Prof. Dr. Michael Habeck

 
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  • 2021 Journal Article
    ​ ​Non‐negative blind deconvolution for signal processing in a CRISPR‐edited iPSC‐cardiomyocyte model of dilated cardiomyopathy​
    Xu, H.; Wali, R.; Cheruiyot, C.; Bodenschatz, J.; Hasenfuss, G. ; Janshoff, A.   & Habeck, M.  et al.​ (2021) 
    FEBS Letters,.​
    Details  DOI 
  • 2020 Journal Article
    ​ ​Architecture of the flexible tail tube of bacteriophage SPP1​
    Zinke, M.; Sachowsky, K. A. A.; Öster, C.; Zinn-Justin, S.; Ravelli, R.; Schröder, G. F. & Habeck, M.  et al.​ (2020) 
    Nature Communications11(1).​
    Details  DOI 
  • 2020 Journal Article
    ​ ​Stability of doubly-intractable distributions​
    Habeck, M. ; Rudolf, D.   & Sprungk, B.​ (2020) 
    Electronic Communications in Probability25(0).​
    Details  DOI 
  • 2020 Journal Article
    ​ ​Bayesian inference of chromatin structure ensembles from population-averaged contact data​
    Carstens, S.; Nilges, M. & Habeck, M. ​ (2020) 
    Proceedings of the National Academy of Sciences117(14) pp. 7824​-7830​.​
    Details  DOI 
  • 2019 Journal Article
    ​ ​Auto-regulation of Rab5 GEF activity in Rabex5 by allosteric structural changes, catalytic core dynamics and ubiquitin binding​
    Lauer, J.; Segeletz, S.; Cezanne, A.; Guaitoli, G.; Raimondi, F.; Gentzel, M. & Alva, V. et al.​ (2019) 
    eLife8.​
    Details  DOI 
  • 2019 Journal Article
    ​ ​Bayesian Structural Modeling of Large Biomolecular Systems​
    Habeck, M. ​ (2019) 
    Biophysical Journal116(3) pp. 330a​.​
    Details  DOI 
  • 2018 Journal Article
    ​ ​A probabilistic network model for structural transitions in biomolecules​
    Habeck, M.   & Nguyen, T.​ (2018) 
    Proteins86(6) pp. 634​-643​.​
    Details  DOI 
  • 2017 Journal Article | 
    ​ ​Data-driven coarse graining of large biomolecular structures​
    Chen, Y.-L. & Habeck, M. ​ (2017) 
    PloS one12(8) art. e0183057​.​
    Details  DOI  PMID  PMC 
  • 2017 Journal Article | 
    ​ ​An evolutionarily conserved glycine-tyrosine motif forms a folding core in outer membrane proteins.​
    Michalik, M.; Orwick-Rydmark, M.; Habeck, M. ; Alva, V.; Arnold, T. & Linke, D.​ (2017) 
    PLoS One12(8) art. e0182016​.​
    Details  DOI  PMID  PMC 
  • 2017 Journal Article
    ​ ​Bayesian Modeling of Biomolecular Assemblies with Cryo-EM Maps​
    Habeck, M. ​ (2017) 
    Frontiers in Molecular Biosciences4.​
    Details  DOI 
  • 2016 Journal Article | 
    ​ ​Inferential Structure Determination of Chromosomes from Single-Cell Hi-C Data​
    Carstens, S.; Nilges, M. & Habeck, M. ​ (2016) 
    PLoS Computational Biology12(12) art. e1005292​.​
    Details  DOI  PMID  PMC  WoS 
  • 2016 Journal Article
    ​ ​Cooperative binding: a multiple personality​
    Martini, J. W. R.; Diambra, L. & Habeck, M. ​ (2016) 
    Journal of Mathematical Biology72(7) pp. 1747​-1774​.​
    Details  DOI  PMID  PMC  WoS 
  • 2016 Journal Article
    ​ ​The adaptor protein CIN85 assembles intracellular signaling clusters for B cell activation​
    Kühn, J. ; Wong, L. E. ; Pirkuliyeva, S. ; Schulz, K. ; Schwiegk, C. ; Fünfgeld, K. G.   & Keppler, S. et al.​ (2016) 
    Science Signaling9(434) art. ra66​.​
    Details  DOI  PMID  PMC  WoS 
  • 2016 Conference Paper
    ​ ​A probabilistic model for detecting rigid domains in protein structures​
    Thach Nguyen, T. N. & Habeck, M. ​ (2016)
    Bioinformatics32(17) pp. 710​-717. ​15th European Conference on Computational Biology (ECCB)​, The Hague, NETHERLANDS.
    Oxford​: Oxford Univ Press.
    Details  DOI  PMID  PMC  WoS 
  • 2015 Journal Article
    ​ ​Hybrid Structure of the Type 1 Pilus of Uropathogenic Escherichia coli​
    Habenstein, B. ; Loquet, A.; Hwang, S.; Giller, K. ; Vasa, S. K.; Becker, S. & Habeck, M.  et al.​ (2015) 
    Angewandte Chemie International Edition54(40) pp. 11691​-11695​.​
    Details  DOI  PMID  PMC  WoS 
  • 2015 Journal Article
    ​ ​Solid-state NMR Study of the YadA Membrane-Anchor Domain in the Bacterial Outer Membrane​
    Shahid, S. A.; Nagaraj, M.; Chauhan, N.; Franks, T. W.; Bardiaux, B.; Habeck, M.   & Orwick-Rydmark, M. et al.​ (2015) 
    Angewandte Chemie. International Edition54(43) pp. 12602​-12606​.​
    Details  DOI 
  • 2015 Journal Article
    ​ ​Festkörper‐NMR‐Studien an der Membrananker‐Domäne von YadA in der bakteriellen Außenmembran​
    Shahid, S. A.; Nagaraj, M.; Chauhan, N.; Franks, T. W.; Bardiaux, B.; Habeck, M.   & Orwick-Rydmark, M. et al.​ (2015) 
    Angewandte Chemie International Edition54(43) pp. 12602​-12606​.​
    Details  DOI  PMID  PMC  WoS 
  • 2015 Journal Article
    ​ ​Bayesian evidence and model selection​
    Knuth, K. H.; Habeck, M. ; Malakar, N. K.; Mubeen, A. M. & Placek, B.​ (2015) 
    Digital Signal Processing47 pp. 50​-67​.​
    Details  DOI  WoS 
  • 2015 Journal Article
    ​ ​Bayesian Inference of Initial Models in Cryo-Electron Microscopy Using Pseudo-atoms​
    Joubert, P. & Habeck, M. ​ (2015) 
    Biophysical Journal108(5) pp. 1165​-1175​.​
    Details  DOI  PMID  PMC  WoS 
  • 2015 Journal Article
    ​ ​Comparison of the kinetics of different Markov models for ligand binding under varying conditions​
    Martini, J. W. R. & Habeck, M. ​ (2015) 
    The Journal of Chemical Physics142(9) art. 094104​.​
    Details  DOI  PMID  PMC  WoS 
  • 2015 Journal Article
    ​ ​Structure and Evolution of N-domains in AAA Metalloproteases​
    Scharfenberg, F.; Serek-Heuberger, J.; Coles, M.; Hartmann, M. D.; Habeck, M. ; Martin, J. & Lupas, A. N. et al.​ (2015) 
    Journal of Molecular Biology427(4) pp. 910​-923​.​
    Details  DOI 
  • 2015 Conference Abstract
    ​ ​Maximum entropy reconstruction of protein ensembles from structural data​
    Mechelke, M. & Habeck, M. ​ (2015)
    European Biophysics Journal44 ​10th European-Biophysical-Societies-Association (EBSA) European Biophysics Congress​, Dresden, GERMANY.
    New york​: Springer.
    Details  WoS 
  • 2015 Conference Abstract
    ​ ​Bayesian integrative modeling of macromolecular complexes​
    Joubert, P. & Habeck, M. ​ (2015)
    European Biophysics Journal44 ​10th European-Biophysical-Societies-Association (EBSA) European Biophysics Congress​, Dresden, GERMANY.
    New york​: Springer.
    Details  WoS 
  • 2014 Journal Article
    ​ ​Bayesian approach to inverse statistical mechanics​
    Habeck, M. ​ (2014) 
    Physical Review. E89(5) art. 052113​.​
    Details  DOI  PMID  PMC  WoS 
  • 2014 Journal Article
    ​ ​Kinetics or Equilibrium? - A Commentary on a Recent Simulation Study of Semiochemical Dose-Response Curves of Insect Olfactory Sensing​
    Martini, J. W. R. & Habeck, M. ​ (2014) 
    Journal of Chemical Ecology40(11-12) pp. 1163​-1164​.​
    Details  DOI  PMID  PMC  WoS 
  • 2014 Journal Article
    ​ ​Autonomous reconstruction and segmentation of tomographic data​
    Wollgarten, M. & Habeck, M. ​ (2014) 
    Micron63 pp. 20​-27​.​
    Details  DOI  PMID  PMC  WoS 
  • 2014 Journal Article | 
    ​ ​A derivation of the Grand Canonical Partition Function for systems with a finite number of binding sites using a Markov chain model for the dynamics of single molecules​
    Martini, J. W. R.; Habeck, M.   & Schlather, M.​ (2014) 
    Journal of Mathematical Chemistry52(2) pp. 665​-674​.​
    Details  DOI  WoS 
  • 2014 Journal Article | 
    ​ ​Bayesian Weighting of Statistical Potentials in NMR Structure Calculation​
    Mechelke, M. & Habeck, M. ​ (2014) 
    PLoS ONE9(6) art. e100197​.​
    Details  DOI  PMID  PMC  WoS 
  • 2013 Journal Article | 
    ​ ​Confidence-Guided Local Structure Prediction with HHfrag​
    Kalev, I. & Habeck, M. ​ (2013) 
    PLoS ONE8(10) art. e76512​.​
    Details  DOI  PMID  PMC  WoS 
  • 2013 Journal Article
    ​ ​Estimation of Interaction Potentials through the Configurational Temperature Formalism​
    Mechelke, M. & Habeck, M. ​ (2013) 
    Journal of Chemical Theory and Computation9(12) pp. 5685​-5692​.​
    Details  DOI  PMID  PMC  WoS 
  • 2013 Journal Article
    ​ ​Structures of the human and Drosophila 80S ribosome​
    Anger, A. M.; Armache, J.-P.; Berninghausen, O.; Habeck, M. ; Subklewe, M.; Wilson, D. N. & Beckmann, R.​ (2013) 
    Nature497(7447) pp. 80​-85​.​
    Details  DOI 
  • 2013 Journal Article
    ​ ​A probabilistic model for secondary structure prediction from protein chemical shifts​
    Mechelke, M. & Habeck, M. ​ (2013) 
    Proteins: Structure, Function, and Bioinformatics81(6) pp. 984​-993​.​
    Details  DOI 
  • 2012 Journal Article
    ​ ​Inferential NMR/X-ray-Based Structure Determination of a Dibenzo[a,d]cycloheptenone Inhibitor-p38a MAP Kinase Complex in Solution​
    Honndorf, V. S.; Coudevylle, N.; Laufer, S.; Becker, S. ; Griesinger, C.   & Habeck, M. ​ (2012) 
    Angewandte Chemie International Edition51(10) pp. 2359​-2362​.​
    Details  DOI  PMID  PMC  WoS 
  • 2012 Journal Article
    ​ ​Is the C-terminal insertional signal in Gram-negative bacterial outer membrane proteins species-specific or not?​
    Paramasivam, N.; Habeck, M.   & Linke, D.​ (2012) 
    BMC Genomics13(1) art. 510​.​
    Details  DOI 
  • 2012 Journal Article
    ​ ​Structure-Activity Analysis of the Dermcidin-derived Peptide DCD-1L, an Anionic Antimicrobial Peptide Present in Human Sweat​
    Paulmann, M.; Arnold, T.; Linke, D.; Özdirekcan, S.; Kopp, A.; Gutsmann, T. & Kalbacher, H. et al.​ (2012) 
    Journal of Biological Chemistry287(11) pp. 8434​-8443​.​
    Details  DOI 
  • 2012 Journal Article
    ​ ​Membrane-protein structure determination by solid-state NMR spectroscopy of microcrystals​
    Shahid, S. A.; Bardiaux, B.; Franks, W. T.; Krabben, L.; Habeck, M. ; van Rossum, B.-J. & Linke, D.​ (2012) 
    Nature Methods9(12) pp. 1212​-1217​.​
    Details  DOI 
  • 2012 Journal Article
    ​ ​CSB: a Python framework for structural bioinformatics​
    Kalev, I.; Mechelke, M.; Kopec, K. O.; Holder, T.; Carstens, S. & Habeck, M. ​ (2012) 
    Bioinformatics28(22) pp. 2996​-2997​.​
    Details  DOI 
  • 2012 Journal Article
    ​ ​Calibration of Boltzmann distribution priors in Bayesian data analysis​
    Mechelke, M. & Habeck, M. ​ (2012) 
    Physical Review E86(6) art. 066705​.​
    Details  DOI 
  • 2012 Journal Article
    ​ ​Bayesian Estimation of Free Energies From Equilibrium Simulations​
    Habeck, M. ​ (2012) 
    Physical Review Letters109(10) art. 100601​.​
    Details  DOI 
  • 2011 Journal Article
    ​ ​A Blind Deconvolution Approach for Improving the Resolution of Cryo-EM Density Maps​
    Hirsch, M.; Schölkopf, B. & Habeck, M. ​ (2011) 
    Journal of Computational Biology18(3) pp. 335​-346​.​
    Details  DOI 
  • 2011 Journal Article
    ​ ​Combining computational modeling with sparse and low-resolution data​
    Habeck, M.   & Nilges, M.​ (2011) 
    Journal of Structural Biology173(3) pp. 419​.​
    Details  DOI 
  • 2011 Journal Article
    ​ ​HHfrag: HMM-based fragment detection using HHpred​
    Kalev, I. & Habeck, M. ​ (2011) 
    Bioinformatics27(22) pp. 3110​-3116​.​
    Details  DOI 
  • 2011 Journal Article
    ​ ​Statistical mechanics analysis of sparse data​
    Habeck, M. ​ (2011) 
    Journal of Structural Biology173(3) pp. 541​-548​.​
    Details  DOI 
  • 2010 Journal Article
    ​ ​Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution​
    Armache, J.-P.; Jarasch, A.; Anger, A. M.; Villa, E.; Becker, T.; Bhushan, S. & Jossinet, F. et al.​ (2010) 
    Proceedings of the National Academy of Sciences107(46) pp. 19748​-19753​.​
    Details  DOI 
  • 2010 Journal Article
    ​ ​Robust probabilistic superposition and comparison of protein structures​
    Mechelke, M. & Habeck, M. ​ (2010) 
    BMC Bioinformatics11(1) art. 363​.​
    Details  DOI 
  • 2010 Journal Article
    ​ ​Localization of eukaryote-specific ribosomal proteins in a 5.5-A cryo-EM map of the 80S eukaryotic ribosome​
    Armache, J.-P.; Jarasch, A.; Anger, A. M.; Villa, E.; Becker, T.; Bhushan, S. & Jossinet, F. et al.​ (2010) 
    Proceedings of the National Academy of Sciences of the United States of America107(46) pp. 19754​-19759​.​
    Details  DOI 
  • 2009 Journal Article
    ​ ​The GD box: A widespread noncontiguous supersecondary structural element​
    Alva, V.; Dunin-Horkawicz, S.; Habeck, M. ; Coles, M. & Lupas, A. N.​ (2009) 
    Protein Science18(9) pp. 1961​-1966​.​
    Details  DOI 
  • 2009 Journal Article
    ​ ​Influence of different assignment conditions on the determination of symmetric homodimeric structures with ARIA​
    Bardiaux, B.; Bernard, A.; Rieping, W.; Habeck, M. ; Malliavin, T. E. & Nilges, M.​ (2009) 
    Proteins: Structure, Function, and Bioinformatics75(3) pp. 569​-585​.​
    Details  DOI 
  • 2009 Journal Article
    ​ ​Structure and Activity of the N-Terminal Substrate Recognition Domains in Proteasomal ATPases​
    Djuranovic, S.; Hartmann, M. D.; Habeck, M. ; Ursinus, A.; Zwickl, P.; Martin, J. & Lupas, A. N. et al.​ (2009) 
    Molecular Cell34(5) pp. 580​-590​.​
    Details  DOI 
  • 2009 Journal Article
    ​ ​Investigation Of Electrogenic Partial Reactions In Detergent-solubilized Na,K-ATPase​
    Habeck, M.   & Apell, H.-J.​ (2009) 
    Biophysical Journal96(3) pp. 145a​.​
    Details  DOI 
  • 2009 Journal Article
    ​ ​Generation of three-dimensional random rotations in fitting and matching problems​
    Habeck, M. ​ (2009) 
    Computational Statistics24(4) pp. 719​-731​.​
    Details  DOI 
  • 2008 Journal Article
    ​ ​Structure of the human voltage-dependent anion channel​
    Bayrhuber, M.; Meins, T.; Habeck, M. ; Becker, S. ; Giller, K. ; Villinger, S.   & Vonrhein, C. et al.​ (2008) 
    Proceedings of the National Academy of Sciences105(40) pp. 15370​-15375​.​
    Details  DOI  PMID  PMC  WoS 
  • 2008 Journal Article
    ​ ​Comparative Analysis of Structural and Dynamic Properties of the Loaded and Unloaded Hemophore HasA: Functional Implications​
    Wolff, N.; Izadi-Pruneyre, N.; Couprie, J.; Habeck, M. ; Linge, J.; Rieping, W. & Wandersman, C. et al.​ (2008) 
    Journal of Molecular Biology376(2) pp. 517​-525​.​
    Details  DOI 
  • 2008 Journal Article
    ​ ​Graphical analysis of NMR structural quality and interactive contact map of NOE assignments in ARIA​
    Bardiaux, B.; Bernard, A.; Rieping, W.; Habeck, M. ; Malliavin, T. E & Nilges, M.​ (2008) 
    BMC Structural Biology8(1) pp. 30​.​
    Details  DOI 
  • 2008 Journal Article
    ​ ​ISD: a software package for Bayesian NMR structure calculation​
    Rieping, W.; Nilges, M. & Habeck, M. ​ (2008) 
    Bioinformatics24(8) pp. 1104​-1105​.​
    Details  DOI 
  • 2008 Journal Article
    ​ ​Probabilistic structure calculation​
    Nilges, M.; Habeck, M.   & Rieping, W.​ (2008) 
    Comptes Rendus Chimie11(4-5) pp. 356​-369​.​
    Details  DOI 
  • 2008 Journal Article
    ​ ​Mixture models for protein structure ensembles​
    Hirsch, M. & Habeck, M. ​ (2008) 
    Bioinformatics24(19) pp. 2184​-2192​.​
    Details  DOI 
  • 2008 Journal Article
    ​ ​Accurate NMR Structures Through Minimization of an Extended Hybrid Energy​
    Nilges, M.; Bernard, A.; Bardiaux, B.; Malliavin, T.; Habeck, M.   & Rieping, W.​ (2008) 
    Structure16(9) pp. 1305​-1312​.​
    Details  DOI 
  • 2007 Journal Article
    ​ ​A unifying probabilistic framework for analyzing residual dipolar couplings​
    Habeck, M. ; Nilges, M. & Rieping, W.​ (2007) 
    Journal of Biomolecular NMR40(2) pp. 135​-144​.​
    Details  DOI 
  • 2007 Journal Article
    ​ ​Bayesian Reconstruction of the Density of States​
    Habeck, M. ​ (2007) 
    Physical Review Letters98(20) art. 200601​.​
    Details  DOI 
  • 2006 Journal Article
    ​ ​NMR in the SPINE structural proteomics project​
    Ab, E.; Atkinson, A. R.; Banci, L.; Bertini, I.; Ciofi-Baffoni, S.; Brunner, K. & Diercks, T. et al.​ (2006) 
    Acta Crystallographica Section D Biological Crystallography62 pp. 1150​-1161​.​
    Details  DOI  PMID  PMC  WoS 
  • 2006 Journal Article
    ​ ​Structure validation of the Josephin domain of ataxin-3: Conclusive evidence for an open conformation​
    Nicastro, G.; Habeck, M. ; Masino, L.; Svergun, D. I. & Pastore, A.​ (2006) 
    Journal of Biomolecular NMR36(4) pp. 267​-277​.​
    Details  DOI 
  • 2006 Journal Article
    ​ ​ARIA2: Automated NOE assignment and data integration in NMR structure calculation​
    Rieping, W.; Habeck, M. ; Bardiaux, B.; Bernard, A.; Malliavin, T. E. & Nilges, M.​ (2006) 
    Bioinformatics23(3) pp. 381​-382​.​
    Details  DOI 
  • 2006 Journal Article
    ​ ​Error distribution derived NOE distance restraints​
    Nilges, M.; Habeck, M. ; O'Donoghue, S. I. & Rieping, W.​ (2006) 
    Proteins: Structure, Function, and Bioinformatics64(3) pp. 652​-664​.​
    Details  DOI 
  • 2006 Journal Article
    ​ ​Weighting of experimental evidence in macromolecular structure determination​
    Habeck, M. ; Rieping, W. & Nilges, M.​ (2006) 
    Proceedings of the National Academy of Sciences103(6) pp. 1756​-1761​.​
    Details  DOI 
  • 2005 Journal Article
    ​ ​Modeling Errors in NOE Data with a Log-normal Distribution Improves the Quality of NMR Structures​
    Rieping, W.; Habeck, M.   & Nilges, M.​ (2005) 
    Journal of the American Chemical Society127(46) pp. 16026​-16027​.​
    Details  DOI 
  • 2005 Journal Article
    ​ ​Replica-Exchange Monte Carlo Scheme for Bayesian Data Analysis​
    Habeck, M. ; Nilges, M. & Rieping, W.​ (2005) 
    Physical Review Letters94(1) art. 018105​.​
    Details  DOI 
  • 2005 Journal Article
    ​ ​Inferential Structure Determination​
    Rieping, W.; Habeck, M.   & Nilges, M.​ (2005) 
    Science309(5732) pp. 303​-306​.​
    Details  DOI 
  • 2005 Journal Article
    ​ ​Bayesian estimation of Karplus parameters and torsion angles from three-bond scalar couplings constants​
    Habeck, M. ; Rieping, W. & Nilges, M.​ (2005) 
    Journal of Magnetic Resonance177(1) pp. 160​-165​.​
    Details  DOI 
  • 2005 Journal Article
    ​ ​Bayesian inference applied to macromolecular structure determination​
    Habeck, M. ; Nilges, M. & Rieping, W.​ (2005) 
    Physical Review E72(3) art. 031912​.​
    Details  DOI 
  • 2004 Journal Article
    ​ ​Extension of the mutation spectrum in Friedreich's ataxia: detection of an exon deletion and novel missense mutations​
    Zühlke, C H; Dalski, A.; Habeck, M. ; Straube, K.; Hedrich, K.; Hoeltzenbein, M. & Konstanzer, A. et al.​ (2004) 
    European Journal of Human Genetics12(11) pp. 979​-982​.​
    Details  DOI 
  • 2004 Journal Article
    ​ ​Correction of spin diffusion during iterative automated NOE assignment​
    Linge, J. P; Habeck, M. ; Rieping, W. & Nilges, M.​ (2004) 
    Journal of Magnetic Resonance167(2) pp. 334​-342​.​
    Details  DOI 
  • 2003 Journal Article
    ​ ​ARIA: automated NOE assignment and NMR structure calculation​
    Linge, J. P.; Habeck, M. ; Rieping, W. & Nilges, M.​ (2003) 
    Bioinformatics19(2) pp. 315​-316​.​
    Details  DOI 
  • 2001 Journal Article
    ​ ​Structural and functional studies of titin’s fn3 modules reveal conserved surface patterns and binding to myosin S1 - a possible role in the frank-starling mechanism of the heart​
    Muhle-Goll, C.; Habeck, M. ; Cazorla, O.; Nilges, M.; Labeit, S. & Granzier, H.​ (2001) 
    Journal of Molecular Biology313(2) pp. 431​-447​.​
    Details  DOI 

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