankton Spring Bloom in the Southern North Sea​
    Woehlbrand, L.; Wemheuer, B. ; Feenders, C.; Ruppersberg, H. S.; Hinrichs, C.; Blasius, B. & Daniel, R.  et al.​ (2017) 
    Frontiers in Microbiology8 art. 442​.​ DOI: https://doi.org/10.3389/fmicb.2017.00442 
    Details  DOI  PMID  PMC  WoS 
  • 2017 Journal Article
    ​ ​Draft Genome Sequence of Pseudomonas putida Strain GM4FR, an Endophytic Bacterium Isolated from Festuca rubra L​
    Wemheuer, F. ; Hollensteiner, J. ; Poehlein, A. ; Granzow, S.; Daniel, R. ; Vidal, S.   & Wemheuer, B. ​ (2017) 
    Genome Announcements5(13).​ DOI: https://doi.org/10.1128/genomeA.00086-17 
    Details  DOI  PMID  PMC 
  • 2017 Journal Article | 
    ​ ​Bacterial endophyte communities of three agricultural important grass species differ in their response towards management regimes​
    Wemheuer, F. ; Kaiser, K. ; Karlovsky, P. ; Daniel, R. ; Vidal, S.   & Wemheuer, B. ​ (2017) 
    Scientific Reports7 art. 40914​.​ DOI: https://doi.org/10.1038/srep40914 
    Details  DOI  PMID  PMC  WoS 
  • 2016 Journal Article
    ​ ​Complete Genome Sequence of the Amino Acid-Fermenting Clostridium propionicum X2 (DSM 1682)​
    Poehlein, A. ; Schlien, K.; Chowdhury, N. P.; Gottschalk, G. ; Buckel, W. & Daniel, R. ​ (2016) 
    Genome Announcements4(2).​ DOI: https://doi.org/10.1128/genomeA.00294-16 
    Details  DOI 
  • 2016 Journal Article
    ​ ​First Insights into the Genome Sequence of the Halophilic Archaeon Halalkalicoccus paucihalophilus (DSM 24557)​
    Poehlein, A. ; Mucek, K.; Enders, M.; Pankok, F. & Daniel, R. ​ (2016) 
    Genome Announcements4(3).​ DOI: https://doi.org/10.1128/genomeA.00382-16 
    Details  DOI 
  • 2016 Journal Article
    ​ ​First Insights into the Draft Genome of Clostridium colicanis DSM 13634, Isolated from Canine Feces​
    Poehlein, A. ; Schilling, T.; Bhaskar Sathya Narayanan, U. & Daniel, R. ​ (2016) 
    Genome Announcements4(3).​ DOI: https://doi.org/10.1128/genomeA.00385-16 
    Details  DOI 
  • 2016 Journal Article
    ​ ​Draft Genome Sequence of the Strict Anaerobe Clostridium neopropionicum X4 (DSM 3847 T )​
    Beck, M. H.; Poehlein, A. ; Bengelsdorf, F. R.; Schiel-Bengelsdorf, B.; Daniel, R.   & Dürre, P.​ (2016) 
    Genome Announcements4(2).​ DOI: https://doi.org/10.1128/genomeA.00209-16 
    Details  DOI 
  • 2016 Journal Article
    ​ ​First Insights into the Genome of the Moderately Thermophilic Bacterium Clostridium tepidiprofundi SG 508 T​
    Poehlein, A. ; Friedrich, I.; Krüger, L. & Daniel, R. ​ (2016) 
    Genome Announcements4(3).​ DOI: https://doi.org/10.1128/genomeA.00379-16 
    Details  DOI 
  • 2016 Journal Article | Research Paper | 
    ​ ​Land-use choices follow profitability at the expense of ecological functions in Indonesian smallholder landscapes​
    Clough, Y. ; Krishna, V. V. ; Corre, M. D. ; Darras, K. ; Denmead, L. H. ; Meijide, A.   & Moser, S. et al.​ (2016) 
    Nature Communications7 art. 13137​.​ DOI: https://doi.org/10.1038/ncomms13137 
    Details  DOI 
  • 2016 Journal Article
    ​ ​Estimates of Soil Bacterial Ribosome Content and Diversity Are Significantly Affected by the Nucleic Acid Extraction Method Employed​
    Wüst, P. K.; Nacke, H.; Kaiser, K. ; Marhan, S.; Sikorski, J.; Kandeler, E. & Daniel, R.  et al.​ (2016) 
    Applied and Environmental Microbiology82(9) pp. 2595​-2607​.​ DOI: https://doi.org/10.1128/AEM.00019-16 
    Details  DOI  PMID  PMC  WoS 
  • 2016 Journal Article
    ​ ​Role of Wax Ester Synthase/Acyl Coenzyme A:Diacylglycerol Acyltransferase in Oleaginous Streptomyces sp. Strain G25​
    Röttig, A.; Strittmatter, C. S.; Schauer, J.; Hiessl, S.; Poehlein, A. ; Daniel, R.   & Steinbüchel, A.​ (2016) 
    Applied and Environmental Microbiology82(19) pp. 5969​-5981​.​ DOI: https://doi.org/10.1128/AEM.01719-16 
    Details  DOI  PMID  PMC  WoS 
  • 2016 Journal Article
    ​ ​Genome Sequence of the Autotrophic Acetogen Clostridium magnum DSM 2767​
    Uhlig, R.; Poehlein, A. ; Fischer, R.-J.; Daniel, R.   & Bahl, H.​ (2016) 
    Genome Announcements4(3).​ DOI: https://doi.org/10.1128/genomeA.00464-16 
    Details  DOI 
  • 2016 Journal Article
    ​ ​Genome Sequence of the Acetogenic Bacterium Acetobacterium wieringae DSM 1911 T​
    Poehlein, A. ; Bengelsdorf, F. R.; Schiel-Bengelsdorf, B.; Daniel, R.   & Dürre, P.​ (2016) 
    Genome Announcements4(6).​ DOI: https://doi.org/10.1128/genomeA.01430-16 
    Details  DOI 
  • 2016 Journal Article
    ​ ​Genome Sequence of the Acetogenic Bacterium Butyribacterium methylotrophicum DSM 3468 T​
    Bengelsdorf, F. R.; Poehlein, A. ; Schiel-Bengelsdorf, B.; Daniel, R.   & Dürre, P.​ (2016) 
    Genome Announcements4(6).​ DOI: https://doi.org/10.1128/genomeA.01338-16 
    Details  DOI 
  • 2016 Journal Article
    ​ ​Genome Sequence of the Poly-3-Hydroxybutyrate Producer Clostridium acetireducens DSM 10703​
    Flüchter, S.; Poehlein, A. ; Schiel-Bengelsdorf, B.; Daniel, R.   & Dürre, P.​ (2016) 
    Genome Announcements4(6).​ DOI: https://doi.org/10.1128/genomeA.01399-16 
    Details  DOI 
  • 2016 Journal Article
    ​ ​Biogeography and environmental genomics of the Roseobacter-affiliated pelagic CHAB-I-5 lineage​
    Billerbeck, S.; Wemheuer, B. ; Voget, S.; Poehlein, A. ; Giebel, H.-A.; Brinkhoff, T. & Gram, L. et al.​ (2016) 
    Nature Microbiology1(7) art. 16063​.​ DOI: https://doi.org/10.1038/nmicrobiol.2016.63 
    Details  DOI  PMID  PMC  WoS 
  • 2016 Journal Article | 
    ​ ​Driving forces of soil bacterial community structure, diversity, and function in temperate grasslands and forests​
    Kaiser, K. ; Wemheuer, B. ; Korolkow, V.; Wemheuer, F. ; Nacke, H.; Schöning, I. & Schrumpf, M. et al.​ (2016) 
    Scientific Reports6 art. 33696​.​ DOI: https://doi.org/10.1038/srep33696 
    Details  DOI  PMID  PMC  WoS 
  • 2016 Journal Article
    ​ ​Distinct compositions of free-living, particle-associated and benthic communities of the Roseobacter group in the North Sea​
    Kanukollu, S.; Wemheuer, B. ; Herber, J.; Billerbeck, S.; Lucas, J.; Daniel, R.   & Simon, M. et al.​ (2016) 
    FEMS Microbiology Ecology92(1) art. fiv145​.​ DOI: https://doi.org/10.1093/femsec/fiv145 
    Details  DOI  WoS 
  • 2016 Journal Article | 
    ​ ​Genome sequence of Shinella sp strain DD12, isolated from homogenized guts of starved Daphnia magna​
    Poehlein, A. ; Freese, H.; Daniel, R.   & Simeonova, D. D.​ (2016) 
    Standards in Genomic Sciences11.​ DOI: https://doi.org/10.1186/s40793-015-0129-3 
    Details  DOI  PMID  PMC  WoS 
  • 2016 Journal Article | 
    ​ ​Deciphering associations between dissolved organic molecules and bacterial communities in a pelagic marine system​
    Osterholz, H.; Singer, G.; Wemheuer, B. ; Daniel, R. ; Simon, M.; Niggemann, J. & Dittmar, T.​ (2016) 
    The ISME Journal10(7) pp. 1717​-1730​.​ DOI: https://doi.org/10.1038/ismej.2015.231 
    Details  DOI  PMID  PMC  WoS 
  • 2016 Journal Article | 
    ​ ​Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies​
    Güllert, S.; Fischer, M. A.; Turaev, D.; Noebauer, B.; Ilmberger, N.; Wemheuer, B.   & Alawi, M. et al.​ (2016) 
    Biotechnology for Biofuels9 art. 121​.​ DOI: https://doi.org/10.1186/s13068-016-0534-x 
    Details  DOI  PMID  PMC  WoS 
  • 2016 Journal Article
    ​ ​Whole-Genome Draft Sequences of Six Commensal Fecal and Six Mastitis-Associated Escherichia coli Strains of Bovine Origin: TABLE 1​
    Leimbach, A.; Poehlein, A. ; Witten, A.; Wellnitz, O.; Shpigel, N.; Petzl, W. & Zerbe, H. et al.​ (2016) 
    Genome Announcements4(4).​ DOI: https://doi.org/10.1128/genomeA.00753-16 
    Details  DOI 
  • 2016 Journal Article
    ​ ​Complete Genome Sequence of Bacillus subtilis subsp. subtilis Strain ∆6​
    Reuß, D. R.; Thürmer, A.; Daniel, R. ; Quax, W. J. & Stülke, J. ​ (2016) 
    Genome Announcements4(4).​ DOI: https://doi.org/10.1128/genomeA.00759-16 
    Details  DOI 
  • 2016 Journal Article
    ​ ​Genome Sequence of the Facultative Anaerobe Oerskovia enterophila DFA-19 (DSM 43852 T )​
    Jag, V.; Poehlein, A. ; Bengelsdorf, F. R.; Daniel, R.   & Dürre, P.​ (2016) 
    Genome Announcements4(5).​ DOI: https://doi.org/10.1128/genomeA.00973-16 
    Details  DOI 
  • 2016 Journal Article
    ​ ​A Terpene Synthase Is Involved in the Synthesis of the Volatile Organic Compound Sodorifen of Serratia plymuthica 4Rx13​
    Domik, D.; Thürmer, A.; Weise, T.; Brandt, W.; Daniel, R.   & Piechulla, B.​ (2016) 
    Frontiers in Microbiology7.​ DOI: https://doi.org/10.3389/fmicb.2016.00737 
    Details  DOI 
  • 2016 Journal Article | 
    ​ ​Trophic and Non-Trophic Interactions in a Biodiversity Experiment Assessed by Next-Generation Sequencing​
    Tiede, J. ; Wemheuer, B. ; Traugott, M.; Daniel, R. ; Tscharntke, T. ; Ebeling, A. & Scherber, C. ​ (2016) 
    PLOS ONE11(2) art. e0148781​.​ DOI: https://doi.org/10.1371/journal.pone.0148781 
    Details  DOI  PMID  PMC 
  • 2016 Conference Paper
    ​ ​Plant diversity affects multitrophic interactions in an experimental grassland​
    Tiede, J. ; Wemheuer, B. ; Traugott, M.; Daniel, R. ; Tscharntke, T. ; Ebeling, A. & Scherber, C. ​ (2016)
    ​150 years of Ecology - lessons for the future pp. 295​-295. ​Annual Meeting of the Ecological Society of Germany, Austria and Switzerland​, Marburg.
    Marburg​: Gesellschaft für Ökologie.
    Details 
  • 2015 Conference Abstract
    ​ ​MICROALGAE COMMUNITIES IN ANTARCTIC SOILS: CHANGES ALONG SOIL DEVELOPMENTAL STAGES AND TESTING FOR GEOGRAPHICAL DISTRIBUTION​
    Rybalka, N.; Boy, J.; Nacke, H.; Daniel, R.   & Friedl, T. ​ (2015)
    European Journal of Phycology50 
    Abingdon​: Taylor & Francis Ltd.
    Details  WoS 
  • 2015 Journal Article | 
    ​ ​Effects of Fertilization and Sampling Time on Composition and Diversity of Entire and Active Bacterial Communities in German Grassland Soils​
    Herzog, S.; Wemheuer, F. ; Wemheuer, B.   & Daniel, R. ​ (2015) 
    PLoS ONE10(12) art. e0145575​.​ DOI: https://doi.org/10.1371/journal.pone.0145575 
    Details  DOI  PMID  PMC  WoS 
  • 2015 Journal Article | 
    ​ ​Adaptation of an abundant Roseobacter RCA organism to pelagic systems revealed by genomic and transcriptomic analyses​
    Voget, S.; Wemheuer, B. ; Brinkhoff, T.; Vollmers, J.; Dietrich, S.; Giebel, H.-A. & Beardsley, C. et al.​ (2015) 
    The ISME Journal9(2) pp. 371​-384​.​ DOI: https://doi.org/10.1038/ismej.2014.134 
    Details  DOI  PMID  PMC  WoS 
  • 2015 Journal Article | 
    ​ ​Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data​
    Aßhauer, K. P.; Wemheuer, B. ; Daniel, R.   & Meinicke, P. ​ (2015) 
    Bioinformatics31(17) pp. 2882​-2884​.​ DOI: https://doi.org/10.1093/bioinformatics/btv287 
    Details  DOI  PMID  PMC  WoS 
  • 2015 Journal Article | 
    ​ ​The green impact: bacterioplankton response toward a phytoplankton spring bloom in the southern North Sea assessed by comparative metagenomic and metatranscriptomic approaches​
    Wemheuer, B. ; Wemheuer, F. ; Hollensteiner, J. ; Meyer, F.-D.; Voget, S. & Daniel, R. ​ (2015) 
    Frontiers in Microbiology6 art. 805​.​ DOI: https://doi.org/10.3389/fmicb.2015.00805 
    Details  DOI  PMID  PMC  WoS 
  • 2015 Journal Article | 
    ​ ​Genome sequence of Pedobacter glucosidilyticus DD6b, isolated from zooplankton Daphnia magna​
    Poehlein, A. ; Daniel, R.   & Simeonova, D. D.​ (2015) 
    Standards in Genomic Sciences10 art. 100​.​ DOI: https://doi.org/10.1186/s40793-015-0086-x 
    Details  DOI  PMID  PMC  WoS 
  • 2015 Journal Article
    ​ ​Metagenomic and Metatranscriptomic Analyses of Bacterial Communities Derived From a Calcifying Karst Water Creek Biofilm and Tufa​
    Schneider, D.; Reimer, A. ; Hahlbrock, A.; Arp, G.   & Daniel, R. ​ (2015) 
    Geomicrobiology Journal32(3-4) pp. 316​-331​.​ DOI: https://doi.org/10.1080/01490451.2014.907376 
    Details  DOI  WoS 
  • 2015 Journal Article
    ​ ​Bacterial community dynamics during polysaccharide degradation at contrasting sites in the Southern and Atlantic Oceans​
    Wietz, M.; Wemheuer, B. ; Simon, H.; Giebel, H.-A.; Seibt, M. A.; Daniel, R.   & Brinkhoff, T. et al.​ (2015) 
    Environmental Microbiology17(10) pp. 3822​-3831​.​ DOI: https://doi.org/10.1111/1462-2920.12842 
    Details  DOI  PMID  PMC  WoS 
  • 2015 Journal Article
    ​ ​Complete genome sequence of the lipase producing strain Burkholderia glumae PG1​
    Voget, S.; Knapp, A.; Poehlein, A. ; Vollstedt, C.; Streit, W. J.; Daniel, R.   & Jaeger, K.-E.​ (2015) 
    Journal of Biotechnology204 pp. 3​-4​.​ DOI: https://doi.org/10.1016/j.jbiotec.2015.03.022 
    Details  DOI  PMID  PMC  WoS 
  • 2014 Conference Paper
    ​ ​Community-level, physiological and genomic characterization of polysaccharide degradation by bacterioplankton from the Southern and Atlantic Oceans​
    Wietz, M.; Wemheuer, B. ; Simon, H.; Giebel, H.-A.; Seibt, M. A.; Daniel, R.   & Mitulla, M. et al.​ (2014)
    ​Gordon Research Conference ‘Marine Microbes’ and ISME-15​, Bentley, USA / Seoul, Korea. DOI: https://doi.org/10.13140/2.1.4778.7527 
    Details  DOI 
  • 2014 Journal Article
    ​ ​Impact of a phytoplankton bloom on the diversity of the active bacterial community in the southern North Sea as revealed by metatranscriptomic approaches​
    Wemheuer, B. ; Güllert, S.; Billerbeck, S.; Giebel, H.-A.; Voget, S.; Simon, M. & Daniel, R. ​ (2014) 
    FEMS Microbiology Ecology87(2) pp. 378​-389​.​ DOI: https://doi.org/10.1111/1574-6941.12230 
    Details  DOI  PMID  PMC  WoS 
  • 2014 Journal Article | 
    ​ ​A Comparative Metagenome Survey of the Fecal Microbiota of a Breast- and a Plant-Fed Asian Elephant Reveals an Unexpectedly High Diversity of Glycoside Hydrolase Family Enzymes​
    Ilmberger, N.; Güllert, S.; Dannenberg, J.; Rabausch, U.; Torres, J.; Wemheuer, B.   & Alawi, M. et al.​ (2014) 
    PLoS One9(9) art. e106707​.​ DOI: https://doi.org/10.1371/journal.pone.0106707 
    Details  DOI  PMID  PMC  WoS 
  • 2014 Journal Article | 
    ​ ​How to Kill the Honey Bee Larva: Genomic Potential and Virulence Mechanisms of Paenibacillus larvae​
    Djukic, M.; Brzuszkiewicz, E. B.; Fünfhaus, A.; Voss, J.; Gollnow, K.; Poppinga, L. & Liesegang, H.  et al.​ (2014) 
    PLoS ONE9(3) art. e90914​.​ DOI: https://doi.org/10.1371/journal.pone.0090914 
    Details  DOI  PMID  PMC 
  • 2014 Journal Article | 
    ​ ​A genome-guided analysis of energy conservation in the thermophilic, cytochrome-free acetogenic bacterium Thermoanaerobacter kivui​
    Hess, V.; Poehlein, A. ; Weghoff, M. C.; Daniel, R.   & Müller, V.​ (2014) 
    BMC Genomics15 art. 1139​.​ DOI: https://doi.org/10.1186/1471-2164-15-1139 
    Details  DOI  PMID  PMC  WoS 
  • 2013 Journal Article
    ​ ​Bacteriohopanepolyols in a stratified cyanobacterial mat from Kiritimati (Christmas Island, Kiribati)​
    Blumenberg, M. ; Arp, G. ; Reitner, J. ; Schneider, D.; Daniel, R.   & Thiel, V. ​ (2013) 
    Organic Geochemistry55 pp. 55​-62​.​ DOI: https://doi.org/10.1016/j.orggeochem.2012.11.004 
    Details  DOI  WoS 
  • 2013 Journal Article
    ​ ​High abundance of heterotrophic prokaryotes in hydrothermal springs of the Azores as revealed by a network of 16S rRNA gene-based methods​
    Sahm, K.; John, P.; Nacke, H.; Wemheuer, B. ; Grote, R.; Daniel, R.   & Antranikian, G.​ (2013) 
    Extremophiles17(4) pp. 649​-662​.​ DOI: https://doi.org/10.1007/s00792-013-0548-2 
    Details  DOI  PMID  PMC  WoS 
  • 2013 Journal Article
    ​ ​Metagenome Survey of a Multispecies and Alga-Associated Biofilm Revealed Key Elements of Bacterial-Algal Interactions in Photobioreactors​
    Krohn-Molt, I.; Wemheuer, B. ; Alawi, M.; Poehlein, A. ; Guellert, S.; Schmeisser, C. & Pommerening-Roeser, A. et al.​ (2013) 
    Applied and Environmental Microbiology79(20) pp. 6196​-6206​.​ DOI: https://doi.org/10.1128/AEM.01641-13 
    Details  DOI  PMID  PMC  WoS 
  • 2013 Journal Article
    ​ ​Thermostable Xylanase and β-Glucanase Derived from the Metagenome of the Avachinsky Crater in Kamchatka (Russia)​
    Mientus, M.; Brady, S.; Angelov, A.; Zimmermann, P.; Wemheuer, B. ; Schuldes, J. & Daniel, R.  et al.​ (2013) 
    Current Biotechnology2(4) pp. 284​-293​.​ DOI: https://doi.org/10.2174/2211550102999131128150257 
    Details  DOI 
  • 2013 Journal Article | 
    ​ ​Microbial Diversity and Biochemical Potential Encoded by Thermal Spring Metagenomes Derived from the Kamchatka Peninsula​
    Wemheuer, B. ; Taube, R.; Akyol, P.; Wemheuer, F.   & Daniel, R. ​ (2013) 
    Archaea, art. 136714​.​ DOI: https://doi.org/10.1155/2013/136714 
    Details  DOI  WoS 
  • 2013 Journal Article
    ​ ​Roots from beech (Fagus sylvatica L.) and ash (Fraxinus excelsior L.) differentially affect soil microorganisms and carbon dynamics​
    Cesarz, S. ; Fender, A.-C. ; Beyer, F.; Valtanen, K.; Pfeiffer, B. ; Gansert, D.   & Hertel, D.  et al.​ (2013) 
    Soil Biology and Biochemistry61 pp. 23​-32​.​ DOI: https://doi.org/10.1016/j.soilbio.2013.02.003 
    Details  DOI 
  • 2013 Journal Article | 
    ​ ​Phylogenetic Analysis of a Microbialite-Forming Microbial Mat from a Hypersaline Lake of the Kiritimati Atoll, Central Pacific​
    Schneider, D.; Arp, G. ; Reimer, A. ; Reitner, J.   & Daniel, R. ​ (2013) 
    PLoS ONE8(6) art. e66662​.​ DOI: https://doi.org/10.1371/journal.pone.0066662 
    Details  DOI  PMID  PMC  WoS 
  • 2012 Journal Article | 
    ​ ​RNA-Based Assessment of Diversity and Composition of Active Archaeal Communities in the German Bight​
    Wemheuer, B. ; Wemheuer, F.   & Daniel, R. ​ (2012) 
    Archaea, art. UNSP 695826​.​ DOI: https://doi.org/10.1155/2012/695826 
    Details  DOI  WoS 
  • 2012 Journal Article
    ​ ​Complete Genome Sequence of the B-12-Producing Shimwellia blattae Strain DSM 4481, Isolated from a Cockroach​
    Brzuszkiewicz, E. B.; Waschkowitz, T.; Wiezer, A. & Daniel, R. ​ (2012) 
    Journal of Bacteriology194(16).​ DOI: https://doi.org/10.1128/JB.00829-12 
    Details  DOI  PMID  PMC  WoS 
  • 2012 Journal Article
    ​ ​Complete Genome Sequence of the Broad-Host-Range Strain Sinorhizobium fredii USDA257​
    Schuldes, J.; Orbegoso, M. R.; Schmeisser, C.; Krishnan, H. B.; Daniel, R.   & Streit, W. R.​ (2012) 
    Journal of Bacteriology194(16).​ DOI: https://doi.org/10.1128/JB.00966-12 
    Details  DOI  PMID  PMC  WoS 
  • 2012 Journal Article | 
    ​ ​Fungal soil communities in a young transgenic poplar plantation form a rich reservoir for fungal root communities​
    Danielsen, L.; Thürmer, A.; Meinicke, P. ; Buée, M.; Morin, E.; Martin, F. & Pilate, G. et al.​ (2012) 
    Ecology and Evolution2(8) pp. 1935​-1948​.​ DOI: https://doi.org/10.1002/ece3.305 
    Details  DOI 
  • 2012 Journal Article | 
    ​ ​General Relationships between Abiotic Soil Properties and Soil Biota across Spatial Scales and Different Land-Use Types​
    Birkhofer, K.; Schöning, I.; Alt, F.; Herold, N.; Klarner, B. ; Maraun, M.   & Marhan, S. et al.​ (2012) 
    PLoS ONE7(8) art. e43292​.​ DOI: https://doi.org/10.1371/journal.pone.0043292 
    Details  DOI 
  • 2012 Journal Article
    ​ ​Genome Sequence of Paenibacillus alvei DSM 29, a Secondary Invader during European Foulbrood Outbreaks​
    Djukic, M.; Becker, D.; Poehlein, A. ; Voget, S. & Daniel, R. ​ (2012) 
    Journal of Bacteriology194(22).​ DOI: https://doi.org/10.1128/JB.01698-12 
    Details  DOI  PMID  PMC  WoS 
  • 2011 Journal Article
    ​ ​Genome Sequence of Brevibacillus laterosporus LMG 15441, a Pathogen of Invertebrates​
    Djukic, M.; Poehlein, A. ; Thürmer, A. & Daniel, R. ​ (2011) 
    Journal of Bacteriology193(19) pp. 5535​-5536​.​ DOI: https://doi.org/10.1128/JB.05696-11 
    Details  DOI  PMID  PMC  WoS 
  • 2011 Journal Article
    ​ ​Complete Genome Sequence of Carnobacterium sp 17-4​
    Voget, S.; Klippel, B.; Daniel, R.   & Antranikian, G.​ (2011) 
    Journal of Bacteriology193(13) pp. 3403​-3404​.​ DOI: https://doi.org/10.1128/JB.05113-11 
    Details  DOI  PMID  PMC  WoS 
  • 2011 Journal Article
    ​ ​Complete Genome Sequence of the Type Strain Cupriavidus necator N-1​
    Poehlein, A. ; Kusian, B.; Friedrich, B.; Daniel, R.   & Bowien, B.​ (2011) 
    Journal of Bacteriology193(18).​ DOI: https://doi.org/10.1128/JB.05660-11 
    Details  DOI  PMID  PMC  WoS 
  • 2011 Journal Article
    ​ ​Complete Genome Sequences of the Chemolithoautotrophic Oligotropha carboxidovorans Strains OM4 and OM5​
    Volland, S.; Rachinger, M.; Strittmatter, A. W.; Daniel, R. ; Gottschalk, G.   & Meyer, O.​ (2011) 
    Journal of Bacteriology193(18).​ DOI: https://doi.org/10.1128/JB.05619-11 
    Details  DOI  PMID  PMC  WoS 
  • 2010 Journal Article
    ​ ​Treephyler: fast taxonomic profiling of metagenomes​
    Schreiber, F.; Gumrich, P.; Daniel, R.   & Meinicke, P. ​ (2010) 
    Bioinformatics26(7) pp. 960​-961​.​ DOI: https://doi.org/10.1093/bioinformatics/btq070 
    Details  DOI  PMID  PMC  WoS 
  • 2010 Journal Article
    ​ ​Genome Sequence of the Polysaccharide-Degrading, Thermophilic Anaerobe Spirochaeta thermophila DSM 6192​
    Angelov, A.; Liebl, S.; Ballschmiter, M.; Boemeke, M.; Lehmann, R.; Liesegang, H.   & Daniel, R.  et al.​ (2010) 
    Journal of Bacteriology192(24) pp. 6492​-6493​.​ DOI: https://doi.org/10.1128/JB.01023-10 
    Details  DOI  PMID  PMC  WoS 
  • 2009 Journal Article
    ​ ​Rapid Identification of Genes Encoding DNA Polymerases by Function-Based Screening of Metagenomic Libraries Derived from Glacial Ice​
    Simon, C.; Herath, J.; Rockstroh, S. & Daniel, R. ​ (2009) 
    Applied and Environmental Microbiology75(9) pp. 2964​-2968​.​ DOI: https://doi.org/10.1128/AEM.02644-08 
    Details  DOI  PMID  PMC  WoS 
  • 1996 Journal Article
    ​ ​Cloning, sequencing, and overexpression of the genes encoding coenzyme B12-dependent glycerol dehydratase of Citrobacter freundii​
    Seyfried, M.; Daniel, R.   & Gottschalk, G. ​ (1996) 
    Journal of Bacteriology178(19) pp. 5793​-5796​.​ DOI: https://doi.org/10.1128/JB.178.19.5793-5796.1996 
    Details  DOI 
  • 1992 Journal Article
    ​ ​Growth temperature-dependent activity of glycerol dehydratase in Escherichia coli expressing the Citrobacter freundii dha regulon​
    Daniel, R.   & Gottschalk, G. ​ (1992) 
    FEMS Microbiology Letters100(1-3) pp. 281​-285​.​ DOI: https://doi.org/10.1111/j.1574-6968.1992.tb14053.x 
    Details  DOI  PMID  PMC 

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