Prof. Dr. Burkhard Morgenstern

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  • 2022 | Journal Article | 
    ​ ​Birth, Niklas, Thomas Dencker, and Burkhard Morgenstern. "Insertions and deletions as phylogenetic signal in an alignment-free context​." ​PLOS Computational Biology ​18, no. 8 (2022): ​e1010303​. ​https://doi.org/10.1371/journal.pcbi.1010303.
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  • 2021 | Journal Article
    ​ ​Dieckmann, Anastasia-Lisa, Thomas Riedel, Boyke Bunk, Cathrin Spröer, Jörg Overmann, Uwe Groß, Oliver Bader et al. "Genome and Methylome analysis of a phylogenetic novel Campylobacter coli cluster with C. jejuni introgression​." ​Microbial Genomics ​7, no. 10 (2021): . ​https://doi.org/10.1099/mgen.0.000679.
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  • 2021 | Journal Article | Research Paper | 
    ​ ​Harting, Rebekka, Jessica Starke, Harald Kusch, Stefanie Pöggeler, Isabel Maurus, Rabea Schlüter, Manuel Landesfeind et al. "A 20‐kb lineage‐specific genomic region tames virulence in pathogenic amphidiploid Verticillium longisporum​." ​Molecular Plant Pathology (2021): . ​https://doi.org/10.1111/mpp.13071.
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  • 2020 | Preprint
    ​ ​Leonard, Miriam, Anika Kühn, Rebekka Harting, Isabel Maurus, Alexandra Nagel, Jessica Starke, Harald Kusch et al​. "V. longisporum elicits media-dependent secretome responses with a further capacity to distinguish between plant-related environments​." ​Preprint, submitted ​​2020. https://doi.org/10.1101/2020.02.11.943803.
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  • 2020 | Journal Article
    ​ ​Hosseini, Morteza, Diogo Pratas, Burkhard Morgenstern, and Armando J Pinho. "Smash++: an alignment-free and memory-efficient tool to find genomic rearrangements​." ​GigaScience ​9, no. 5 (2020): . ​https://doi.org/10.1093/gigascience/giaa048.
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  • 2020 | Journal Article | 
    ​ ​Leonard, Miriam, Anika Kühn, Rebekka Harting, Isabel Maurus, Alexandra Nagel, Jessica Starke, Harald Kusch et al. "Verticillium longisporum Elicits Media-Dependent Secretome Responses With Capacity to Distinguish Between Plant-Related Environments​." ​Frontiers in Microbiology ​11 (2020): . ​https://doi.org/10.3389/fmicb.2020.01876.
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  • 2020 | Journal Article | 
    ​ ​Röhling, Sophie, Alexander Linne, Jendrik Schellhorn, Morteza Hosseini, Thomas Dencker, and Burkhard Morgenstern. "The number of k-mer matches between two DNA sequences as a function of k and applications to estimate phylogenetic distances​." ​PLoS One ​15, no. 2 (2020): ​e0228070​. ​https://doi.org/10.1371/journal.pone.0228070.
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  • 2019 | Journal Article | 
    ​ ​Zielezinski, Andrzej, Hani Z. Girgis, Guillaume Bernard, Chris-Andre Leimeister, Kujin Tang, Thomas Dencker, Anna Katharina Lau et al. "Benchmarking of alignment-free sequence comparison methods​." ​Genome Biology ​20, no. 1 (2019): . ​https://doi.org/10.1186/s13059-019-1755-7.
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  • 2019 | Journal Article | 
    ​ ​Lau, Anna-Katharina, Svenja Dörrer, Chris-André Leimeister, Christoph Bleidorn, and Burkhard Morgenstern. "Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage​." ​BMC Bioinformatics ​20, no. Suppl 20 (2019): ​638​. ​https://doi.org/10.1186/s12859-019-3205-7.
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  • 2018 | Journal Article
    ​ ​Leimeister, Chris-André, Thomas Dencker, and Burkhard Morgenstern. "Accurate multiple alignment of distantly related genome sequences using filtered spaced word matches as anchor points​." ​Bioinformatics ​35, no. 2 (2018): ​211​-218​. ​https://doi.org/10.1093/bioinformatics/bty592.
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  • 2018 | Journal Article
    ​ ​Leimeister, Chris-Andre, Jendrik Schellhorn, Svenja Dörrer, Michael Gerth, Christoph Bleidorn, and Burkhard Morgenstern. "Prot-SpaM: fast alignment-free phylogeny reconstruction based on whole-proteome sequences​." ​GigaScience ​8, no. 3 (2018): . ​https://doi.org/10.1093/gigascience/giy148.
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  • 2017 | Journal Article | 
    ​ ​Morgenstern, Burkhard, Svenja Schöbel, and Chris-André Leimeister. "Phylogeny reconstruction based on the length distribution of k-mismatch common substrings​." ​Algorithms for Molecular Biology ​12, no. 1 (2017): ​27​. ​https://doi.org/10.1186/s13015-017-0118-8.
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  • 2017 | Journal Article | 
    ​ ​Leimeister, Chris-Andre, Salma Sohrabi-Jahromi, and Burkhard Morgenstern. "Fast and accurate phylogeny reconstruction using filtered spaced-word matches​." ​Bioinformatics ​33, no. 7 (2017): ​971​-979​. ​https://doi.org/10.1093/bioinformatics/btw776.
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  • 2016 | Journal Article | 
    ​ ​Hahn, Lars, Chris-Andre Leimeister, Rachid Ounit, Stefano Lonardi, and Burkhard Morgenstern. "rasbhari: Optimizing Spaced Seeds for Database Searching, Read Mapping and Alignment-Free Sequence Comparison​." ​PLoS Computational Biology ​12, no. 10 (2016): ​e1005107​. ​https://doi.org/10.1371/journal.pcbi.1005107.
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  • 2015 | Journal Article | 
    ​ ​Kaever, Alexander, Manuel Landesfeind, Kirstin Feussner, Alina Mosblech, Ingo Heilmann, Burkhard Morgenstern, Ivo Feussner, and Peter Meinicke. "MarVis-Pathway: integrative and exploratory pathway analysis of non-targeted metabolomics data​." ​Metabolomics ​11, no. 3 (2015): ​764​-777​. ​https://doi.org/10.1007/s11306-014-0734-y.
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  • 2015 | Journal Article | Research Paper | 
    ​ ​Schmitt-Engel, Christian, Dorothea Schultheis, Jonas Schwirz, Nadi Stroehlein, Nicole Troelenberg, Upalparna Majumdar, Van Anh Dao et al. "The iBeetle large-scale RNAi screen reveals gene functions for insect development and physiology​." ​Nature Communications ​6 (2015): ​7822​. ​https://doi.org/10.1038/ncomms8822.
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  • 2015 | Journal Article | 
    ​ ​Morgenstern, Burkhard, Bingyao Zhu, Sebastian Horwege, and Chris Andre Leimeister. "Estimating evolutionary distances between genomic sequences from spaced-word matches​." ​Algorithms for Molecular Biology ​10 (2015): ​x​. ​https://doi.org/10.1186/s13015-015-0032-x.
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  • 2014 | Journal Article
    ​ ​Leimeister, Chris-Andre, and Burkhard Morgenstern. "kmacs: the k-mismatch average common substring approach to alignment-free sequence comparison​." ​Bioinformatics ​30, no. 14 (2014): ​2000​-2008​. ​https://doi.org/10.1093/bioinformatics/btu331.
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  • 2014 | Journal Article | 
    ​ ​Horwege, Sebastian, Sebastian Lindner, Marcus Boden, Klas Hatje, Martin Kollmar, Chris-Andre Leimeister, and Burkhard Morgenstern. "Spaced words and kmacs: fast alignment-free sequence comparison based on inexact word matches​." ​Nucleic Acids Research ​42, no. W1 (2014): ​W7​-W11​. ​https://doi.org/10.1093/nar/gku398.
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  • 2014 | Journal Article | 
    ​ ​Kaever, Alexander, Manuel Landesfeind, Kirstin Feussner, Burkhard Morgenstern, Ivo Feussner, and Peter Meinicke. "Meta-Analysis of Pathway Enrichment: Combining Independent and Dependent Omics Data Sets​." ​PLoS ONE ​9, no. 2 (2014): ​e89297​. ​https://doi.org/10.1371/journal.pone.0089297.
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  • 2014 | Journal Article | 
    ​ ​Leimeister, Chris-Andre, Marcus Boden, Sebastian Horwege, Sebastian Lindner, and Burkhard Morgenstern. "Fast alignment-free sequence comparison using spaced-word frequencies​." ​Bioinformatics ​30, no. 14 (2014): ​1991​-1999​. ​https://doi.org/10.1093/bioinformatics/btu177.
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  • 2013 | Conference Proceedings
    ​ ​Beißbarth, Tim, Martin Kollmar, Andreas Leha, Burkhard Morgenstern, Anne-Kathrin Schultz, Stephan Waack, and Edgar Wingender​, eds. German Conference on Bioinformatics 2013​. ​​2013. 
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  • 2013 | Journal Article | 
    ​ ​Al Ait, Layal, Zaher Yamak, and Burkhard Morgenstern. "DIALIGN at GOBICS-multiple sequence alignment using various sources of external information​." ​Nucleic Acids Research ​41, no. W1 (2013): ​W3​-W7​. ​https://doi.org/10.1093/nar/gkt283.
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  • 2012 | Journal Article | 
    ​ ​Schultz, Anne-Kathrin, Ingo Bulla, Mariama Abdou-Chekaraou, Emmanuel Gordien, Burkhard Morgenstern, Fabien Zoulim, Paul Deny, and Mario Stanke. "jpHMM: recombination analysis in viruses with circular genomes such as the hepatitis B virus​." ​Nucleic Acids Research ​40, no. W1 (2012): ​W193​-W198​. ​https://doi.org/10.1093/nar/gks414.
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  • 2011 | Journal Article
    ​ ​Rachfall, Nicole, Isabelle Heinemeyer, Burkhard Morgenstern, Oliver Valerius, and Gerhard H. Braus. "5 ' TRU: Identification and Analysis of Translationally Regulative 5 ' Untranslated Regions in Amino Acid Starved Yeast Cells​." ​Molecular & Cellular Proteomics ​10, no. 6 (2011): . ​https://doi.org/10.1074/mcp.M110.003350.
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  • 2011 | Journal Article | 
    ​ ​Unterthiner, Thomas, Anne-Kathrin Schultz, Jan Bulla, Burkhard Morgenstern, Mario Stanke, and Ingo Bulla. "Detection of viral sequence fragments of HIV-1 subfamilies yet unknown​." ​BMC Bioinformatics ​12 (2011): ​93​. ​https://doi.org/10.1186/1471-2105-12-93.
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  • 2011 | Journal Article
    ​ ​Lingner, Thomas, Amr R. Kataya, Gerardo E. Antonicelli, Aline Benichou, Kjersti Nilssen, Xiong-Yan Chen, Tanja Siemsen, Burkhard Morgenstern, Peter Meinicke, and Sigrun Reumann. "Identification of Novel Plant Peroxisomal Targeting Signals by a Combination of Machine Learning Methods and in Vivo Subcellular Targeting Analyses​." ​The Plant Cell ​23, no. 4 (2011): ​1556​-1572​. ​https://doi.org/10.1105/tpc.111.084095.
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  • 2011 | Journal Article | 
    ​ ​Truong, Cong V. C., Linn F. Groeneveld, Burkhard Morgenstern, and Eildert Groeneveld. "MolabIS - An integrated information system for storing and managing molecular genetics data​." ​BMC Bioinformatics ​12 (2011): ​425​. ​https://doi.org/10.1186/1471-2105-12-425.
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  • 2010 | Journal Article
    ​ ​Schultz, Anne-Kathrin, Ming Zhang, Ingo Bulla, Thomas Leitner, Bette Korber, Burkhard Morgenstern, and Mario Stanke. "jpHMM: improving the reliability of recombination prediction in HIV-1​." ​Nucleic Acids Research ​38, no. 3 (2010): ​1059​-1059​. ​https://doi.org/10.1093/nar/gkq015.
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  • 2010 | Journal Article | 
    ​ ​Zhang, Ming, Brian Foley, Anne-Kathrin Schultz, Jennifer P. Macke, Ingo Bulla, Mario Stanke, Burkhard Morgenstern, Bette Korber, and Thomas Leitner. "The role of recombination in the emergence of a complex and dynamic HIV epidemic​." ​Retrovirology ​7, no. 25 (2010): -15​. ​https://doi.org/10.1186/1742-4690-7-25.
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  • 2010 | Journal Article
    ​ ​Bulla, Ingo, Anne-Kathrin Schultz, Fabian Schreiber, M. Zhang, Thomas Leitner, Bette Korber, Burkhard Morgenstern, and Mario Stanke. "HIV classification using the coalescent theory​." ​Bioinformatics ​26, no. 11 (2010): ​1409​-1415​. ​https://doi.org/10.1093/bioinformatics/btq159.
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  • 2010 | Journal Article
    ​ ​Corel, Eduardo, Florian Pitschi, and Burkhard Morgenstern. "A min-cut algorithm for the consistency problem in multiple sequence alignment​." ​Bioinformatics ​26, no. 8 (2010): ​1015​-1021​. ​https://doi.org/10.1093/bioinformatics/btq082.
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  • 2010 | Journal Article | 
    ​ ​Subramanian, Amarendran R., Suvrat Hiran, Rasmus Steinkamp, Peter Meinicke, Eduardo Corel, and Burkhard Morgenstern. "DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS​." ​Nucleic Acids Research ​38 (2010): ​W19​-W22​. ​https://doi.org/10.1093/nar/gkq442.
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  • 2010 | Journal Article
    ​ ​Pick, Kerstin, Herve Philippe, F. Schreiber, D. Erpenbeck, Daniel John Jackson, P. Wrede, M. Wiens et al. "Improved Phylogenomic Taxon Sampling Noticeably Affects Nonbilaterian Relationships​." ​Molecular Biology and Evolution ​27, no. 9 (2010): ​1983​-1987​. ​https://doi.org/10.1093/molbev/msq089.
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  • 2009 | Journal Article | Research Paper
    ​ ​Sommerfeld, Dietmar, Thomas Lingner, Mario Stanke, Burkhard Morgenstern, and Harald Richter. "AUGUSTUS at MediGRID: Adaption of a bioinformatics application to grid computing for efficient genome analysis​." ​Future Generation Computer Systems ​25, no. 3 (2009): ​337​-345​. ​https://doi.org/10.1016/j.future.2008.05.010.
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  • 2009 | Conference Abstract
    ​ ​Goebel, C., Kristin Feussner, Alexander Kaever, Peter Meinicke, Burkhard Morgenstern, and Ivo Feussner. "Identification of metabolic changes after wounding in Arabidopsis thaliana by an unbiased UPLC-MS approach​." ​Chemistry and Physics of Lipids ​160​ ​(2009): https://doi.org/10.1016/j.chemphyslip.2009.06.024.
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  • 2009 | Journal Article | 
    ​ ​Schreiber, Fabian, Kerstin Pick, Dirk Erpenbeck, Gert Woerheide, and Burkhard Morgenstern. "OrthoSelect: a protocol for selecting orthologous groups in phylogenomics​." ​BMC Bioinformatics ​10 (2009): ​219​. ​https://doi.org/10.1186/1471-2105-10-219.
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  • 2009 | Journal Article
    ​ ​Schreiber, Fabian, Gert Woerheide, and Burkhard Morgenstern. "OrthoSelect: a web server for selecting orthologous gene alignments from EST sequences​." ​Nucleic Acids Research ​37 (2009): ​W185​-W188​. ​https://doi.org/10.1093/nar/gkp434.
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  • 2009 | Journal Article
    ​ ​Schultz, Anne-Kathrin, M. Zhang, Ingo Bulla, Thomas Leitner, Bette Korber, Burkhard Morgenstern, and Mario Stanke. "jpHMM: Improving the reliability of recombination prediction in HIV-1​." ​Nucleic Acids Research ​37 (2009): ​W647​-W651​. ​https://doi.org/10.1093/nar/gkp371.
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  • 2009 | Journal Article
    ​ ​Philippe, Herve, Romain Derelle, Philippe Lopez, Kerstin Pick, Carole Borchiellini, Nicole Boury-Esnault, Jean Vacelet et al. "Phylogenomics Revives Traditional Views on Deep Animal Relationships​." ​Current Biology ​19, no. 8 (2009): ​706​-712​. ​https://doi.org/10.1016/j.cub.2009.02.052.
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  • 2009 | Journal Article
    ​ ​Schmeisser, Christel, Heiko Liesegang, Dagmar Krysciak, Nadia Bakkou, Antoine Le Quere, Antje Wollherr, Isabelle Heinemeyer et al. "Rhizobium sp Strain NGR234 Possesses a Remarkable Number of Secretion Systems​." ​Applied and Environmental Microbiology ​75, no. 12 (2009): ​4035​-4045​. ​https://doi.org/10.1128/AEM.00515-09.
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  • 2008 | Journal Article | 
    ​ ​Subramanian, Amarendran R., Michael Kaufmann, and Burkhard Morgenstern. "DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment​." ​Algorithms for molecular biology ​3, no. 6 (2008): ​1​-11​. ​
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  • 2008 | Journal Article | 
    ​ ​Weiberg, Arne, Dirk Poehler, Burkhard Morgenstern, and Petr Karlovsky. "Improved coverage of cDNA-AFLP by sequential digestion of immobilized cDNA​." ​BMC Genomics ​9 (2008): ​480​. ​https://doi.org/10.1186/1471-2164-9-480.
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  • 2008 | Journal Article | 
    ​ ​Meinicke, Peter, Thomas Lingner, Alexander Kaever, Kirstin Feussner, Cornelia Goebel, Ivo Feussner, Petr Karlovsky, and Burkhard Morgenstern. "Metabolite-based clustering and visualization of mass spectrometry data using one-dimensional self-organizing maps​." ​Algorithms for Molecular Biology ​3 (2008): ​9​. ​https://doi.org/10.1186/1748-7188-3-9.
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  • 2008 | Journal Article | 
    ​ ​Wagner, Holger, Burkhard Morgenstern, and Andreas Dress. "Stability of multiple alignments and phylogenetic trees: an analysis of ABC-transporter proteins family​." ​Algorithms for Molecular Biology ​3 (2008): ​15​. ​https://doi.org/10.1186/1748-7188-3-15.
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  • 2008 | Journal Article | 
    ​ ​Hoff, Katharina J., Maike Tech, Thomas Lingner, Rolf Daniel, Burkhard Morgenstern, and Peter Meinicke. "Gene prediction in metagenomic fragments: A large scale machine learning approach​." ​BMC Bioinformatics ​9 (2008): ​217​. ​https://doi.org/10.1186/1471-2105-9-217.
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  • 2007 | Journal Article | 
    ​ ​Chen, Xiao Hua, Alexandra Koumoutsi, Romy Scholz, Andreas Eisenreich, Kathrin Schneider, Isabelle Heinemeyer, Burkhard Morgenstern et al. "Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42​." ​Nature Biotechnology ​25, no. 9 (2007): ​1007​-1014​. ​https://doi.org/10.1038/nbt1325.
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  • 2006 | Journal Article | 
    ​ ​Stanke, Mario, Ana Tzvetkova, and Burkhard Morgenstern. "AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome​." ​Genome Biology ​7 (2006): ​S11​. ​https://doi.org/10.1186/gb-2006-7-s1-s11.
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  • 2006 | Journal Article | 
    ​ ​Stanke, Mario, Oliver Keller, Irfan Gunduz, Alec Hayes, Stephan Waack, and Burkhard Morgenstern. "AUGUSTUS: ab initio prediction of alternative transcripts​." ​NUCLEIC ACIDS RESEARCH ​34 (2006): ​W435​-W439​. ​https://doi.org/10.1093/nar/gkl200.
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  • 2006 | Journal Article | 
    ​ ​Zhang, Ming, Anne-Kathrin Schultz, Charles Calef, Carla Kuiken, Thomas Leitner, Bette Korber, Burkhard Morgenstern, and Mario Stanke. "jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1​." ​NUCLEIC ACIDS RESEARCH ​34 (2006): ​W463​-W465​. ​https://doi.org/10.1093/nar/gkl255.
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  • 2006 | Journal Article | 
    ​ ​Morgenstern, Burkhard, Sonja J. Prohaska, Dirk Poehler, and Peter F. Stadler. "Multiple sequence alignment with user-defined anchor points​." ​Algorithms for Molecular Biology ​1 (2006): ​6​. ​https://doi.org/10.1186/1748-7188-1-6.
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  • 2006 | Journal Article | 
    ​ ​Schultz, Anne-Kathrin, M. Zhang, Thomas Leitner, Carla Kuiken, Bette Korber, Burkhard Morgenstern, and Mario Stanke. "A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes​." ​BMC Bioinformatics ​7 (2006): ​265​. ​https://doi.org/10.1186/1471-2105-7-265.
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  • 2006 | Journal Article | 
    ​ ​Stanke, Mario, O. Schoffmann, Burkhard Morgenstern, and S. Waack. "Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources​." ​BMC Bioinformatics ​7 (2006): ​62​. ​https://doi.org/10.1186/1471-2105-7-62.
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  • 2006 | Journal Article | 
    ​ ​Tech, Maike, Burkhard Morgenstern, and Peter Meinicke. "TICO: a tool for postprocessing the predictions of prokaryotic translation initiation sites​." ​Nucleic Acids Research ​34 (2006): ​W588​-W590​. ​https://doi.org/10.1093/nar/gkl313.
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  • 2006 | Journal Article | Letter Note | 
    ​ ​Morgenstern, Burkhard, and Peter F. Stadler. "New journal: Algorithms for molecular biology​." ​Algorithms for Molecular Biology ​1 (2006): ​1​. ​https://doi.org/10.1186/1748-7188-1-1.
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  • 2005 | Journal Article
    ​ ​Tech, Maike, N. Pfeifer, Burkhard Morgenstern, and Peter Meinicke. "TICO: a tool for improving predictions of prokaryotic translation initiation sites​." ​Bioinformatics ​21, no. 17 (2005): ​3568​-3569​. ​https://doi.org/10.1093/bioinformatics/bti563.
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  • 2005 | Journal Article | 
    ​ ​Pohler, D., N. Werner, R. Steinkamp, and Burkhard Morgenstern. "Multiple alignment of genomic sequences using CHAOS, DIALIGN and ABC​." ​Nucleic Acids Research ​33 (2005): ​W532​-W534​. ​https://doi.org/10.1093/nar/gki386.
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  • 2005 | Journal Article | 
    ​ ​Stanke, Mario, and Burkhard Morgenstern. "AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints​." ​Nucleic Acids Research ​33 (2005): ​W465​-W467​. ​https://doi.org/10.1093/nar/gki458.
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  • 2005 | Journal Article | 
    ​ ​Subramanian, A. R., J. Weyer-Menkhoff, M. Kaufmann, and Burkhard Morgenstern. "DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment​." ​BMC Bioinformatics ​6 (2005): ​66​. ​https://doi.org/10.1186/1471-2105-6-66.
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  • 2005 | Journal Article
    ​ ​Morgenstern, Burkhard, N. Werner, Sonja J. Prohaska, R. Steinkamp, I. Schneider, A. R. Subramanian, Peter F. Stadler, and J. Weyer-Menkhoff. "Multiple sequence alignment with user-defined constraints at GOBICS​." ​Bioinformatics ​21, no. 7 (2005): ​1271​-1273​. ​https://doi.org/10.1093/bioinformatics/bti142.
    ​Details  DOI  PMID  PMC  WoS 
  • 2004 | Conference Abstract
    ​ ​Morgenstern, Burkhard. "The DIALIGN multiple alignment program: Recent developments and applications​." ​CLADISTICS-THE INTERNATIONAL JOURNAL OF THE WILLI HENNIG SOCIETY ​20​, ​no. 1 (2004): ​89​-90. 
    ​Details  WoS 
  • 2004 | Journal Article | 
    ​ ​Meinicke, Peter, Maike Tech, Burkhard Morgenstern, and R. Merkl. "Oligo kernels for datamining on biological sequences: a case study on prokaryotic translation initiation sites​." ​BMC Bioinformatics ​5 (2004): ​169​. ​https://doi.org/10.1186/1471-2105-5-169.
    ​Details  DOI  PMID  PMC  WoS 
  • 2004 | Journal Article | 
    ​ ​Brudno, M., R. Steinkamp, and Burkhard Morgenstern. "The CHAOS/DIALIGN WWW server for multiple alignment of genomic sequences​." ​Nucleic Acids Research ​32 (2004): ​W41​-W44​. ​https://doi.org/10.1093/nar/gkh361.
    ​Details  DOI  PMID  PMC  WoS 
  • 2004 | Journal Article | 
    ​ ​Morgenstern, Burkhard. "DIALIGN: multiple DNA and protein sequence alignment at BiBiServ​." ​Nucleic Acids Research ​32 (2004): ​W33​-W36​. ​https://doi.org/10.1093/nar/gkh373.
    ​Details  DOI  PMID  PMC  WoS 
  • 2004 | Journal Article | 
    ​ ​Schmollinger, M., K. Nieselt, M. Kaufmann, and Burkhard Morgenstern. "DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors​." ​BMC Bioinformatics ​5 (2004): ​128​. ​https://doi.org/10.1186/1471-2105-5-128.
    ​Details  DOI  PMID  PMC  WoS 
  • 2004 | Journal Article | 
    ​ ​Stanke, Mario, R. Steinkamp, S. Waack, and Burkhard Morgenstern. "AUGUSTUS: a web server for gene finding in eukaryotes​." ​Nucleic Acids Research ​32 (2004): ​W309​-W312​. ​https://doi.org/10.1093/nar/gkh379.
    ​Details  DOI  PMID  PMC  WoS 
  • 2004 | Journal Article | 
    ​ ​Taher, L., O. Rinner, S. Garg, A. Sczyrba, and Burkhard Morgenstern. "AGenDA: gene prediction by cross-species sequence comparison​." ​Nucleic Acids Research ​32 (2004): ​W305​-W308​. ​https://doi.org/10.1093/nar/gkh386.
    ​Details  DOI  PMID  PMC  WoS 
  • 2003 | Journal Article
    ​ ​Morgenstern, B., S. Goel, A. Sczyrba, and A. Dress. "AltAVisT: Comparing alternative multiple sequence alignments​." ​Bioinformatics ​19, no. 3 (2003): ​425​-426​. ​https://doi.org/10.1093/bioinformatics/btf882.
    ​Details  DOI 
  • 2003 | Journal Article
    ​ ​Taher, L., O. Rinner, S. Garg, A. Sczyrba, M. Brudno, S. Batzoglou, and Burkhard Morgenstern. "AGenDA: homology-based gene prediction​." ​Bioinformatics ​19, no. 12 (2003): ​1575​-1577​. ​https://doi.org/10.1093/bioinformatics/btg181.
    ​Details  DOI  PMID  PMC  WoS 
  • 2003 | Journal Article | 
    ​ ​Brudno, M., Mark A. Chapman, B. Gottgens, S. Batzoglou, and Burkhard Morgenstern. "Fast and sensitive multiple alignment of large genomic sequences​." ​BMC Bioinformatics ​4 (2003): ​66​. ​https://doi.org/10.1186/1471-2105-4-66.
    ​Details  DOI  PMID  PMC  WoS 
  • 2003 | Journal Article
    ​ ​Sammeth, Michael, Burkhard Morgenstern, and Jens Stoye. "Divide-and-conquer multiple alignment with segment-based constraints​." ​Bioinformatics ​19 (2003): ​II189​-II195​. ​https://doi.org/10.1093/bioinformatics/btg1077.
    ​Details  DOI  PMID  PMC  WoS 
  • 2002 | Journal Article
    ​ ​Morgenstern, B., O. Rinner, S. Abdeddaim, D. Haase, K. F. X. Mayer, A. W. M. Dress, and H.-W. Mewes. "Exon discovery by genomic sequence alignment​." ​Bioinformatics ​18, no. 6 (2002): ​777​-787​. ​https://doi.org/10.1093/bioinformatics/18.6.777.
    ​Details  DOI 
  • 2002 | Journal Article
    ​ ​Morgenstern, B.. "A simple and space-efficient fragment-chaining algorithm for alignment of DNA and protein sequences​." ​Applied Mathematics Letters ​15, no. 1 (2002): ​11​-16​. ​https://doi.org/10.1016/S0893-9659(01)00085-4.
    ​Details  DOI 
  • 2002 | Journal Article | 
    ​ ​Mewes, H. W., D. Frishman, U. Güldener, G. Mannhaupt, K. Mayer, M. Mokrejs, B. Morgenstern, M. Münsterkötter, S. Rudd, and B. Weil. "MIPS: a database for genomes and protein sequences.​." ​NUCLEIC ACIDS RESEARCH ​30, no. 1 (2002): ​31​-34​. ​
    ​Details 
  • 2001 | Journal Article
    ​ ​Geier, B., G. Kastenmuller, M. Fellenberg, H.-W. Mewes, and B. Morgenstern. "The HIB database of annotated UniGene clusters​." ​Bioinformatics ​17, no. 6 (2001): ​571​-572​. ​https://doi.org/10.1093/bioinformatics/17.6.571.
    ​Details  DOI 
  • 2000 | Journal Article
    ​ ​Morgenstern, B.. "A space-efficient algorithm for aligning large genomic sequences​." ​Bioinformatics ​16, no. 10 (2000): ​948​-949​. ​https://doi.org/10.1093/bioinformatics/16.10.948.
    ​Details  DOI 
  • 1999 | Journal Article
    ​ ​Lenhof, H., B. Morgenstern, and K Reinert. "An exact solution for the segment-to-segment multiple sequence alignment problem​." ​Bioinformatics ​15, no. 3 (1999): ​203​-210​. ​https://doi.org/10.1093/bioinformatics/15.3.203.
    ​Details  DOI 
  • 1999 | Journal Article
    ​ ​Morgenstern, B., and W. R. Atchley. "Evolution of bHLH transcription factors: modular evolution by domain shuffling?​." ​Molecular Biology and Evolution ​16, no. 12 (1999): ​1654​-1663​. ​https://doi.org/10.1093/oxfordjournals.molbev.a026079.
    ​Details  DOI 
  • 1999 | Journal Article
    ​ ​Morgenstern, B.. "DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment​." ​Bioinformatics ​15, no. 3 (1999): ​211​-218​. ​https://doi.org/10.1093/bioinformatics/15.3.211.
    ​Details  DOI 
  • 1998 | Journal Article
    ​ ​Dress, A., B. Morgenstern, and J. Stoye. "The number of standard and of effective multiple alignments​." ​Applied Mathematics Letters ​11, no. 4 (1998): ​43​-49​. ​https://doi.org/10.1016/S0893-9659(98)00054-8.
    ​Details  DOI 
  • 1998 | Journal Article
    ​ ​Morgenstern, B., K. Frech, A. Dress, and T. Werner. "DIALIGN: finding local similarities by multiple sequence alignment​." ​Bioinformatics ​14, no. 3 (1998): ​290​-294​. ​https://doi.org/10.1093/bioinformatics/14.3.290.
    ​Details  DOI 
  • 1996 | Journal Article
    ​ ​Morgenstern, B., A Dress, and T Werner. "Multiple DNA and protein sequence alignment based on segment-to-segment comparison.​." ​Proceedings of the National Academy of Sciences ​93, no. 22 (1996): ​12098​-12103​. ​https://doi.org/10.1073/pnas.93.22.12098.
    ​Details  DOI 

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