Dr. Martin Kollmar

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  • 2022 | Journal Article | 
    ​ ​Simm D, Popova B, Braus GH, Waack S, Kollmar M. ​Design of typical genes for heterologous gene expression​. ​​Scientific Reports. ​2022;​12​(1). ​doi:10.1038/s41598-022-13089-1. 
    ​Details  DOI 
  • 2019 | Preprint
    ​ ​Simm D, Hatje K, Waack S, Kollmar M. ​Protein function prediction in genomes: Critical assessment of coiled-coil predictions based on protein structure data​. ​​2019. Available from: https://doi.org/10.1101/675025​
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Mühlhausen S, Schmitt HD, Pan, Kuan-Ting, Plessmann U, Urlaub H, Hurst L, et al. ​Endogenous Stochastic Decoding of the CUG Codon by Competing Ser- and Leu-tRNAs in Ascoidea asiatica​. ​​Current biology : CB. ​2018;​28​(13):​​2046-2057.e5​-2057.e5​. ​doi:10.1016/j.cub.2018.04.085. 
    ​Details  DOI  PMID  PMC 
  • 2018 | Journal Article | 
    ​ ​Simm D, Kollmar M. ​Waggawagga-CLI: A command-line tool for predicting stable single α-helices (SAH-domains), and the SAH-domain distribution across eukaryotes​. ​​PLOS ONE. ​2018;​13​(2). ​doi:10.1371/journal.pone.0191924. 
    ​Details  DOI  PMID  PMC 
  • 2017 | Journal Article
    ​ ​Kollmar M, Mühlhausen S. ​Nuclear codon reassignments in the genomics era and mechanisms behind their evolution​. ​​BioEssays : news and reviews in molecular, cellular and developmental biology. ​2017;​39​(5):​​1600221​. ​doi:10.1002/bies.201600221. 
    ​Details  DOI  PMID  PMC 
  • 2017 | Journal Article
    ​ ​Kollmar M, Mühlhausen S. ​How tRNAs dictate nuclear codon reassignments: Only a few can capture non-cognate codons​. ​​RNA biology. ​2017;​14​(3):​​293-299​-299​. ​doi:10.1080/15476286.2017.1279785. 
    ​Details  DOI  PMID  PMC 
  • 2017 | Journal Article | 
    ​ ​Kollmar M, Mühlhausen S. ​Myosin repertoire expansion coincides with eukaryotic diversification in the Mesoproterozoic era​. ​​BMC evolutionary biology. ​2017;​17​(1):​​211​. ​doi:10.1186/s12862-017-1056-2. 
    ​Details  DOI  PMID  PMC 
  • 2017 | Journal Article
    ​ ​Hatje K, Rahman, Raza-Ur, Vidal RO, Simm D, Hammesfahr B, Bansal V, et al. ​The landscape of human mutually exclusive splicing​. ​​Molecular systems biology. ​2017;​13​(12). ​doi:10.15252/msb.20177728. 
    ​Details  DOI  PMID  PMC 
  • 2016 | Journal Article
    ​ ​Mühlhausen S, Findeisen P, Plessmann U, Urlaub H, Kollmar M. ​A novel nuclear genetic code alteration in yeasts and the evolution of codon reassignment in eukaryotes​. ​​Genome research. ​2016;​26​(7):​​945-55​-955​. ​doi:10.1101/gr.200931.115. 
    ​Details  DOI  PMID  PMC 
  • 2015 | Journal Article
    ​ ​Mühlhausen S, Hellkamp M, Kollmar M. ​GenePainter v. 2.0 resolves the taxonomic distribution of intron positions​. ​​Bioinformatics (Oxford, England). ​2015;​31​(8):​​1302-4​-1304​. ​doi:10.1093/bioinformatics/btu798. 
    ​Details  DOI  PMID  PMC 
  • 2014 | Journal Article
    ​ ​Findeisen P, Mühlhausen S, Dempewolf S, Hertzog J, Zietlow A, Carlomagno T, et al. ​Six subgroups and extensive recent duplications characterize the evolution of the eukaryotic tubulin protein family​. ​​Genome biology and evolution. ​2014;​6​(9):​​2274-88​-2288​. ​doi:10.1093/gbe/evu187. 
    ​Details  DOI  PMID  PMC 
  • 2014 | Journal Article
    ​ ​Mühlhausen S, Kollmar M. ​Predicting the fungal CUG codon translation with Bagheera​. ​​BMC genomics. ​2014;​15​(1):​​411​. ​doi:10.1186/1471-2164-15-411. 
    ​Details  DOI  PMID  PMC 
  • 2014 | Journal Article
    ​ ​Mühlhausen S, Kollmar M. ​Molecular phylogeny of sequenced Saccharomycetes reveals polyphyly of the alternative yeast codon usage​. ​​Genome biology and evolution. ​2014;​6​(12):​​3222-37​-3237​. ​doi:10.1093/gbe/evu152. 
    ​Details  DOI  PMID  PMC 
  • 2013 | Journal Article
    ​ ​Mühlhausen S, Kollmar M. ​Whole genome duplication events in plant evolution reconstructed and predicted using myosin motor proteins​. ​​BMC evolutionary biology. ​2013;​13​(1):​​202​. ​doi:10.1186/1471-2148-13-202. 
    ​Details  DOI  PMID  PMC 
  • 2013 | Conference Proceedings
    ​ ​Beißbarth T, Kollmar M, Leha A, Morgenstern B, Schultz, Anne-Kathrin, Waack S, et al.​, editors. ​German Conference on Bioinformatics 2013​. ​​German Conference on Bioinformatics 2013; ​2013-09-10​ - 2013-09-13​; ​​Göttingen. ​2013. ​148 p. (OASIcs;34). 
    ​Details 
  • 2013 | Journal Article | Research Paper
    ​ ​Mazur A, Hammesfahr B, Griesinger C, Lee D, Kollmar M. ​ShereKhan-calculating exchange parameters in relaxation dispersion data from CPMG experiments​. ​​Bioinformatics. ​2013;​29​(14):​​1819​-1820​. ​doi:10.1093/bioinformatics/btt286. 
    ​Details  DOI  PMID  PMC  WoS 

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