Dr. Jan Huisken

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unigoe
 

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  • 2024 | Lecture | 
    ​ ​Ein Flamingo geht auf Reisen: Mit dem Lichtblattmikroskop biologische Entwicklungsprozesse entschlüsseln​
    Huisken, J. ​ (2024)
    Herz und Hirn - Gemeinsam im Fokus; 2024-02-06​, Göttingen.
    ​Details 
  • 2021 | Preprint
    ​ ​Spatial transcriptomics reveals antiparasitic targets associated with essential behaviors in the human parasite Brugia malayi​
    Airs, P. M.; Vaccaro, K.; Gallo, K. J.; Dinguirard, N.; Heimark, Z. W.; Wheeler, N. J.& He, J. et al.​ (2021). DOI: https://doi.org/10.1101/2021.08.24.456436 
    ​Details  DOI 
  • 2021 | Journal Article | Research Paper
    ​ ​Tutorial: practical considerations for tissue clearing and imaging​
    Weiss, K. R.; Voigt, F. F.; Shepherd, D. P. & Huisken, J. ​ (2021) 
    Nature Protocols, 16(6) pp. 2732​-2748​.​ DOI: https://doi.org/10.1038/s41596-021-00502-8 
    ​Details  DOI  PMID  PMC 
  • 2020 | Journal Article | Research Paper
    ​ ​Label-free redox imaging of patient-derived organoids using selective plane illumination microscopy​
    Favreau, P. F.; He, J.; Gil, D. A.; Deming, D. A.; Huisken, J.   & Skala, M. C.​ (2020) 
    Biomedical Optics Express, 11(5) pp. 2591​-2606​.​ DOI: https://doi.org/10.1364/BOE.389164 
    ​Details  DOI  PMID  PMC 
  • 2020 | Journal Article | Research Paper | 
    ​ ​Long-term in vivo imaging reveals tumor-specific dissemination and captures host tumor interaction in zebrafish xenografts​
    Asokan, N.; Daetwyler, S.; Bernas, S. N.; Schmied, C.; Vogler, S.; Lambert, K. & Wobus, M. et al.​ (2020) 
    Scientific Reports, 10(1) pp. 13254​.​ DOI: https://doi.org/10.1038/s41598-020-69956-2 
    ​Details  DOI  PMID  PMC 
  • 2020 | Journal Article | Research Paper | 
    ​ ​Image quality guided smart rotation improves coverage in microscopy​
    He, J. & Huisken, J. ​ (2020) 
    Nature Communications, 11(1) pp. 150​.​ DOI: https://doi.org/10.1038/s41467-019-13821-y 
    ​Details  DOI  PMID  PMC 
  • 2019 | Journal Article | Research Paper
    ​ ​3Dscript: animating 3D/4D microscopy data using a natural-language-based syntax​
    Schmid, B.; Tripal, P.; Fraaß, T.; Kersten, C.; Ruder, B.; Grüneboom, A. & Huisken, J.  et al.​ (2019) 
    Nature Methods, 16(4) pp. 278​-280​.​ DOI: https://doi.org/10.1038/s41592-019-0359-1 
    ​Details  DOI  PMID  PMC 
  • 2019 | Journal Article | Research Paper
    ​ ​Multi-sample SPIM image acquisition, processing and analysis of vascular growth in zebrafish​
    Daetwyler, S.; Günther, U.; Modes, C. D.; Harrington, K. & Huisken, J. ​ (2019) 
    Development (Cambridge), 146(6).​ DOI: https://doi.org/10.1242/dev.173757 
    ​Details  DOI  PMID  PMC 
  • 2019 | Journal Article | Research Paper | 
    ​ ​Loss of the Polycomb group protein Rnf2 results in derepression of tbx-transcription factors and defects in embryonic and cardiac development​
    Chrispijn, N. D.; Elurbe, D. M.; Mickoleit, M.; Aben, M.; de Bakker, D. E. M.; Andralojc, K. M. & Huisken, J.  et al.​ (2019) 
    Scientific Reports, 9(1) pp. 4327​.​ DOI: https://doi.org/10.1038/s41598-019-40867-1 
    ​Details  DOI  PMID  PMC 
  • 2019 | Journal Article | Research Paper | 
    ​ ​Multi-scale imaging and analysis identify pan-embryo cell dynamics of germlayer formation in zebrafish​
    Shah, G.; Thierbach, K.; Schmid, B.; Waschke, J.; Reade, A.; Hlawitschka, M. & Roeder, I. et al.​ (2019) 
    Nature Communications, 10(1) pp. 5753​.​ DOI: https://doi.org/10.1038/s41467-019-13625-0 
    ​Details  DOI  PMID  PMC 
  • 2018 | Preprint
    ​ ​Basal extrusion drives cell invasion and mechanical stripping of E-cadherin​
    Fadul, J.; Slattum, G. M.; Redd, N. M.; Jin, M. F.; Redd, M. J.; Daetwyler, S.& Hedeen, D. et al.​ (2018). DOI: https://doi.org/10.1101/463646 
    ​Details  DOI 
  • 2018 | Journal Article | Research Paper | 
    ​ ​Continuous addition of progenitors forms the cardiac ventricle in zebrafish​
    Felker, A.; Prummel, K. D.; Merks, A. M.; Mickoleit, M.; Brombacher, E. C.; Huisken, J.   & Panáková, D. et al.​ (2018) 
    Nature Communications, 9(1) pp. 2001​.​ DOI: https://doi.org/10.1038/s41467-018-04402-6 
    ​Details  DOI  PMID  PMC 
  • 2018 | Journal Article | Research Paper | 
    ​ ​Dynamic and non-contact 3D sample rotation for microscopy​
    Berndt, F.; Shah, G.; Power, R. M.; Brugués, J. & Huisken, J. ​ (2018) 
    Nature Communications, 9(1) pp. 5025​.​ DOI: https://doi.org/10.1038/s41467-018-07504-3 
    ​Details  DOI  PMID  PMC 
  • 2018 | Journal Article | Research Paper | 
    ​ ​Adaptable, illumination patterning light sheet microscopy​
    Power, R. M. & Huisken, J. ​ (2018) 
    Scientific Reports, 8(1) pp. 9615​.​ DOI: https://doi.org/10.1038/s41598-018-28036-2 
    ​Details  DOI  PMID  PMC 
  • 2017 | Journal Article | Research Paper
    ​ ​A guide to light-sheet fluorescence microscopy for multiscale imaging​
    Power, R. M. & Huisken, J. ​ (2017) 
    Nature Methods, 14(4) pp. 360​-373​.​ DOI: https://doi.org/10.1038/nmeth.4224 
    ​Details  DOI  PMID  PMC 
  • 2017 | Preprint
    ​ ​Continuous high-resolution in vivo imaging reveals tumor-specific dissemination in an embryonic zebrafish xenograft model​
    Asokan, N.; Daetwyler, S.; Bernas, S. N.; Schmied, C.; Vogler, S.; Lambert, K.& Wobus, M. et al.​ (2017). DOI: https://doi.org/10.1101/215921 
    ​Details  DOI 
  • 2017 | Journal Article | Research Paper | 
    ​ ​Cell-accurate optical mapping across the entire developing heart​
    Weber, M.; Scherf, N.; Meyer, A. M.; Panáková, D.; Kohl, P. & Huisken, J. ​ (2017) 
    eLife, 6.​ DOI: https://doi.org/10.7554/eLife.28307 
    ​Details  DOI  PMID  PMC 
  • 2015 | Journal Article | Research Paper | 
    ​ ​Hyperspectral light sheet microscopy​
    Jahr, W.; Schmid, B.; Schmied, C.; Fahrbach, F. O. & Huisken, J. ​ (2015) 
    Nature Communications, 6(1) pp. 7990​.​ DOI: https://doi.org/10.1038/ncomms8990 
    ​Details  DOI  PMID  PMC 
  • 2015 | Journal Article | Research Paper | 
    ​ ​The smart and gentle microscope​
    Scherf, N. & Huisken, J. ​ (2015) 
    Nature Biotechnology, 33(8) pp. 815​-818​.​ DOI: https://doi.org/10.1038/nbt.3310 
    ​Details  DOI  PMID  PMC 
  • 2015 | Journal Article | Research Paper
    ​ ​Guide to light-sheet microscopy for adventurous biologists​
    Reynaud, E. G.; Peychl, J.; Huisken, J.   & Tomancak, P.​ (2015) 
    Nature Methods, 12(1) pp. 30​-34​.​ DOI: https://doi.org/10.1038/nmeth.3222 
    ​Details  DOI  PMID  PMC 
  • 2014 | Journal Article | Research Paper
    ​ ​High-resolution reconstruction of the beating zebrafish heart​
    Mickoleit, M.; Schmid, B.; Weber, M.; Fahrbach, F. O.; Hombach, S.; Reischauer, S. & Huisken, J. ​ (2014) 
    Nature Methods, 11(9) pp. 919​-922​.​ DOI: https://doi.org/10.1038/nmeth.3037 
    ​Details  DOI  PMID  PMC 
  • 2012 | Journal Article | Research Paper
    ​ ​Transgenic zebrafish illuminate the dynamics of thyroid morphogenesis and its relationship to cardiovascular development​
    Opitz, R.; Maquet, E.; Huisken, J. ; Antonica, F.; Trubiroha, A.; Pottier, G. & Janssens, V. et al.​ (2012) 
    Developmental Biology, 372(2) pp. 203​-216​.​ DOI: https://doi.org/10.1016/j.ydbio.2012.09.011 
    ​Details  DOI  PMID  PMC 
  • 2012 | Journal Article | Research Paper
    ​ ​Fibrillin-2b regulates endocardial morphogenesis in zebrafish​
    Mellman, K.; Huisken, J. ; Dinsmore, C.; Hoppe, C. & Stainier, D. Y.​ (2012) 
    Developmental Biology, 372(1) pp. 111​-119​.​ DOI: https://doi.org/10.1016/j.ydbio.2012.07.015 
    ​Details  DOI  PMID  PMC 
  • 2012 | Journal Article | Research Paper
    ​ ​Omnidirectional microscopy​
    Weber, M. & Huisken, J. ​ (2012) 
    Nature Methods, 9(7) pp. 656​-657​.​ DOI: https://doi.org/10.1038/nmeth.2022 
    ​Details  DOI  PMID  PMC 
  • 2012 | Journal Article | Research Paper
    ​ ​Slicing embryos gently with laser light sheets​
    Huisken, J. ​ (2012) 
    BioEssays, 34(5) pp. 406​-411​.​ DOI: https://doi.org/10.1002/bies.201100120 
    ​Details  DOI  PMID  PMC 
  • 2011 | Journal Article | Research Paper
    ​ ​Light sheet microscopy for real-time developmental biology​
    Weber, M. & Huisken, J. ​ (2011) 
    Current Opinion in Genetics & Development, 21(5) pp. 566​-572​.​ DOI: https://doi.org/10.1016/j.gde.2011.09.009 
    ​Details  DOI  PMID  PMC 
  • 2010 | Journal Article | Research Paper
    ​ ​Cse1l is a negative regulator of CFTR-dependent fluid secretion​
    Bagnat, M.; Navis, A.; Herbstreith, S.; Brand-Arzamendi, K.; Curado, S.; Gabriel, S. & Mostov, K. et al.​ (2010) 
    Current Biology, 20(20) pp. 1840​-1845​.​ DOI: https://doi.org/10.1016/j.cub.2010.09.012 
    ​Details  DOI  PMID  PMC 
  • 2008 | Journal Article | Research Paper
    ​ ​Regulation of neurocoel morphogenesis by Pard6 gamma b​
    Munson, C.; Huisken, J. ; Bit-Avragim, N.; Kuo, T.; Dong, P. D.; Ober, E. A. & Verkade, H. et al.​ (2008) 
    Developmental Biology, 324(1) pp. 41​-54​.​ DOI: https://doi.org/10.1016/j.ydbio.2008.08.033 
    ​Details  DOI  PMID  PMC 
  • 2008 | Journal Article | Research Paper
    ​ ​Multiple roles for Med12 in vertebrate endoderm development​
    Shin, C. H.; Chung, W.-S.; Hong, S.-K.; Ober, E. A.; Verkade, H.; Field, H. A. & Huisken, J.  et al.​ (2008) 
    Developmental Biology, 317(2) pp. 467​-479​.​ DOI: https://doi.org/10.1016/j.ydbio.2008.02.031 
    ​Details  DOI  PMID  PMC 
  • 2007 | Journal Article | Research Paper
    ​ ​Multi-view image fusion improves resolution in three-dimensional microscopy​
    Swoger, J.; Verveer, P.; Greger, K.; Huisken, J.   & Stelzer, E. H. K.​ (2007) 
    Optics Express, 15(13) pp. 8029​.​ DOI: https://doi.org/10.1364/OE.15.008029 
    ​Details  DOI 
  • 2007 | Journal Article | Research Paper
    ​ ​Cellular and genetic dissection of the cardiac electric system​
    Stainier, D.; Chi, N.; Shaw, R.; Huisken, J. ; Jungblut, B. & Jan, L.​ (2007) 
    Developmental Biology, 306(1) pp. 290​.​ DOI: https://doi.org/10.1016/j.ydbio.2007.03.055 
    ​Details  DOI 
  • 2007 | Journal Article | Research Paper
    ​ ​Even fluorescence excitation by multidirectional selective plane illumination microscopy (mSPIM)​
    Huisken, J.   & Stainier, D. Y. R.​ (2007) 
    Optics Letters, 32(17) pp. 2608​.​ DOI: https://doi.org/10.1364/OL.32.002608 
    ​Details  DOI 
  • 2006 | Book Chapter
    ​ ​Selective Plane Illumination Microscopy​
    Huisken, J. ; Swoger, J.; Lindek, S.& Stelzer, E. H. K.​ (2006)
    In:​Pawley, James B.​ (Ed.), Handbook Of Biological Confocal Microscopy pp. 672​-679. ​Springer. DOI: https://doi.org/10.1007/978-0-387-45524-2_37 
    ​Details  DOI 
  • 2003 | Journal Article | Research Paper
    ​ ​Multiple imaging axis microscopy improves resolution for thick-sample applications​
    Swoger, J.; Huisken, J.   & Stelzer, E. H. K.​ (2003) 
    Optics Letters, 28(18) pp. 1654​.​ DOI: https://doi.org/10.1364/OL.28.001654 
    ​Details  DOI 
  • 2002 | Journal Article | Research Paper
    ​ ​Optical levitation of absorbing particles with a nominally Gaussian laser beam​
    Huisken, J.   & Stelzer, E. H. K.​ (2002) 
    Optics Letters, 27(14) pp. 1223​.​ DOI: https://doi.org/10.1364/OL.27.001223 
    ​Details  DOI 

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