SFB 1286: Quantitative Synaptologie RSS Feed

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SFB 1286

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Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE)
Max-Planck-Institut für Experimentelle Medizin
Max-Planck-Institut für Biophysikalische Chemie
Max-Planck-Institut für Dynamik und Selbstorganisation
Georg-August-Universität Göttingen
Universitätsmedizin Göttingen
Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE)
Max-Planck-Institut für Experimentelle Medizin
Max-Planck-Institut für Biophysikalische Chemie
Max-Planck-Institut für Dynamik und Selbstorganisation
Georg-August-Universität Göttingen
eResearch Alliance Göttingen

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2024 | Journal Article
Comprehensive transcriptome analysis reveals altered mRNA splicing and post-transcriptional changes in the aged mouse brain
Kumar, N. H.; Kluever, V.; Barth, E.; Krautwurst, S.; Furlan, M.; Pelizzola, M. & Marz, M. et al. (2024)
Nucleic Acids Research,. DOI: https://doi.org/10.1093/nar/gkae172
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2024 | Preprint
Near-optimal information relay by the neuronal population of layer 4 barrel cortex
Revah, O.; Wolf, F.; Gutnick, M. J.& Neef, A. (2024). DOI: https://doi.org/10.1101/2024.02.15.580451
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2024 | Journal Article
Vesicle condensation induced by synapsin: condensate size, geometry, and vesicle shape deformations
Alfken, J.; Neuhaus, C.; Major, A.; Taskina, A.; Hoffmann, C.; Ganzella, M. & Petrovic, A. et al. (2024)
The European Physical Journal. E, Soft Matter, 47(1) pp. 8. DOI: https://doi.org/10.1140/epje/s10189-023-00404-5
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2024 | Journal Article
Substitution of Met-38 to Ile in γ-synuclein found in two patients with amyotrophic lateral sclerosis induces aggregation into amyloid
Aubrey, L. D.; Ninkina, N.; Ulamec, S. M.; Abramycheva, N. Y.; Vasili, E.; Devine, O. M. & Wilkinson, M. et al. (2024)
Proceedings of the National Academy of Sciences of the United States of America, 121(2) art. e2309700120. DOI: https://doi.org/10.1073/pnas.2309700120
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2024 | Journal Article | Overview
Advancing cell biology with nanoscale fluorescence imaging: essential practical considerations
DʼEste, E.; Lukinavičius, G.; Lincoln, R.; Opazo, F. & Fornasiero, E. F. (2024)
Trends in Cell Biology,. DOI: https://doi.org/10.1016/j.tcb.2023.12.001
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2024 | Journal Article
Excess phosphoserine-129 α-synuclein induces synaptic vesicle trafficking and declustering defects at a vertebrate synapse
Wallace, J. N.; Crockford, Z. C.; Román-Vendrell, C.; Brady, E. B.; Hoffmann, C.; Vargas, K. J. & Potcoava, M. et al. (2024)
Molecular Biology of the Cell, 35(1) art. ar10. DOI: https://doi.org/10.1091/mbc.E23-07-0269
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2024 | Journal Article
Developmental changes of the mitochondria in the murine anteroventral cochlear nucleus
Hintze, A.; Lange, F.; Steyer, A. M.; Anstatt, J.; Möbius, W.; Jakobs, S. & Wichmann, C. (2024)
iScience, 27(1) art. 108700. DOI: https://doi.org/10.1016/j.isci.2023.108700
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2024 | Journal Article
H3 Acetylation-Induced Basal Progenitor Generation and Neocortex Expansion Depends on the Transcription Factor Pax6
Sokpor, G.; Kerimoglu, C.; Ulmke, P. A.; Pham, L.; Nguyen, H. D.; Brand-Saberi, B. & Staiger, J. F. et al. (2024)
Biology, 13(2) pp. 68. DOI: https://doi.org/10.3390/biology13020068
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2024 | Journal Article
Dynamic gain decomposition reveals functional effects of dendrites, ion channels and input statistics in population coding
Zhang, C.; Revah, O.; Wolf, F. & Neef, A. (2024)
The Journal of Neuroscience, art. e0799232023. DOI: https://doi.org/10.1523/JNEUROSCI.0799-23.2023
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2024 | Journal Article
Inhibition of 26S proteasome activity by α‐synuclein is mediated by the proteasomal chaperone Rpn14/ PAAF1
Galka, D.; Ali, T. T.; Bast, A.; Niederleithinger, M.; Gerhardt, E.; Motosugi, R. & Sakata, E. et al. (2024)
Aging Cell, art. e14128. DOI: https://doi.org/10.1111/acel.14128
Details DOI arXiv

2024 | Journal Article
Subcellular protein turnover in human neural progenitor cells revealed by correlative electron microscopy and nanoscale secondary ion mass spectrometry imaging
Lork, A. A.; Rabasco, S.; Ernst, C.; du Toit, A.; Rizzoli, S. O. & Phan, N. T. N. (2024)
Chemical Science, 15(9) pp. 3311-3322. DOI: https://doi.org/10.1039/D3SC05629E
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2024 | Preprint
NanoPlex: a universal strategy for fluorescence microscopy multiplexing using nanobodies with erasable signals
Mougios, N.; Cotroneo, E. R.; Imse, N.; Setzke, J.; Rizzoli, S.; Simeth, N. A.& Tsukanov, R. et al. (2024). DOI: https://doi.org/10.1101/2024.03.18.585511
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2024 | Preprint
Synphilin-1 as a modulator of aSyn assembly
Lázaro, D. F.; Amen, T.; Gerhardt, E.; Santos, P. I.; Milovanovic, D.; Höglinger, G.& Outeiro, T. F. (2024). DOI: https://doi.org/10.1101/2024.03.05.583522
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2024 | Journal Article
A Single-Cell Transcriptomic Analysis of the Mouse Hippocampus After Voluntary Exercise
Methi, A.; Islam, M. R.; Kaurani, L.; Sakib, M S.; Krüger, D. M.; Pena, T. & Burkhardt, S. et al. (2024)
Molecular Neurobiology,. DOI: https://doi.org/10.1007/s12035-023-03869-9
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2023 | Preprint
Prediction mismatch responses arise as corrections of a predictive spiking code
van Driel, K.; Rudelt, L.; Priesemann, V.& Mikulasch, F. A. (2023). DOI: https://doi.org/10.1101/2023.11.16.567335
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2023 | Journal Article |
The alpha-synuclein oligomers activate nuclear factor of activated T-cell (NFAT) modulating synaptic homeostasis and apoptosis
Sant’Anna, R.; Robbs, B. K.; de Freitas, J. A.; dos Santos, P. P.; König, A.; Outeiro, T. F. & Foguel, D. (2023)
Molecular Medicine, 29(1) art. 111. DOI: https://doi.org/10.1186/s10020-023-00704-8
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2023 | Journal Article |
Chemical Synthesis of Alpha‐Synuclein Proteins via Solid‐Phase Peptide Synthesis and Native Chemical Ligation
Gatzemeier, L. M.; Meyer, F.; Diederichsen, U. & Outeiro, T. F. (2023)
Chemistry: a European Journal, 29(33) art. e202300649. DOI: https://doi.org/10.1002/chem.202300649
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2023 | Journal Article
Characterizing the differential distribution and targets of Sumo1 and Sumo2 in the mouse brain
Suk, T. R.; Nguyen, T. T.; Fisk, Z. A.; Mitkovski, M.; Geertsma, H. M.; Parmasad, J. Parmasad, Jean-Louis A. & Heer, M. M. et al. (2023)
iScience, 26(4) art. 106350. DOI: https://doi.org/10.1016/j.isci.2023.106350
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2023 | Journal Article |
Expansion-enhanced super-resolution radial fluctuations enable nanoscale molecular profiling of pathology specimens
Kylies, D.; Zimmermann, M.; Haas, F.; Schwerk, M.; Kuehl, M.; Brehler, M. & Czogalla, J. et al. (2023)
Nature Nanotechnology,. DOI: https://doi.org/10.1038/s41565-023-01328-z
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2023 | Preprint
Reverse-time analysis uncovers universality classes in directional biological dynamics
Lenner, N.; Eule, S.; Großhans, J.& Wolf, F. (2023). DOI: https://doi.org/10.48550/ARXIV.2304.03226
Details DOI arXiv

2023 | Journal Article
Trafficking proteins show limited differences in mobility across different postsynaptic spines
Mougios, N.; Opazo, F. ; Rizzoli, S. O. & Reshetniak, S. (2023)
iScience, 26(2) art. 105971. DOI: https://doi.org/10.1016/j.isci.2023.105971
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2023 | Conference Abstract
Coherent diffractive imaging of lipid vesicles and synaptic vesicles by femtosecond x-ray FEL pulses
Neuhaus, C.; Alfken, J.; Komorowski, K.; Stammer, M. L.; Bean, R.; Bielecki, J. & de Wijn, R. et al. (2023)
Biophysical Journal, 122(3) p. 322a. 67th Biophysical Society Annual Meeting, San Diego. DOI: https://doi.org/10.1016/j.bpj.2022.11.1803
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2023 | Journal Article
Neuronal extracellular vesicles and associated microRNAs induce circuit connectivity downstream BDNF
Antoniou, A.; Auderset, L.; Kaurani, L.; Sebastian, E.; Zeng, Y.; Allahham, M. & Cases-Cunillera, S. et al. (2023)
Cell Reports, 42(2) art. 112063. DOI: https://doi.org/10.1016/j.celrep.2023.112063
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2023 | Journal Article | Overview
Condensate biology of synaptic vesicle clusters
Sansevrino, R.; Hoffmann, C. & Milovanovic, D. (2023)
Trends in Neurosciences,. DOI: https://doi.org/10.1016/j.tins.2023.01.001
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2023 | Preprint
Deep learning enables fast, gentle STED microscopy
Ebrahimi, V.; Stephan, T.; Kim, J.; Carravilla, P.; Eggeling, C.; Jakobs, S. & Han, K. Y. (2023). DOI: https://doi.org/10.1101/2023.01.26.525571
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2023 | Journal Article | Overview
Where is the error? Hierarchical predictive coding through dendritic error computation
Mikulasch, F. A.; Rudelt, L.; Wibral, M. & Priesemann, V. (2023)
Trends in Neurosciences, 46(1) pp. 45-59. DOI: https://doi.org/10.1016/j.tins.2022.09.007
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2023 | Preprint
A novel miR-99b-5p-Zbp1 pathway in microglia contributes to the pathogenesis of schizophrenia
Kaurani, L.; Islam, M. R.; Heilbronner, U.; Krüger, D. M.; Zhou, J.; Methi, A.& Strauss, J. et al. (2023). DOI: https://doi.org/10.1101/2023.03.21.533602
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2023 | Preprint
Towards a Biological Definition of Parkinson’s Disease
Höglinger, G. U.; Adler, C. H.; Berg, D.; Klein, C.; Outeiro, T. F. ; Poewe, W.& Postuma, R. et al. (2023). DOI: https://doi.org/10.20944/preprints202304.0108.v1
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2023 | Preprint
Alpha-synuclein oligomers activate NFAT proteins modulating synaptic homeostasis and apoptosis
Sant’Anna, R.; Robbs, B. K; de Freitas, J. A.; dos Santos, P. P.; König, A.; Outeiro, T. F. & Foguel, D. (2023). DOI: https://doi.org/10.1101/2023.02.21.529374
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2023 | Journal Article
Uncovering the molecular link between lead toxicity and Parkinson’s disease
Shvachiy, L.; Geraldes, V. & Outeiro, T. (2023)
Antioxidants & Redox Signaling, art. ars.2022.0076. DOI: https://doi.org/10.1089/ars.2022.0076
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2023 | Preprint
Impact of Phosphorylation on alpha-Synuclein Structural Determinants
Dorn, A. E.; de Bruyn, E.; Rossetti, G.; Fernandez, C.; Outeiro, T. F. ; Schulz, J. B.& Carloni, P. (2023). DOI: https://doi.org/10.1101/2023.03.10.531864
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2023 | Preprint
A versatile synaptotagmin-1 nanobody provides perturbation-free live synaptic imaging and low linkage-error in super-resolution microscopy
Villa Real, K. Q. Z.; Mougios, N.; Rehm, R.; Sograte-Idrissi, S.; Albert, L.; Rahimi, A. M.& Maidorn, M. et al. (2023). DOI: https://doi.org/10.1101/2023.01.30.525828
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2023 | Preprint
Age-dependent structural reorganization of utricular ribbon synapses
Michanski, S.; Henneck, T.; Mukhopadhyay, M.; Steyer, A. M.; Gonzalez, P. A.; Grewe, K.& Ilgen, P. et al. (2023). DOI: https://doi.org/10.1101/2022.12.19.521049
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2023 | Journal Article |
Intermittent Lead Exposure Induces Behavioral and Cardiovascular Alterations Associated with Neuroinflammation
Shvachiy, L.; Amaro-Leal, Â.; Outeiro, T. F. ; Rocha, I. & Geraldes, V. (2023)
Cells, 12(5) pp. 818. DOI: https://doi.org/10.3390/cells12050818
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2023 | Preprint
Reverse-time analysis and boundary classification of directional biological dynamics with multiplicative noise
Lenner, N.; Häring, M.; Eule, S.; Großhans, J.& Wolf, F. (2023). DOI: https://doi.org/10.48550/ARXIV.2304.04279
Details DOI arXiv

2023 | Journal Article | Overview
The multifaceted mitochondrial OXA insertase
Homberg, B.; Rehling, P. & Cruz-Zaragoza, L. D. (2023)
Trends in Cell Biology,. DOI: https://doi.org/10.1016/j.tcb.2023.02.001
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2023 | Journal Article |
Deep learning enables fast, gentle STED microscopy
Ebrahimi, V.; Stephan, T.; Kim, J.; Carravilla, P.; Eggeling, C.; Jakobs, S. & Han, K. Y. (2023)
Communications Biology, 6(1). DOI: https://doi.org/10.1038/s42003-023-05054-z
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2023 | Journal Article | Overview
AI and protein structure and function in neurological disease: relevance to disease management
Outeiro, T. F. & Vieira, T. C. R. G. (2023)
Nature Reviews Neurology, 19(8) pp. 453-454. DOI: https://doi.org/10.1038/s41582-023-00840-z
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2023 | Preprint
Boosting of neural circuit chaos at the onset of collective oscillations
Palmigiano, A.; Engelken, R.& Wolf, F. (2023). DOI: https://doi.org/10.1101/2022.08.28.505598
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2023 | Preprint
Tunable Synaptic Working Memory with Volatile Memristive Devices
Ricci, S.; Kappel, D.; Tetzlaff, C.; Ielmini, D.& Covi, E. (2023). DOI: https://doi.org/10.48550/ARXIV.2306.14691
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2023 | Journal Article | Overview
Aggregation and beyond: alpha-synuclein-based biomarkers in synucleinopathies
Chopra, A. & Outeiro, T. F. (2023)
Brain, art. awad260. DOI: https://doi.org/10.1093/brain/awad260
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2023 | Journal Article
FAT10 is phosphorylated by IKKβ to inhibit the antiviral type-I interferon response
Saxena, K.; Roverato, N. D.; Reithmann, M.; Mah, M. M.; Schregle, R.; Schmidtke, G. & Silbern, I. et al. (2023)
Life Science Alliance, 7(1) art. e202101282. DOI: https://doi.org/10.26508/lsa.202101282
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2023 | Journal Article
Increased alpha‐synuclein and neuroinflammation in the substantia nigra triggered by systemic inflammation are reversed by targeted inhibition of the receptor for advanced glycation end products ( RAGE )
Peixoto, D. O.; Bittencourt, R. R.; Gasparotto, J.; Kessler, F. G. C.; Brum, P. O.; Somensi, N. & Girardi, C. S. et al. (2023)
Journal of Neurochemistry, art. jnc.15956. DOI: https://doi.org/10.1111/jnc.15956
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2023 | Journal Article | Overview
PrP meets alpha‐synuclein: Molecular mechanisms and implications for disease
Vieira, T. C. R. G.; Barros, C. A.; Domingues, R. & Outeiro, T. F. (2023)
Journal of Neurochemistry, art. jnc.15992. DOI: https://doi.org/10.1111/jnc.15992
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2023 | Journal Article
Region-Specific Phosphorylation Determines Neuroligin-3 Localization to Excitatory versus Inhibitory Synapses
Altas, B.; Tuffy, L. P.; Patrizi, A.; Dimova, K.; Soykan, T.; Brandenburg, C. & Romanowski, A. J. et al. (2023)
Biological Psychiatry,. DOI: https://doi.org/10.1016/j.biopsych.2023.12.020
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2023 | Conference Paper
B36.00008: Membrane fusion as a pathway to fission
Spencer, R. K. & Müller, M. (2023)
APS March Meeting, Minneapolis.
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2023 | Journal Article
Fibroblast growth factor 9 (FGF9) mediated neurodegeneration: implications for progressive multiple sclerosis?
Thümmler, K.; Wrzos, C.; Franz, J.; McElroy, D.; Cole, J. J.; Hayden, L. & Arseni, D. et al. (2023)
Neuropathology and Applied Neurobiology, art. e12935. DOI: https://doi.org/10.1111/nan.12935
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2023 | Journal Article
Phosphatases modified by LH signaling in ovarian follicles: testing their role in regulating the NPR2 guanylyl cyclase
Egbert, J. R.; Silbern, I.; Uliasz, T. F.; Lowther, K. M.; Yee, S.-P.; Urlaub, H. & Jaffe, L. A. (2023)
Biology of Reproduction, art. ioad130. DOI: https://doi.org/10.1093/biolre/ioad130
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2023 | Journal Article
Proteomic analysis of the human hippocampus identifies neuronal pentraxin 1 ( NPTX1 ) as synapto‐axonal target in late‐stage Parkinson's disease
Warth Perez Arias, C. C.; Silbern, I.; Caldi Gomes, L.; Wartmann, H.; Dambeck, V.; Fanz, J. & Neuenroth, L. et al. (2023)
Journal of Neurochemistry, 166(5) pp. 862-874. DOI: https://doi.org/10.1111/jnc.15924
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2023 | Journal Article
Lipid vesicle pools studied by passive X-ray microrheology
Czajka, T.; Neuhaus, C.; Alfken, J.; Stammer, M.; Chushkin, Y.; Pontoni, D. & Hoffmann, C. et al. (2023)
The European Physical Journal E, 46(12). DOI: https://doi.org/10.1140/epje/s10189-023-00375-7
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2023 | Journal Article
Conserved reduction of m 6 A RNA modifications during aging and neurodegeneration is linked to changes in synaptic transcripts
Castro-Hernández, R.; Berulava, T.; Metelova, M.; Epple, R.; Peña Centeno, T.; Richter, J. & Kaurani, L. et al. (2023)
Proceedings of the National Academy of Sciences, 120(9) art. e2204933120. DOI: https://doi.org/10.1073/pnas.2204933120
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2023 | Journal Article |
Metabolic switch from fatty acid oxidation to glycolysis in knock‐in mouse model of Barth syndrome
Chowdhury, A.; Boshnakovska, A.; Aich, A.; Methi, A.; Vergel Leon, A. M.; Silbern, I. & Lüchtenborg, C. et al. (2023)
EMBO Molecular Medicine, art. e17399. DOI: https://doi.org/10.15252/emmm.202317399
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2023 | Journal Article
A Versatile Synaptotagmin‐1 Nanobody Provides Perturbation‐Free Live Synaptic Imaging And Low Linkage‐Error in Super‐Resolution Microscopy
Queiroz Zetune Villa Real, K.; Mougios, N.; Rehm, R.; Sograte‐Idrissi, S.; Albert, L.; Rahimi, A. M. & Maidorn, M. et al. (2023)
Small Methods, art. 2300218. DOI: https://doi.org/10.1002/smtd.202300218
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2023 | Journal Article
High-resolution analysis of bound Ca 2+ in neurons and synapses
Bonnin, E. A.; Golmohammadi, A.; Rehm, R.; Tetzlaff, C. & Rizzoli, S. O. (2023)
Life Science Alliance, 7(1) art. e202302030. DOI: https://doi.org/10.26508/lsa.202302030
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2023 | Journal Article
Synapsin condensation controls synaptic vesicle sequestering and dynamics
Hoffmann, C.; Rentsch, J.; Tsunoyama, T. A.; Chhabra, A.; Aguilar Perez, G.; Chowdhury, R. & Trnka, F. et al. (2023)
Nature Communications, 14(1). DOI: https://doi.org/10.1038/s41467-023-42372-6
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2023 | Journal Article
ATG9 resides on a unique population of small vesicles in presynaptic nerve terminals
Binotti, B.; Ninov, M.; Cepeda, A. P.; Ganzella, M.; Matti, U.; Riedel, D. & Urlaub, H. et al. (2023)
Autophagy, art. 15548627.2023.2274204. DOI: https://doi.org/10.1080/15548627.2023.2274204
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2023 | Journal Article
Polychaetoid/ZO-1 strengthens cell junctions under tension while localizing differently than core adherens junction proteins
Schmidt, A.; Finegan, T.; Häring, M.; Kong, D.; Fletcher, A. G.; Alam, Z. & Grosshans, J. et al. (2023)
Molecular Biology of the Cell, art. mbc.E23-03-0077. DOI: https://doi.org/10.1091/mbc.E23-03-0077
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2023 | Journal Article
Boosting of neural circuit chaos at the onset of collective oscillations
Palmigiano, A.; Engelken, R. & Wolf, F. (2023)
eLife,. DOI: https://doi.org/10.7554/eLife.90378
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2023 | Preprint
SparseProp: Efficient Event-Based Simulation and Training of Sparse Recurrent Spiking Neural Networks
Engelken, R. (2023). DOI: https://doi.org/10.48550/ARXIV.2312.17216
Details DOI arXiv

2023 | Journal Article | Overview
The long-loop recycling (LLR) of synaptic components as a question of economics
Georgiev, S. & Rizzoli, S. (2023)
Molecular and Cellular Neuroscience, art. 103862. DOI: https://doi.org/10.1016/j.mcn.2023.103862
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2023 | Journal Article
Age-dependent structural reorganization of utricular ribbon synapses
Michanski, S.; Henneck, T.; Mukhopadhyay, M.; Steyer, A. M.; Gonzalez, P. A.; Grewe, K. & Ilgen, P. et al. (2023)
Frontiers in Cell and Developmental Biology, 11 art. 1178992. DOI: https://doi.org/10.3389/fcell.2023.1178992
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2023 | Journal Article | Overview
Neurodegenerative disease of the brain: a survey of interdisciplinary approaches
Davenport, F.; Gallacher, J.; Kourtzi, Z.; Koychev, I.; Matthews, P. M.; Oxtoby, N. P. & Parkes, L. M. et al. (2023)
Journal of The Royal Society Interface, 20(198) art. 20220406. DOI: https://doi.org/10.1098/rsif.2022.0406
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2023 | Journal Article | Overview
Phase Separation in Biology and Disease; Current Perspectives and Open Questions
Boeynaems, S.; Chong, S.; Gsponer, J.; Holt, L.; Milovanovic, D. ; Mitrea, D. M. & Mueller-Cajar, O. et al. (2023)
Journal of Molecular Biology, art. 167971. DOI: https://doi.org/10.1016/j.jmb.2023.167971
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2023 | Journal Article |
Baseline levels of miR-223-3p correlate with the effectiveness of electroconvulsive therapy in patients with major depression
Kaurani, L.; Besse, M.; Methfessel, I.; Methi, A.; Zhou, J.; Pradhan, R. & Burkhardt, S. et al. (2023)
Translational Psychiatry, 13(1). DOI: https://doi.org/10.1038/s41398-023-02582-4
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2023 | Journal Article | Overview
Is it all the RAGE ? Defining the role of the receptor for advanced glycation end products in Parkinson's disease
Gasparotto, J.; Somensi, N.; Girardi, C. S.; Bittencourt, R. R.; de Oliveira, L. M.; Hoefel, L. P. & Scheibel, I. M. et al. (2023)
Journal of Neurochemistry, art. jnc.15890. DOI: https://doi.org/10.1111/jnc.15890
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2023 | Journal Article
Control of intracellular pH and bicarbonate by CO2 diffusion into human sperm
Grahn, E.; Kaufmann, S. V.; Askarova, M.; Ninov, M.; Welp, L. M.; Berger, T. K. & Urlaub, H. et al. (2023)
Nature Communications, 14(1). DOI: https://doi.org/10.1038/s41467-023-40855-0
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2023 | Journal Article
Mammalian oocytes store proteins for the early embryo on cytoplasmic lattices
Jentoft, I. M. A.; Bäuerlein, F. J. B.; Welp, L. M.; Cooper, B. H.; Petrovic, A.; So, C. & Penir, S. M. et al. (2023)
Cell, 186(24) pp. 5308-5327.e25. DOI: https://doi.org/10.1016/j.cell.2023.10.003
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2023 | Journal Article
A viral ADP-ribosyltransferase attaches RNA chains to host proteins
Wolfram-Schauerte, M.; Pozhydaieva, N.; Grawenhoff, J.; Welp, L. M.; Silbern, I.; Wulf, A. & Billau, F. A. et al. (2023)
Nature, 620(7976) pp. 1054-1062. DOI: https://doi.org/10.1038/s41586-023-06429-2
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2022 | Journal Article |
Focused ion beam‐scanning electron microscopy links pathological myelin outfoldings to axonal changes in mice lacking Plp1 or Mag
Steyer, A. M.; Buscham, T. J.; Lorenz, C.; Hümmert, S.; Eichel‐Vogel, M. A.; Schadt, L. C. & Edgar, J. M. et al. (2022)
Glia, 71(3) art. glia.24290. DOI: https://doi.org/10.1002/glia.24290
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2022 | Journal Article | Research Paper
Resolving the molecular architecture of the photoreceptor active zone with 3D-MINFLUX
Grabner, C. P.; Jansen, I.; Neef, J.; Weihs, T.; Schmidt, R.; Riedel, D. & Wurm, C. A. et al. (2022)
Science Advances, 8(28) art. eabl7560. DOI: https://doi.org/10.1126/sciadv.abl7560
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2022 | Journal Article | Research Paper |
The small aromatic compound SynuClean-D inhibits the aggregation and seeded polymerization of multiple α-synuclein strains
Peña-Díaz, S.; Pujols, J.; Vasili, E.; Pinheiro, F.; Santos, J.; Manglano-Artuñedo, Z. & Outeiro, T. F. et al. (2022)
The Journal of Biological Chemistry, art. 101902. DOI: https://doi.org/10.1016/j.jbc.2022.101902
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2022 | Journal Article | Overview |
Extracellular Matrix Recycling as a Novel Plasticity Mechanism With a Potential Role in Disease
Dankovich, T. M. & Rizzoli, S. O. (2022)
Frontiers in Cellular Neuroscience, 16. DOI: https://doi.org/10.3389/fncel.2022.854897
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2022 | Journal Article | Overview |
The Synaptic Extracellular Matrix: Long-Lived, Stable, and Still Remarkably Dynamic
Dankovich, T. M. & Rizzoli, S. O. (2022)
Frontiers in Synaptic Neuroscience, 14. DOI: https://doi.org/10.3389/fnsyn.2022.854956
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2022 | Journal Article | Research Paper |
Prion-like α-synuclein pathology in the brain of infants with Krabbe disease
Hatton, C.; Ghanem, S. S.; Koss, D. J.; Abdi, I. Y.; Gibbons, E.; Guerreiro, R. & Bras, J. et al. (2022)
Brain: A Journal of Neurology,. DOI: https://doi.org/10.1093/brain/awac002
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2022 | Preprint
Conserved reduction of m6A marks during aging and neurodegeneration is linked to altered translation of synaptic transcripts
Castro-Hernández, R.; Berulava, T.; Metelova, M.; Epple, R.; Centeno, T. P.; Sakib, M S.& Burkhart, S. et al. (2022). DOI: https://doi.org/10.1101/2022.06.08.495100
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2022 | Preprint
DiSCERN - Deep Single Cell Expression ReconstructioN for improved cell clustering and cell subtype and state detection
Hausmann, F.; Ergen-Behr, C.; Khatri, R.; Marouf, M.; Hänzelmann, S.; Gagliani, N.& Huber, S. et al. (2022). DOI: https://doi.org/10.1101/2022.03.09.483600
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2022 | Preprint
Co-localization of different neurotransmitter transporters on synaptic vesicles is sparse except of VGLUT1 and ZnT3
Upmanyu, N.; Jin, J.; von der Emde, H.; Ganzella, M.; Bösche, L.; Malviya, V. N.& Zhuleku, E. et al. (2022). DOI: https://doi.org/10.1101/2021.06.30.449903
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2022 | Journal Article | Overview
Methods for multiscale structural and functional analysis of the mammalian cochlea
Vogl, C.; Neef, J. & Wichmann, C. (2022)
Molecular and Cellular Neuroscience, 120 art. S1044743122000264. DOI: https://doi.org/10.1016/j.mcn.2022.103720
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2022 | Conference Abstract
Abstract: A10.00009 : The role of protein constriction in the fission of membrane tubes
Spencer, R. K. & Müller, M. (2022)
APS March Meeting 2023, Las Vegas, Nevada.
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2022 | Preprint
Optogenetics and electron tomography for structure-function analysis of cochlear ribbon synapses
Chakrabarti, R.; Jaime Tobon, L. M.; Slitin, L.; Redondo-Canales, M.; Hoch, G.; Slashcheva, M.& Fritsch, E. et al. (2022). DOI: https://doi.org/10.1101/2022.05.10.491334
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2022 | Journal Article | Overview
Heterogeneity of glutamatergic synapses: cellular mechanisms and network consequences
Wichmann, C. & Kuner, T. (2022)
Physiological Reviews, 102(1) pp. 269-318. DOI: https://doi.org/10.1152/physrev.00039.2020
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2022 | Journal Article | Research Paper |
An iodine-containing probe as a tool for molecular detection in secondary ion mass spectrometry
Kabatas Glowacki, S.; Agüi-Gonzalez, P. ; Sograte-Idrissi, S.; Jähne, S. ; Opazo Davila, L. F. ; Phan, N. T. N. & Rizzoli, S. O. (2022)
Chemical Communications,. DOI: https://doi.org/10.1039/D2CC02290G
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2022 | Journal Article | Overview |
Extracellular alpha-synuclein: Sensors, receptors, and responses
Domingues, R.; Sant’Anna, R.; da Fonseca, A. C. C.; Robbs, B. K.; Foguel, D. & Outeiro, T. F. (2022)
Neurobiology of Disease, 168 art. S0969996122000882. DOI: https://doi.org/10.1016/j.nbd.2022.105696
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2022 | Journal Article | Research Paper |
Identification of distinct cytotoxic granules as the origin of supramolecular attack particles in T lymphocytes
Chang, H.-F.; Schirra, C.; Ninov, M.; Hahn, U.; Ravichandran, K.; Krause, E. & Becherer, U. et al. (2022)
Nature Communications, 13(1) art. 1029. DOI: https://doi.org/10.1038/s41467-022-28596-y
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2022 | Journal Article | Research Paper
The future of Parkinson’s disease research: A new paradigm of human-specific investigation is necessary… and possible
Cassotta, M. (2022)
ALTEX,. DOI: https://doi.org/10.14573/altex.2203161
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2022 | Journal Article
Molecular Mechanisms Mediating the Transfer of Disease-Associated Proteins and Effects on Neuronal Activity
Brás, I. C.; Khani, M. H. ; Vasili, E.; Möbius, W. ; Riedel, D. ; Parfentev, I. & Gerhardt, E. et al. (2022)
Journal of Parkinson's Disease, pp. 1-26. DOI: https://doi.org/10.3233/JPD-223516
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2022 | Journal Article | Overview |
Signals from the interface: protein nanoclusters stabilize biomolecular condensates
Hoffmann, C.; Rankovic, B. & Milovanovic, D. (2022)
Signal Transduction and Targeted Therapy, 7(1) pp. 16. DOI: https://doi.org/10.1038/s41392-022-00876-5
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2022 | Journal Article | Research Paper |
Aromaticity at position 39 in α‐synuclein: A modulator of amyloid fibril assembly and membrane‐bound conformations
Buratti, F. A.; Boeffinger, N.; Garro, H. A.; Flores, J. S.; Hita, F. J.; Gonçalves, P. do C. & Copello, F. dos R. et al. (2022)
Protein Science, 31(7). DOI: https://doi.org/10.1002/pro.4360
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2022 | Journal Article |
From Molecular to Functional Effects of Different Environmental Lead Exposure Paradigms
Shvachiy, L.; Amaro-Leal, Â.; Outeiro, T. F. ; Rocha, I. & Geraldes, V. (2022)
Biology, 11(8) pp. 1164. DOI: https://doi.org/10.3390/biology11081164
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2022 | Journal Article
Alpha-synuclein overexpression induces epigenomic dysregulation of glutamate signaling and locomotor pathways
Schaffner, S. L.; Wassouf, Z.; Lazaro, D. F.; Xylaki, M.; Gladish, N.; Lin, D. T. S. & MacIsaac, J. et al. (2022)
Human Molecular Genetics, art. ddac104. DOI: https://doi.org/10.1093/hmg/ddac104
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2022 | Journal Article | Research Paper |
Endogenous Levels of Alpha-Synuclein Modulate Seeding and Aggregation in Cultured Cells
Vasili, E.; Dominguez-Meijide, A.; Flores-León, M.; Al-Azzani, M.; Kanellidi, A.; Melki, R. & Stefanis, L. et al. (2022)
Molecular Neurobiology,. DOI: https://doi.org/10.1007/s12035-021-02713-2
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2022 | Journal Article | Research Paper
Ectosomes and exosomes modulate neuronal spontaneous activity
Brás, I. C.; Khani, M. H. ; Riedel, D. ; Parfentev, I.; Gerhardt, E. ; van Riesen, C. & Urlaub, H. et al. (2022)
Journal of Proteomics, 269 art. 104721. DOI: https://doi.org/10.1016/j.jprot.2022.104721
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2022 | Journal Article | Research Paper |
Glycation modulates glutamatergic signaling and exacerbates Parkinson’s disease-like phenotypes
Chegão, A.; Guarda, M.; Alexandre, B. M.; Shvachiy, L.; Temido-Ferreira, M.; Marques-Morgado, I. & Fernandes Gomes, B. et al. (2022)
npj Parkinson's Disease, 8(1) art. 51. DOI: https://doi.org/10.1038/s41531-022-00314-x
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2022 | Journal Article
Extracellular vesicles derived from the choroid plexus trigger the differentiation of neural stem cells
Ditte, Z.; Silbern, I.; Ditte, P.; Urlaub, H. & Eichele, G. (2022)
Journal of Extracellular Vesicles, 11(11) pp. 12276. DOI: https://doi.org/10.1002/jev2.12276
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2022 | Journal Article |
Optogenetics and electron tomography for structure-function analysis of cochlear ribbon synapses
Chakrabarti, R.; Jaime Tobón, L. M.; Slitin, L.; Redondo-Canales, M.; Hoch, G.; Slashcheva, M. & Fritsch, E. et al. (2022)
eLife, 11 art. e79494. DOI: https://doi.org/10.7554/eLife.79494
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2022 | Journal Article | Research Paper |
Colocalization of different neurotransmitter transporters on synaptic vesicles is sparse except for VGLUT1 and ZnT3
Upmanyu, N.; Jin, J.; Emde, H. von der; Ganzella, M.; Bösche, L.; Malviya, V. N. & Zhuleku, E. et al. (2022)
Neuron,. DOI: https://doi.org/10.1016/j.neuron.2022.02.008
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2022 | Journal Article
JM-20, a Benzodiazepine-Dihydropyridine Hybrid Molecule, Inhibits the Formation of Alpha-Synuclein-Aggregated Species
Santos, C. C.; Cardim-Pires, T. R.; Shvachiy, L.; Fonseca-Fonseca, L. A.; Muñoz, P.; Almeida, Á. M. A. N. & Costa, A. C. S. et al. (2022)
Neurotoxicity Research,. DOI: https://doi.org/10.1007/s12640-022-00559-7
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2022 | Journal Article | Research Paper |
Optimal precision and accuracy in 4Pi-STORM using dynamic spline PSF models
Bates, M.; Keller-Findeisen, J.; Przybylski, A.; Hüper, A.; Stephan, T.; Ilgen, P. & Cereceda Delgado, A. R. et al. (2022)
Nature Methods, 19(5) pp. 603-612. DOI: https://doi.org/10.1038/s41592-022-01465-8
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2022 | Journal Article | Research Paper |
Monitoring the interactions between alpha-synuclein and Tau in vitro and in vivo using bimolecular fluorescence complementation
Torres-Garcia, L.; P. Domingues, J. M.; Brandi, E.; Haikal, C.; Mudannayake, J. M.; Brás, I. C. & Gerhardt, E. et al. (2022)
Scientific Reports, 12(1) art. 2987. DOI: https://doi.org/10.1038/s41598-022-06846-9
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2022 | Journal Article |
Nuclear alpha-synuclein is present in the human brain and is modified in dementia with Lewy bodies
Koss, D. J.; Erskine, D.; Porter, A.; Palmoski, P.; Menon, H.; Todd, O. G. J. & Leite, M. et al. (2022)
Acta Neuropathologica Communications, 10(1). DOI: https://doi.org/10.1186/s40478-022-01403-x
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2022 | Journal Article
ERR2 and ERR3 promote the development of gamma motor neuron functional properties required for proprioceptive movement control
Khan, M. N.; Cherukuri, P.; Negro, F.; Rajput, A.; Fabrowski, P.; Bansal, V. & Lancelin, C. et al. (2022)
PLoS Biology, 20(12) art. e3001923. DOI: https://doi.org/10.1371/journal.pbio.3001923
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2021 | Journal Article | Research Paper
Three-dimensional virtual histology of the cerebral cortex based on phase-contrast X-ray tomography
Eckermann, M.; van der Meer, F.; Cloetens, P.; Ruhwedel, T.; Möbius, W. ; Stadelmann, C. & Salditt, T. (2021)
Biomedical Optics Express, 12(12) pp. 7582. DOI: https://doi.org/10.1364/BOE.434885
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2021 | Journal Article | Research Paper |
Exercise as a model to identify microRNAs linked to human cognition: a role for microRNA-409 and microRNA-501
Goldberg, M.; Islam, M. R.; Kerimoglu, C.; Lancelin, C.; Gisa, V.; Burkhardt, S. & Krüger, D. M. et al. (2021)
Translational Psychiatry, 11(1) art. 514. DOI: https://doi.org/10.1038/s41398-021-01627-w
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2021 | Book Chapter
Management of Metadata Types in Basic Cardiological Research
Kusch, H. ; Kossen, R. ; Suhr, M.; Freckmann, L.; Weber, L.; Henke, C.& Lehmann, C. et al. (2021)
In:Röhrig, Rainer; Beißbarth, Tim; König, Jochem; Ose, Claudia; Rauch, Geraldine; Sax, Ulrich; Schreiweis, Björn, et al. (Eds.), German Medical Data Sciences 2021: Digital Medicine: Recognize – Understand – Heal pp. 59-68. DOI: https://doi.org/10.3233/SHTI210542
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2021 | Journal Article | Research Paper |
Differences in synaptic vesicle pool behavior between male and female hippocampal cultured neurons
Sertel, S. M.; Blumenstein, W.; Mandad, S.; Shomroni, O.; Salinas, G. & Rizzoli, S. O. (2021)
Scientific Reports, 11(1) art. 17374. DOI: https://doi.org/10.1038/s41598-021-96846-y
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2021 | Journal Article | Research Paper |
The effect of polydispersity, shape fluctuations and curvature on small unilamellar vesicle small-angle X-ray scattering curves
Chappa, V.; Smirnova, Y. G. ; Komorowski, K. ; Müller, M. & Salditt, T. (2021)
Journal of Applied Crystallography, 54(2) pp. 557-568. DOI: https://doi.org/10.1107/S1600576721001461
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2021 | Journal Article | Research Paper |
Exploring early time points of vimentin assembly in flow by fluorescence fluctuation spectroscopy
Perego, E. & Köster, S. (2021)
Lab on a Chip, 21(4) pp. 735-745. DOI: https://doi.org/10.1039/d0lc00985g
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2021 | Journal Article | Research Paper |
Reproducing asymmetrical spine shape fluctuations in a model of actin dynamics predicts self-organized criticality
Bonilla-Quintana, M.; Wörgötter, F.; D’Este, E.; Tetzlaff, C. & Fauth, M. (2021)
Scientific Reports, 11(1). DOI: https://doi.org/10.1038/s41598-021-83331-9
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2021 | Journal Article | Research Paper |
The Coding and Small Non-coding Hippocampal Synaptic RNAome
Epple, R.; Krüger, D.; Berulava, T.; Brehm, G. ; Ninov, M.; Islam, R. & Köster, S. et al. (2021)
Molecular Neurobiology,. DOI: https://doi.org/10.1007/s12035-021-02296-y
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2021 | Journal Article | Research Paper |
Hippocampal neurons respond to brain activity with functional hypoxia
Butt, U. J.; Steixner-Kumar, A. A.; Depp, C.; Sun, T.; Hassouna, I.; Wüstefeld, L. & Arinrad, S. et al. (2021)
Molecular Psychiatry, 26(6) pp. 1790-1807. DOI: https://doi.org/10.1038/s41380-020-00988-w
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2021 | Journal Article | Research Paper |
Sulthiame impairs mitochondrial function in vitro and may trigger onset of visual loss in Leber hereditary optic neuropathy
Reinert, M.-C.; Pacheu-Grau, D.; Catarino, C. B.; Klopstock, T.; Ohlenbusch, A.; Schittkowski, M. & Wilichowski, E. et al. (2021)
Orphanet Journal of Rare Diseases, 16(1) art. 64. DOI: https://doi.org/10.1186/s13023-021-01690-y
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2021 | Journal Article | Research Paper |
NanoSIMS observations of mouse retinal cells reveal strict metabolic controls on nitrogen turnover
Bonnin, E. A.; Fornasiero, E. F.; Lange, F.; Turck, C. W. & Rizzoli, S. O. (2021)
BMC Molecular and Cell Biology, 22(1) art. 5. DOI: https://doi.org/10.1186/s12860-020-00339-1
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2021 | Journal Article | Research Paper |
Post-translational modifications soften vimentin intermediate filaments
Kraxner, J.; Lorenz, C.; Menzel, J. ; Parfentev, I.; Silbern, I.; Denz, M. & Urlaub, H. et al. (2021)
Nanoscale, 13(1) pp. 380-387. DOI: https://doi.org/10.1039/D0NR07322A
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2021 | Preprint
Alpha-synuclein induces epigenomic dysregulation of glutamate signaling and locomotor pathways
Schaffner, S. L.; Wassouf, Z.; Lazaro, D. F.; Xylaki, M.; Gladish, N.; Lin, D. T. S.& MacIsaac, J. et al. (2021). DOI: https://doi.org/10.1101/2021.06.12.448150
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2021 | Preprint
Cofilin pathology is a new player on α-synuclein-induced spine impairment in models of hippocampal synucleinopathy
Oliveira da Silva, M. I.; Santejo, M.; Babcock, I. W.; Magalhães, A.; Minamide, L. S.; Castillo, E.& Gerhardt, E. et al. (2021). DOI: https://doi.org/10.1101/2021.02.02.425931
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2021 | Preprint
Endogenous Levels of Alpha-synuclein Modulate Seeding and Aggregation in Cultured Cells
Vasili, E.; Dominguez-Meijide, A.; Flores-Léon, M.; Al-Azzani, M.; Kanellidi, A.; Melki, R.& Stefanis, L. et al. (2021). DOI: https://doi.org/10.21203/rs.3.rs-1152192/v1
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2021 | Preprint
Super-resolution microscopy informs on the molecular architecture of alpha-synuclein inclusions in model systems and in the human brain
Weish, P.; Lázaro, D. F.; Palmares, L.; Santos, P. I.; Stadelmann, C. ; Höglinger, G. U.& Rizzoli, S. O. et al. (2021). DOI: https://doi.org/10.1101/2021.04.25.441304
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2021 | Preprint
Monitoring Alpha-Synuclein – Tau Interactions In Vitro and In Vivo Using Bimolecular Fluorescence Complementation
Torres-Garcia, L.; Domingues, J. M.; Brandi, E.; Haikal, C.; Brás, I. C.; Gerhardt, E.& Li, W. et al. (2021). DOI: https://doi.org/10.21203/rs.3.rs-960446/v1
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2021 | Preprint
Resolving the molecular architecture of the photoreceptor active zone by MINFLUX nanoscopy
Grabner, C. P.; Jansen, I.; Neef, J.; Weiss, T.; Schmidt, R.; Riedel, D.& Wurm, C. A. et al. (2021). DOI: https://doi.org/10.1101/2021.05.28.446138
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2021 | Preprint
Common molecular mechanisms underlie the transfer of alpha-synuclein, Tau and huntingtin and modulate spontaneous activity in neuronal cells
Brás, I. C.; Khani, M. H.; Vasili, E.; Möbius, W. ; Riedel, D.; Parfentev, I.& Gerhardt, E. et al. (2021). DOI: https://doi.org/10.1101/2021.07.18.452825
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2021 | Preprint
Nuclear alpha-synuclein is present in the human brain and is modified in dementia with Lewy bodies
Koss, D. J.; Erskine, D.; Porter, A.; Palmoski, P.; Leite, M.; Attems, J.& Outeiro, T. F. (2021). DOI: https://doi.org/10.1101/2021.10.20.465125
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2021 | Preprint
Gold-conjugated Nanobodies for Targeted Imaging using High-resolution Secondary Ion Mass Spectrometry
Agüi-Gonzalez, P.; Dankovich, T. M.; Opazo, F.; Rizzoli, S. O. & Phan, N. T. N. (2021). DOI: https://doi.org/10.20944/preprints202105.0687.v1
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2021 | Preprint
RIM-Binding Protein 2 organizes Ca2+ channel topography and regulates release probability and vesicle replenishment at a fast central synapse
Butola, T.; Alvanos, T.; Hintze, A.; Koppensteiner, P.; Kleindienst, D.; Shigemoto, R.& Wichmann, C. et al. (2021). DOI: https://doi.org/10.1101/2021.03.20.435607
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2021 | Research Data
GMDS2021 ePoster and video teaser for DOI 10.3205/21gmds072
Kusch, H. ; Bauer, C. R.; Bender, T.; Hügel, J. ; Kossen, R. ; Nußbeck, S. Y.& Sax, U. (2021)
GRO.data. DOI: https://doi.org/10.25625/8vukqa
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2021 | Journal Article | Research Paper |
Ultrastructural maturation of the endbulb of Held active zones comparing wild-type and otoferlin-deficient mice
Hintze, A.; Gültas, M.; Semmelhack, E. A. & Wichmann, C. (2021)
iScience, 24(4) pp. 102282. DOI: https://doi.org/10.1016/j.isci.2021.102282
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2021 | Journal Article | Research Paper |
Postnatal expression of the lysine methyltransferase SETD1B is essential for learning and the regulation of neuron‐enriched genes
Michurina, A.; Sakib, M S.; Kerimoglu, C. ; Krüger, D. M.; Kaurani, L. ; Islam, M. R. & Joshi, P. D. et al. (2021)
The EMBO Journal,. DOI: https://doi.org/10.15252/embj.2020106459
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2021 | Journal Article | Research Paper |
Surface tension and viscosity of protein condensates quantified by micropipette aspiration
Wang, H.; Kelley, F. M.; Milovanovic, D. ; Schuster, B. S. & Shi, Z. (2021)
Biophysical Reports, 1(1) art. 100011. DOI: https://doi.org/10.1016/j.bpr.2021.100011
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2021 | Journal Article | Overview |
Punctuated evolution of visual cortical circuits? Evidence from the large rodent Dasyprocta leporina, and the tiny primate Microcebus murinus
Schmidt, K. E. & Wolf, F. (2021)
Current Opinion in Neurobiology, 71 pp. 110-118. DOI: https://doi.org/10.1016/j.conb.2021.10.007
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2021 | Journal Article | Research Paper |
Low-Expressing Synucleinopathy Mouse Models Based on Oligomer-Forming Mutations and C-Terminal Truncation of α-Synuclein
Martinez Hernandez, A. ; Silbern, I.; Geffers, I.; Tatenhorst, L. ; Becker, S. ; Urlaub, H. & Zweckstetter, M. et al. (2021)
Frontiers in Neuroscience, 15. DOI: https://doi.org/10.3389/fnins.2021.643391
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2021 | Journal Article | Research Paper
A large-scale nanoscopy and biochemistry analysis of postsynaptic dendritic spines
Helm, M. S.; Dankovich, T. M.; Mandad, S. ; Rammner, B.; Jähne, S. ; Salimi, V. & Koerbs, C. et al. (2021)
Nature Neuroscience, 24(8) pp. 1151-1162. DOI: https://doi.org/10.1038/s41593-021-00874-w
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2021 | Journal Article | Research Paper
RIM-Binding Protein 2 Organizes Ca2+ Channel Topography and Regulates Release Probability and Vesicle Replenishment at a Fast Central Synapse
Butola, T.; Alvanos, T.; Hintze, A.; Koppensteiner, P.; Kleindienst, D.; Shigemoto, R. & Wichmann, C. et al. (2021)
The Journal of Neuroscience, 41(37) pp. 7742-7767. DOI: https://doi.org/10.1523/JNEUROSCI.0586-21.2021
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2021 | Journal Article | Research Paper
Tubular microdomains of Rab7-positive endosomes retrieve TrkA, a mechanism disrupted in Charcot-Marie-Tooth disease 2B
Markworth, R.; Dambeck, V.; Steinbeck, L. M.; Koufali, A.; Bues, B.; Dankovich, T. M. & Wichmann, C. et al. (2021)
Journal of Cell Science, 134(20). DOI: https://doi.org/10.1242/jcs.258559
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2021 | Journal Article | Overview |
Lipids, lysosomes and mitochondria: insights into Lewy body formation from rare monogenic disorders
Erskine, D.; Koss, D.; Korolchuk, V. I.; Outeiro, T. F. ; Attems, J. & McKeith, I. (2021)
Acta Neuropathologica, 141(4) pp. 511-526. DOI: https://doi.org/10.1007/s00401-021-02266-7
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2021 | Journal Article | Research Paper |
Clonal expansion and activation of tissue-resident memory-like Th17 cells expressing GM-CSF in the lungs of severe COVID-19 patients
Zhao, Y.; Kilian, C.; Turner, J.-E.; Bosurgi, L.; Roedl, K.; Bartsch, P. & Gnirck, A.-C. et al. (2021)
Science Immunology, 6(56). DOI: https://doi.org/10.1126/sciimmunol.abf6692
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2021 | Journal Article | Research Paper |
RIM-Binding Proteins Are Required for Normal Sound-Encoding at Afferent Inner Hair Cell Synapses
Burfeind, D.; Moser, T. ; Krinner, S.; Predoehl, F. & Vogl, C. (2021)
Frontiers in Molecular Neuroscience, 14 art. 651935. DOI: https://doi.org/10.3389/fnmol.2021.651935
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2021 | Journal Article | Research Paper |
Intranuclear immunostaining-based FACS protocol from embryonic cortical tissue
Sakib, M. S.; Sokpor, G. ; Nguyen, H. P.; Fischer, A. & Tuoc, T. (2021)
STAR Protocols, 2(1) pp. 100318. DOI: https://doi.org/10.1016/j.xpro.2021.100318
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2021 | Journal Article | Research Paper |
Bias-invariant RNA-sequencing metadata annotation
Wartmann, H.; Heins, S.; Kloiber, K. & Bonn, S. (2021)
GigaScience, 10(9). DOI: https://doi.org/10.1093/gigascience/giab064
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2021 | Journal Article | Research Paper |
Alpha-Synuclein Antibody Characterization: Why Semantics Matters
Outeiro, T. F. (2021)
Molecular Neurobiology, 58(5) pp. 2202-2203. DOI: https://doi.org/10.1007/s12035-020-02269-7
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2021 | Journal Article | Research Paper |
Cellular Prion Protein Mediates α‐Synuclein Uptake, Localization, and Toxicity In Vitro and In Vivo
Thom, T.; Schmitz, M.; Fischer, A.; Correia, A.; Correia, S.; Llorens, F. & Pique, A. et al. (2021)
Movement Disorders, 37(1) art. mds.28774. DOI: https://doi.org/10.1002/mds.28774
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2021 | Journal Article | Research Paper |
Doxycycline inhibits α-synuclein-associated pathologies in vitro and in vivo
Dominguez-Meijide, A.; Parrales, V.; Vasili, E.; González-Lizárraga, F.; König, A.; Lázaro, D. F. & Lannuzel, A. et al. (2021)
Neurobiology of Disease, 151 pp. 105256. DOI: https://doi.org/10.1016/j.nbd.2021.105256
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2021 | Journal Article | Research Paper |
Monitoring mitochondrial translation in living cells
Yousefi, R.; Fornasiero, E. F ; Cyganek, L. ; Montoya, J.; Jakobs, S. ; Rizzoli, S. O & Rehling, P. et al. (2021)
EMBO reports, 22(4). DOI: https://doi.org/10.15252/embr.202051635
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2021 | Journal Article | Research Paper |
Conditional Loss of BAF (mSWI/SNF) Scaffolding Subunits Affects Specification and Proliferation of Oligodendrocyte Precursors in Developing Mouse Forebrain
Abbas, E.; Hassan, M. A.; Sokpor, G.; Kiszka, K.; Pham, L.; Kerimoglu, C. & Fischer, A. et al. (2021)
Frontiers in Cell and Developmental Biology, 9. DOI: https://doi.org/10.3389/fcell.2021.619538
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2021 | Journal Article | Overview |
Dysfunction of RAB39B‐ Mediated Vesicular Trafficking in Lewy Body Diseases
Koss, D. J.; Campesan, S.; Giorgini, F. & Outeiro, T. F. (2021)
Movement Disorders,. DOI: https://doi.org/10.1002/mds.28605
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2021 | Journal Article | Overview |
Alpha-synuclein research: defining strategic moves in the battle against Parkinson’s disease
Oliveira, L. M. A.; Gasser, T.; Edwards, R.; Zweckstetter, M. ; Melki, R.; Stefanis, L. & Lashuel, H. A. et al. (2021)
npj Parkinson's Disease, 7(1) art. 65. DOI: https://doi.org/10.1038/s41531-021-00203-9
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2021 | Journal Article | Research Paper |
Presynaptic activity and protein turnover are correlated at the single-synapse level
Jähne, S. ; Mikulasch, F.; Heuer, H. G.; Truckenbrodt, S.; Agüi-Gonzalez, P. ; Grewe, K. & Vogts, A. et al. (2021)
Cell Reports, 34(11) pp. 108841. DOI: https://doi.org/10.1016/j.celrep.2021.108841
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2021 | Journal Article | Research Paper |
Protein Phosphorylation in Depolarized Synaptosomes: Dissecting Primary Effects of Calcium from Synaptic Vesicle Cycling
Silbern, I.; Pan, K.-T.; Fiosins, M.; Bonn, S. ; Rizzoli, S. O. ; Fornasiero, E. F. & Urlaub, H. et al. (2021)
Molecular & Cellular Proteomics, 20 pp. 100061. DOI: https://doi.org/10.1016/j.mcpro.2021.100061
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2021 | Journal Article | Research Paper |
A microRNA signature that correlates with cognition and is a target against cognitive decline
Islam, M. R.; Kaurani, L.; Berulava, T.; Heilbronner, U.; Budde, M.; Centeno, T. P. & Elerdashvili, V. et al. (2021)
EMBO Molecular Medicine, 13(11). DOI: https://doi.org/10.15252/emmm.202013659
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2021 | Journal Article | Research Paper |
The mammalian rod synaptic ribbon is essential for Cav channel facilitation and ultrafast synaptic vesicle fusion
Grabner, C. P. & Moser, T. (2021)
eLife, 10. DOI: https://doi.org/10.7554/eLife.63844
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2021 | Journal Article | Research Paper |
Non-negative Matrix Factorization as a Tool to Distinguish Between Synaptic Vesicles in Different Functional States
Neher, E. & Taschenberger, H. (2021)
Neuroscience, 458 pp. 182-202. DOI: https://doi.org/10.1016/j.neuroscience.2020.10.012
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2021 | Journal Article | Research Paper
Principles of brain aging: Status and challenges of modeling human molecular changes in mice
Kluever, V. & Fornasiero, E. F. (2021)
Ageing Research Reviews, 72 art. S1568163721002129. DOI: https://doi.org/10.1016/j.arr.2021.101465
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2021 | Journal Article | Research Paper |
Extracellular matrix remodeling through endocytosis and resurfacing of Tenascin-R
Dankovich, T. M.; Kaushik, R.; Olsthoorn, L. H. M.; Petersen, G. C.; Giro, P. E.; Kluever, V. & Agüi-Gonzalez, P. et al. (2021)
Nature Communications, 12(1) art. 7129. DOI: https://doi.org/10.1038/s41467-021-27462-7
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2021 | Journal Article | Research Paper |
Molecular Profiling Reveals Involvement of ESCO2 in Intermediate Progenitor Cell Maintenance in the Developing Mouse Cortex
Ulmke, P. A.; Sakib, M. S.; Ditte, P.; Sokpor, G. ; Kerimoglu, C. ; Pham, L. & Xie, Y. et al. (2021)
Stem Cell Reports, 16(4) pp. 968-984. DOI: https://doi.org/10.1016/j.stemcr.2021.03.008
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2021 | Journal Article | Research Paper |
Secondary Ion Mass Spectrometry Imaging Reveals Changes in the Lipid Structure of the Plasma Membranes of Hippocampal Neurons following Drugs Affecting Neuronal Activity
Agüi-Gonzalez, P. ; Bao, G. ; Gomes de Castro, M. A. ; Rizzoli, S. O. & Phan, N. T. N. (2021)
ACS Chemical Neuroscience, 12(9) pp. 1542-1551. DOI: https://doi.org/10.1021/acschemneuro.1c00031
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2021 | Journal Article | Research Paper
Allosteric transcription stimulation by RNA polymerase II super elongation complex
Chen, Y.; Vos, S. M.; Dienemann, C.; Ninov, M.; Urlaub, H. & Cramer, P. (2021)
Molecular Cell, 81(16) pp. 3386.e10-3399.e10. DOI: https://doi.org/10.1016/j.molcel.2021.06.019
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2021 | Journal Article | Research Paper |
Munc13-1 is a Ca2+-phospholipid-dependent vesicle priming hub that shapes synaptic short-term plasticity and enables sustained neurotransmission
Lipstein, N.; Chang, S.; Lin, K.-H.; López-Murcia, F. J.; Neher, E. ; Taschenberger, H. & Brose, N. (2021)
Neuron, 109(24) pp. 3980-4000.e7. DOI: https://doi.org/10.1016/j.neuron.2021.09.054
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2021 | Journal Article | Research Paper |
Interferon-driven brain phenotype in a mouse model of RNaseT2 deficient leukoencephalopathy
Kettwig, M.; Ternka, K.; Wendland, K.; Krüger, D. M.; Zampar, S.; Schob, C. & Franz, J. et al. (2021)
Nature Communications, 12(1) art. 6530. DOI: https://doi.org/10.1038/s41467-021-26880-x
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2021 | Journal Article | Research Paper |
Synapsin Condensates Recruit alpha-Synuclein
Hoffmann, C.; Sansevrino, R.; Morabito, G.; Logan, C.; Vabulas, R M.; Ulusoy, A. & Ganzella, M. et al. (2021)
Journal of Molecular Biology, 433(12) art. 166961. DOI: https://doi.org/10.1016/j.jmb.2021.166961
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2021 | Journal Article | Overview |
The vesicle cluster as a major organizer of synaptic composition in the short-term and long-term
Reshetniak, S. & Rizzoli, S. O. (2021)
Current Opinion in Cell Biology, 71 pp. 63-68. DOI: https://doi.org/10.1016/j.ceb.2021.02.007
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2021 | Journal Article |
Gold-Conjugated Nanobodies for Targeted Imaging Using High-Resolution Secondary Ion Mass Spectrometry
Agüi-Gonzalez, P. ; Dankovich, T. M.; Rizzoli, S. O. & Phan, N. T. N. (2021)
Nanomaterials, 11(7) pp. 1797. DOI: https://doi.org/10.3390/nano11071797
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2021 | Journal Article | Overview |
Challenges facing quantitative large-scale optical super-resolution, and some simple solutions
Dankovich, T. M. & Rizzoli, S. O. (2021)
iScience, 24(3) pp. 102134. DOI: https://doi.org/10.1016/j.isci.2021.102134
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2021 | Journal Article | Research Paper |
Rho‐kinase inhibition by fasudil modulates pre‐synaptic vesicle dynamics
Saal, K. A. ; Warth Pérez Arias, C.; Roser, A. ; Christoph Koch, J.; Bähr, M. ; Rizzoli, S. O. & Lingor, P. (2021)
Journal of Neurochemistry, pp. n/a-n/a. DOI: https://doi.org/10.1111/jnc.15274
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2021 | Journal Article | Research Paper
Phagocyte-mediated synapse removal in cortical neuroinflammation is promoted by local calcium accumulation
Jafari, M.; Schumacher, A.-M.; Snaidero, N.; Ullrich Gavilanes, E. M.; Neziraj, T.; Kocsis-Jutka, V. & Engels, D. et al. (2021)
Nature Neuroscience, 24(3) pp. 355-367. DOI: https://doi.org/10.1038/s41593-020-00780-7
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2021 | Journal Article | Research Paper
The mRNA-Binding Protein RBM3 Regulates Activity Patterns and Local Synaptic Translation in Cultured Hippocampal Neurons
Sertel, S. M.; von Elling-Tammen, M. S. & Rizzoli, S. O. (2021)
The Journal of Neuroscience, 41(6) pp. 1157-1173. DOI: https://doi.org/10.1523/JNEUROSCI.0921-20.2020
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2020 | Journal Article | Research Paper |
A minimalist model to measure interactions between proteins and synaptic vesicles
Perego, E.; Reshetniak, S.; Lorenz, C.; Hoffmann, C.; Milovanović, D. ; Rizzoli, S. O. & Köster, S. (2020)
Scientific Reports, 10(1). DOI: https://doi.org/10.1038/s41598-020-77887-1
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2020 | Preprint
The Coding And Small-Non-Coding Hippocampal Synaptic RNAome
Epple, R.; Krüger, D.; Berulava, T.; Brehm, G.; Islam, R.; Köster, S. & Fischer, A. (2020). DOI: https://doi.org/10.1101/2020.11.27.401901
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2020 | Journal Article | Research Paper |
A comparative analysis of the mobility of 45 proteins in the synaptic bouton
Reshetniak, S.; Ußling, J.; Perego, E.; Rammner, B.; Schikorski, T.; Fornasiero, E. F. & Truckenbrodt, S. et al. (2020)
The EMBO Journal, 39(16). DOI: https://doi.org/10.15252/embj.2020104596
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2020 | Journal Article | Research Paper |
Vesicle adhesion in the electrostatic strong-coupling regime studied by time-resolved small-angle X-ray scattering
Komorowski, K. ; Sztucki, M.; Sharpnack, L.; Brehm, G. ; Köster, S. ; Salditt, T. & Schaeper, J. (2020)
Soft Matter, 16(17) pp. 4142-4154. DOI: https://doi.org/10.1039/D0SM00259C
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2020 | Journal Article | Research Paper
Kinetic coupling of the respiratory chain with ATP synthase, but not proton gradients, drives ATP production in cristae membranes
Toth, A.; Meyrat, A.; Stoldt, S. ; Santiago, R.; Wenzel, D. ; Jakobs, S. & von Ballmoos, C. et al. (2020)
Proceedings of the National Academy of Sciences of the United States of America, 117(5) pp. 2412-2421. DOI: https://doi.org/10.1073/pnas.1917968117
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2020 | Preprint
Doxycycline inhibits α-synuclein-associated pathologies in vitro and in vivo
Dominguez-Meijide, A.; Parrales, V.; Vasili, E.; González-Lizárraga, F.; König, A.; Lázaro, D. F.& Lannuzel, A. et al. (2020). DOI: https://doi.org/10.1101/2020.11.06.371229
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2020 | Preprint
Local translation in synaptic mitochondria influences synaptic transmission
Yousefi, R.; Fornasiero, E. F.; Cyganek, L.; Jakobs, S. ; Rizzoli, S. O. ; Rehling, P. & Pacheu-Grau, D. (2020). DOI: https://doi.org/10.1101/2020.07.22.215194
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2020 | Preprint
The Role of Alpha-Synuclein And Other Parkinson’s Genes in Neurodevelopmental and Neurodegenerative Disorders
Morato Torres, C. A.; Wassouf, Z.; Zafar, F.; Sastre, D.; Outeiro, T. F. & Schüle, B. (2020). DOI: https://doi.org/10.20944/preprints202007.0334.v1
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2020 | Preprint
Extracellular matrix remodeling through endocytosis and resurfacing of Tenascin-R
Dankovich, T. M.; Kaushik, R.; Petersen, G. C.; Giro, P. E.; Hadi, H. A.; Bao, G.& Beuermann, S. et al. (2020). DOI: https://doi.org/10.1101/2020.11.11.377515
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2020 | Journal Article | Research Paper
Neuropathology of patients with COVID-19 in Germany: a post-mortem case series
Matschke, J.; Lütgehetmann, M.; Hagel, C.; Sperhake, J. P; Schröder, A. S.; Edler, C. & Mushumba, H. et al. (2020)
The Lancet. Neurology, 19(11) pp. 919-929. DOI: https://doi.org/10.1016/S1474-4422(20)30308-2
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2020 | Journal Article | Research Paper |
Developmental GABA polarity switch and neuronal plasticity in Bioengineered Neuronal Organoids
Zafeiriou, M.-P. ; Bao, G. ; Hudson, J. ; Halder, R. ; Blenkle, A.; Schreiber, M.-K. & Fischer, A. et al. (2020)
Nature Communications, 11(1). DOI: https://doi.org/10.1038/s41467-020-17521-w
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2020 | Journal Article | Editorial Contribution (Editorial, Introduction, Epilogue) |
Editorial: Protein Misfolding and Spreading Pathology in Neurodegenerative Diseases
Lázaro, D. F. ; Bellucci, A.; Brundin, P. & Outeiro, T. F. (2020)
Frontiers in Molecular Neuroscience, 12. DOI: https://doi.org/10.3389/fnmol.2019.00312
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2020 | Journal Article | Research Paper |
Neuroligin-2 dependent conformational activation of collybistin reconstituted in supported hybrid membranes
Schäfer, J. ; Förster, L.; Mey, I. ; Papadopoulos, T. ; Brose, N. & Steinem, C. (2020)
Journal of Biological Chemistry, 295(52) pp. 18604-18613. DOI: https://doi.org/10.1074/jbc.RA120.015347
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2020 | Journal Article | Research Paper
MINFLUX nanoscopy delivers 3D multicolor nanometer resolution in cells
Gwosch, K. C.; Pape, J. K.; Balzarotti, F.; Hoess, P.; Ellenberg, J.; Ries, J. & Hell, S. W. (2020)
Nature Methods, 17(2) pp. 217-224. DOI: https://doi.org/10.1038/s41592-019-0688-0
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2020 | Journal Article | Research Paper |
RAB39B is redistributed in dementia with Lewy bodies and is sequestered within aβ plaques and Lewy bodies
Koss, D. J.; Bondarevaite, O.; Adams, S.; Leite, M.; Giorgini, F.; Attems, J. & Outeiro, T. F. (2020)
Brain Pathology, 31(1) pp. 120-132. DOI: https://doi.org/10.1111/bpa.12890
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2020 | Journal Article | Research Paper |
The self-organized learning of noisy environmental stimuli requires distinct phases of plasticity
Krüppel, S. & Tetzlaff, C. (2020)
Network Neuroscience, 4(1) pp. 174-199. DOI: https://doi.org/10.1162/netn_a_00118
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2020 | Journal Article | Research Paper |
Synaptic activity and strength are reflected by changes in the post-synaptic secretory pathway
Gürth, C.-M.; Dankovich, T. M.; Rizzoli, S. O. & D’Este, E. (2020)
Scientific Reports, 10(1). DOI: https://doi.org/10.1038/s41598-020-77260-2
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2020 | Journal Article | Research Paper
Leaflet-Dependent Distribution of PtdIns[4,5]P 2 in Supported Model Membranes
Schäfer, J. ; Nehls, J.; Schön, M.; Mey, I. & Steinem, C. (2020)
Langmuir, 36(5) pp. 1320-1328. DOI: https://doi.org/10.1021/acs.langmuir.9b03793
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2020 | Journal Article | Research Paper |
Quantitative Synaptic Biology: A Perspective on Techniques, Numbers and Expectations
Reshetniak, S.; Fernández Busnadiego, R. ; Müller, M. ; Rizzoli, S. O. & Tetzlaff, C. (2020)
International Journal of Molecular Sciences, 21(19) pp. 7298. DOI: https://doi.org/10.3390/ijms21197298
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2020 | Journal Article | Overview |
Synucleinopathies: Where we are and where we need to go
Brás, I. C.; Dominguez‐Meijide, A.; Gerhardt, E. ; Koss, D.; Lázaro, D. F. ; Santos, P. I. & Vasili, E. et al. (2020)
Journal of Neurochemistry, 153(4) pp. 433-454. DOI: https://doi.org/10.1111/jnc.14965
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2020 | Journal Article | Research Paper |
Protein trapping leads to altered synaptic proteostasis in synucleinopathies
Santos, P. I. & Outeiro, T. F. (2020)
The FEBS Journal,. DOI: https://doi.org/10.1111/febs.15364
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2020 | Journal Article | Research Paper |
Ultrastructural Correlates of Presynaptic Functional Heterogeneity in Hippocampal Synapses
Maus, L.; Lee, C.; Altas, B.; Sertel, S. M.; Weyand, K.; Rizzoli, S. O. & Rhee, J. et al. (2020)
Cell Reports, 30(11) pp. 3632-3643.e8. DOI: https://doi.org/10.1016/j.celrep.2020.02.083
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2020 | Journal Article | Research Paper |
Deep learning–based cell composition analysis from tissue expression profiles
Menden, K.; Marouf, M.; Oller, S.; Dalmia, A.; Magruder, D. S.; Kloiber, K. & Heutink, P. et al. (2020)
Science Advances, 6(30) pp. eaba2619. DOI: https://doi.org/10.1126/sciadv.aba2619
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2020 | Journal Article | Research Paper
Increased expression of myelin-associated genes in frontal cortex of SNCA overexpressing rats and Parkinson’s disease patients
Hentrich, T.; Wassouf, Z.; Ehrhardt, C.; Haas, E.; Mills, J. D.; Aronica, E. & Outeiro, T. F. et al. (2020)
Aging, 12(19) pp. 18889-18906. DOI: https://doi.org/10.18632/aging.103935
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2020 | Journal Article | Research Paper |
A streamlined pipeline for multiplexed quantitative site-specific N-glycoproteomics
Fang, P.; Ji, Y.; Silbern, I.; Doebele, C. ; Ninov, M.; Lenz, C. & Oellerich, T. et al. (2020)
Nature Communications, 11(1). DOI: https://doi.org/10.1038/s41467-020-19052-w
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2020 | Journal Article | Research Paper |
SUMOylation controls the neurodevelopmental function of the transcription factor Zbtb20
Ripamonti, S.; Shomroni, O. ; Rhee, J. S. ; Chowdhury, K.; Jahn, O. ; Hellmann, K. P. & Bonn, S. et al. (2020)
Journal of Neurochemistry, 154(6) pp. 647-661. DOI: https://doi.org/10.1111/jnc.15008
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2020 | Journal Article | Research Paper |
Modeling the Shape of Synaptic Spines by Their Actin Dynamics
Bonilla-Quintana, M.; Wörgötter, F. ; Tetzlaff, C. & Fauth, M. (2020)
Frontiers in Synaptic Neuroscience, 12. DOI: https://doi.org/10.3389/fnsyn.2020.00009
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2020 | Journal Article | Overview
Light Microscopy of Mitochondria at the Nanoscale
Jakobs, S. ; Stephan, T. ; Ilgen, P. & Brüser, C. (2020)
Annual Review of Biophysics, 49(1) pp. 289-308. DOI: https://doi.org/10.1146/annurev-biophys-121219-081550
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2020 | Journal Article | Research Paper
An experimentally generated peptide database increases the sensitivity of XL-MS with complex samples
Parfentev, I.; Schilbach, S. ; Cramer, P. & Urlaub, H. (2020)
Journal of Proteomics, 220 pp. 103754. DOI: https://doi.org/10.1016/j.jprot.2020.103754
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2020 | Book Chapter
Mechanisms of alpha-synuclein toxicity: An update and outlook
Brás, I. C.; Xylaki, M.& Outeiro, T. F. (2020)
In: Recent Advances in Parkinson's Disease pp. 91-129. DOI: https://doi.org/10.1016/bs.pbr.2019.10.005
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2020 | Journal Article | Research Paper |
A nanobody-based fluorescent reporter reveals human α-synuclein in the cell cytosol
Gerdes, C.; Waal, N.; Offner, T.; Fornasiero, E. F. ; Wender, N.; Verbarg, H. & Manzini, I. et al. (2020)
Nature Communications, 11(1). DOI: https://doi.org/10.1038/s41467-020-16575-0
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2020 | Journal Article | Research Paper |
Realistic in silico generation and augmentation of single-cell RNA-seq data using generative adversarial networks
Marouf, M.; Machart, P.; Bansal, V.; Kilian, C.; Magruder, D. S.; Krebs, C. F. & Bonn, S. (2020)
Nature Communications, 11(1). DOI: https://doi.org/10.1038/s41467-019-14018-z
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2020 | Journal Article | Research Paper
Optimizing Nervous System-Specific Gene Targeting with Cre Driver Lines: Prevalence of Germline Recombination and Influencing Factors
Luo, L.; Ambrozkiewicz, M. C.; Benseler, F.; Chen, C.; Dumontier, E.; Falkner, S. & Furlanis, E. et al. (2020)
Neuron, 106(1) pp. 37-65.e5. DOI: https://doi.org/10.1016/j.neuron.2020.01.008
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2020 | Journal Article | Overview |
The Role of Alpha-Synuclein and Other Parkinson’s Genes in Neurodevelopmental and Neurodegenerative Disorders
Morato Torres, C. A.; Wassouf, Z.; Zafar, F.; Sastre, D.; Outeiro, T. F. & Schüle, B. (2020)
International Journal of Molecular Sciences, 21(16) pp. 5724. DOI: https://doi.org/10.3390/ijms21165724
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2020 | Journal Article | Overview |
From iPS Cells to Rodents and Nonhuman Primates: Filling Gaps in Modeling Parkinson's Disease
Outeiro, T. F. ; Heutink, P.; Bezard, E. & Cenci, A. M. (2020)
Movement Disorders,. DOI: https://doi.org/10.1002/mds.28387
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2020 | Journal Article | Research Paper |
Ultrastructural Imaging of Activity-Dependent Synaptic Membrane-Trafficking Events in Cultured Brain Slices
Imig, C.; López-Murcia, F. J.; Maus, L.; García-Plaza, I. H.; Mortensen, L. S.; Schwark, M. & Schwarze, V. et al. (2020)
Neuron, 108(5) pp. 843-860.e8. DOI: https://doi.org/10.1016/j.neuron.2020.09.004
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2020 | Journal Article | Research Paper |
Distinct Mechanisms of Over-Representation of Landmarks and Rewards in the Hippocampus
Sato, M.; Mizuta, K.; Islam, T.; Kawano, M.; Sekine, Y.; Takekawa, T. & Gomez-Dominguez, D. et al. (2020)
Cell Reports, 32(1) pp. 107864. DOI: https://doi.org/10.1016/j.celrep.2020.107864
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2020 | Journal Article | Research Paper
X1INH, an improved next-generation affinity-optimized hydrazonic ligand, attenuates abnormal copper( i )/copper( ii )-α-Syn interactions and affects protein aggregation in a cellular model of synucleinopathy
Cukierman, D. S.; Lázaro, D. F. ; Sacco, P.; Ferreira, P. R.; Diniz, R.; Fernández, C. O. & Outeiro, T. F. et al. (2020)
Dalton Transactions, 49(45) pp. 16252-16267. DOI: https://doi.org/10.1039/d0dt01138j
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2020 | Journal Article | Research Paper
Tipping the Scales: Peptide-Dependent Dysregulation of Neural Circuit Dynamics in Alzheimer’s Disease
Harris, S. S.; Wolf, F. ; De Strooper, B. & Busche, M. A. (2020)
Neuron, 107(3) pp. 417-435. DOI: https://doi.org/10.1016/j.neuron.2020.06.005
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2019 | Journal Article | Research Paper
Explainable Deep Learning for Augmentation of Small RNA Expression Profiles
Fiosina, J.; Fiosins, M. & Bonn, S. (2019)
Journal of Computational Biology, 27(2) pp. 234-247. DOI: https://doi.org/10.1089/cmb.2019.0320
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2019 | Journal Article | Research Paper
Correlative STED super-resolution light and electron microscopy on resin sections
Wurm, C. A. ; Schwarz, H.; Jans, D. C. ; Riedel, D. ; Humbel, B. M. & Jakobs, S. (2019)
Journal of Physics. D, Applied Physics, 52(37) pp. 374003. DOI: https://doi.org/10.1088/1361-6463/ab2b31
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2019 | Conference Paper
Deep Learning and Random Forest-Based Augmentation of sRNA Expression Profiles
Fiosina, J.; Fiosins, M. & Bonn, S. (2019)
In:Cai, Zhipeng; Skums, Pavel; Li, Min (Eds.), Bioinformatics Research and Applications pp. 159-170. 15th International Symposium, ISBRA 2019, Barcelona, Spain.
Springer. DOI: https://doi.org/10.1007/978-3-030-20242-2_14
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2019 | Preprint
Correlating Synaptic Ultrastructure and Function at the Nanoscale
Maus, L.; Altas, B.; Rhee, J.; Brose, N. ; Imig, C.& Cooper, B. H. (2019). DOI: https://doi.org/10.1101/588848
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2019 | Preprint
Deep-learning-based cell composition analysis from tissue expression profiles
Menden, K.; Marouf, M.; Oller, S.; Dalmia, A.; Kloiber, K.; Heutink, P.& Bonn, S. (2019). DOI: https://doi.org/10.1101/659227
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2019 | Preprint
The self-organized learning of noisy environmental stimuli requires distinct phases of plasticity
Krüppel, S.& Tetzlaff, C. (2019). DOI: https://doi.org/10.1101/612341
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2019 | Preprint
Explainable Deep Learning for Augmentation of sRNA Expression Profiles
Fiosina, J.; Fiosins, M.& Bonn, S. (2019)
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2019 | Preprint
Live-cell STED microscopy of mitochondrial cristae
Stephan, T.; Roesch, A.; Riedel, D.& Jakobs, S. (2019). DOI: https://doi.org/10.1101/640920
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2019 | Journal Article | Research Paper |
Fluorinated nanobodies for targeted molecular imaging of biological samples using nanoscale secondary ion mass spectrometry
Kabatas, S. ; Agüi-Gonzalez, P. ; Hinrichs, R. ; Jähne, S. ; Opazo, F. ; Diederichsen, U. & Rizzoli, S. O. et al. (2019)
Journal of Analytical Atomic Spectrometry, 34(6) pp. 1083-1087. DOI: https://doi.org/10.1039/C9JA00117D
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2019 | Journal Article | Overview |
SIMS imaging in neurobiology and cell biology
Agüi-Gonzalez, P. ; Jähne, S. & Phan, N. T. N. (2019)
Journal of Analytical Atomic Spectrometry, 34(7) pp. 1355-1368. DOI: https://doi.org/10.1039/C9JA00118B
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2019 | Journal Article | Research Paper |
Biasing the native α-synuclein conformational ensemble towards compact states abolishes aggregation and neurotoxicity
Carija, A.; Pinheiro, F.; Pujols, J.; Brás, I. C.; Lázaro, D. F.; Santambrogio, C. & Grandori, R. et al. (2019)
Redox Biology, 22 pp. 101135. DOI: https://doi.org/10.1016/j.redox.2019.101135
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2019 | Journal Article | Research Paper |
Nanomachinery Organizing Release at Neuronal and Ribbon Synapses
Wichmann, C. & Chakrabarti, R. (2019)
International Journal of Molecular Sciences, 20(9) art. 2147. DOI: https://doi.org/10.3390/ijms20092147
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2019 | Journal Article | Research Paper |
A combined miRNA–piRNA signature to detect Alzheimer’s disease
Jain, G.; Stuendl, A.; Rao, P.; Berulava, T.; Pena Centeno, T.; Kaurani, L. & Burkhardt, S. et al. (2019)
Translational Psychiatry, 9(1). DOI: https://doi.org/10.1038/s41398-019-0579-2
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2019 | Journal Article | Research Paper
A mass spectrometry workflow for measuring protein turnover rates in vivo
Alevra, M.; Mandad, S. ; Ischebeck, T. ; Urlaub, H. ; Rizzoli, S. O. & Fornasiero, E. F. (2019)
Nature Protocols, 14(12) pp. 3333-3365. DOI: https://doi.org/10.1038/s41596-019-0222-y
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2019 | Journal Article | Research Paper |
The Contribution of Iron to Protein Aggregation Disorders in the Central Nervous System
Joppe, K.; Roser, A.-E. ; Maass, F. & Lingor, P. (2019)
Frontiers in Neuroscience, 13 art. 15. DOI: https://doi.org/10.3389/fnins.2019.00015
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2019 | Journal Article | Overview |
Epigenetics of the Synapse in Neurodegeneration
Xylaki, M.; Atzler, B. & Outeiro, T. F. (2019)
Current Neurology and Neuroscience Reports, 19(10). DOI: https://doi.org/10.1007/s11910-019-0995-y
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2019 | Journal Article | Research Paper
Nuclear localization and phosphorylation modulate pathological effects of alpha-synuclein
Pinho, R.; Paiva, I.; Jercic, K. G.; Fonseca-Ornelas, L.; Gerhardt, E.; Fahlbusch, C. & Garcia-Esparcia, P. et al. (2019)
Human Molecular Genetics, 28(1) pp. 31-50. DOI: https://doi.org/10.1093/hmg/ddy326
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2019 | Journal Article | Research Paper
A 2A R‐induced transcriptional deregulation in astrocytes: An in vitro study
Paiva, I. ; Carvalho, K.; Santos, P.; Cellai, L.; Pavlou, M. A. S. ; Jain, G. & Gnad, T. et al. (2019)
Glia, 67(12) pp. 2329-2342. DOI: https://doi.org/10.1002/glia.23688
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2019 | Journal Article | Research Paper |
A practical guide to optimization in X10 expansion microscopy
Truckenbrodt, S.; Sommer, C.; Rizzoli, S. O. & Danzl, J. G. (2019)
Nature Protocols, 14(3) pp. 832-863. DOI: https://doi.org/10.1038/s41596-018-0117-3
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2019 | Journal Article | Research Paper
Seeding variability of different alpha synuclein strains in synucleinopathies
Candelise, N.; Schmitz, M.; Llorens, F.; Villar‐Piqué, A.; Cramm, M.; Thom, T. & Silva Correia, S. M. et al. (2019)
Annals of Neurology, 85(5) pp. 691-703. DOI: https://doi.org/10.1002/ana.25446
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2019 | Journal Article | Research Paper
Principles underlying the input-dependent formation and organization of memories
Herpich, J. & Tetzlaff, C. (2019)
Network Neuroscience, 3(2) pp. 606-634. DOI: https://doi.org/10.1162/netn_a_00086
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2019 | Journal Article | Research Paper |
Nanobodies reveal an extra-synaptic population of SNAP-25 and Syntaxin 1A in hippocampal neurons.
Maidorn, M.; Olichon, A.; Rizzoli, S. O. & Opazo, F. (2019)
mAbs, 11(2) pp. 305-321. DOI: https://doi.org/10.1080/19420862.2018.1551675
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2019 | Journal Article | Research Paper |
Live-cell STED nanoscopy of mitochondrial cristae
Stephan, T. ; Roesch, A.; Riedel, D. & Jakobs, S. (2019)
Scientific Reports, 9(1). DOI: https://doi.org/10.1038/s41598-019-48838-2
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2019 | Journal Article | Overview
In vitro models of synucleinopathies: informing on molecular mechanisms and protective strategies
Marvian, A. T.; Koss, D. J.; Aliakbari, F.; Morshedi, D. & Outeiro, T. F. (2019)
Journal of Neurochemistry, 150(5) pp. 535-565. DOI: https://doi.org/10.1111/jnc.14707
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2019 | Journal Article | Overview
LRRK2, alpha-synuclein, and tau: partners in crime or unfortunate bystanders?
Outeiro, T. F. ; Harvey, K.; Dominguez-Meijide, A. & Gerhardt, E. (2019)
Biochemical Society Transactions, 47(3) pp. 827-838. DOI: https://doi.org/10.1042/BST20180466
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2019 | Journal Article | Research Paper
Synuclein Meeting 2019: where we are and where we need to go
Outeiro, T. F. & Mestre, T. A. (2019)
Journal of Neurochemistry, 150(5) pp. 462-466. DOI: https://doi.org/10.1111/jnc.14825
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2019 | Journal Article | Research Paper |
Tagger-A Swiss army knife for multiomics to dissect cell type-specific mechanisms of gene expression in mice
Kaczmarczyk, L.; Bansal, V.; Rajput, A.; Rahman, R.-U.; Krzyżak, W.; Degen, J. & Poll, S. et al. (2019)
PLoS Biology, 17(8) art. e3000374. DOI: https://doi.org/10.1371/journal.pbio.3000374
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2019 | Journal Article | Research Paper |
Cytosolic Trapping of a Mitochondrial Heat Shock Protein Is an Early Pathological Event in Synucleinopathies
Szegő, É. M.; Dominguez-Meijide, A.; Gerhardt, E.; König, A.; Koss, D. J.; Li, W. & Pinho, R. et al. (2019)
Cell Reports, 28(1) pp. 65.e6-77.e6. DOI: https://doi.org/10.1016/j.celrep.2019.06.009
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2019 | Journal Article | Research Paper |
A Theoretical Framework to Derive Simple, Firing-Rate-Dependent Mathematical Models of Synaptic Plasticity
Lappalainen, J.; Herpich, J. & Tetzlaff, C. (2019)
Frontiers in Computational Neuroscience, 13 art. 26. DOI: https://doi.org/10.3389/fncom.2019.00026
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2019 | Journal Article | Overview
Are genetic and idiopathic forms of Parkinson's disease the same disease?
Correia Guedes, L.; Mestre, T.; Outeiro, T. F. & Ferreira, J. J. (2019)
Journal of Neurochemistry, 152(5) pp. 515-522. DOI: https://doi.org/10.1111/jnc.14902
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2019 | Journal Article | Overview
The role of LRRK2 in cell signalling
Harvey, K. & Outeiro, T. F. (2019)
Biochemical Society Transactions, 47(1) pp. 197-207. DOI: https://doi.org/10.1042/BST20180464
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2019 | Journal Article | Research Paper |
Neuronal Redox-Imbalance in Rett Syndrome Affects Mitochondria as Well as Cytosol, and Is Accompanied by Intensified Mitochondrial O2 Consumption and ROS Release
Can, K.; Menzfeld, C.; Rinne, L.; Rehling, P. ; Kügler, S.; Golubiani, G. & Dudek, J. et al. (2019)
Frontiers in Physiology, 10 art. 479. DOI: https://doi.org/10.3389/fphys.2019.00479
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2019 | Journal Article | Research Paper |
The long noncoding RNA neuroLNC regulates presynaptic activity by interacting with the neurodegeneration-associated protein TDP-43
Keihani, S.; Kluever, V.; Mandad, S. ; Bansal, V.; Rahman, R. ; Fritsch, E. & Gomes, L. C. et al. (2019)
Science Advances, 5(12) pp. eaay2670. DOI: https://doi.org/10.1126/sciadv.aay2670
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2019 | Journal Article | Overview
Investigating targets for neuropharmacological intervention by molecular dynamics simulations
Rossetti, G.; Kless, A.; Lai, L.; Outeiro, T. F. & Carloni, P. (2019)
Biochemical Society Transactions, 47(3) pp. 909-918. DOI: https://doi.org/10.1042/BST20190048
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2019 | Journal Article | Research Paper
Translocator Protein Ligand Protects against Neurodegeneration in the MPTP Mouse Model of Parkinsonism
Gong, J.; Szego, É. M. ; Leonov, A. ; Benito, E. ; Becker, S. ; Fischer, A. & Zweckstetter, M. et al. (2019)
The Journal of Neuroscience, 39(19) pp. 3752-3769. DOI: https://doi.org/10.1523/JNEUROSCI.2070-18.2019
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2019 | Journal Article | Research Paper |
Boron-Containing Probes for Non-optical High-Resolution Imaging of Biological Samples
Kabatas, S.; Agüi-Gonzalez, P.; Saal, K.-A.; Jähne, S.; Opazo, F.; Rizzoli, S. O. & Phan, N. T. N. (2019)
Angewandte Chemie (International ed. in English), 58(11) pp. 3438-3443. DOI: https://doi.org/10.1002/anie.201812032
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2019 | Journal Article | Overview |
Interrogating Synaptic Architecture: Approaches for Labeling Organelles and Cytoskeleton Components
Reshetniak, S. & Rizzoli, S. O. (2019)
Frontiers in Synaptic Neuroscience, 11. DOI: https://doi.org/10.3389/fnsyn.2019.00023
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2018 | Journal Article | Research Paper
Kollaboratives Forschungszentrum (Sonderforschungsbereich, SFB) 1286 „Quantitative Synaptologie“
Schubert, K. & Rizzoli, S. O. (2018)
Neuroforum, 24(2) pp. 135-140. DOI: https://doi.org/10.1515/nf-2017-0056
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2018 | Journal Article | Research Paper |
WDR1 is a novel EYA3 substrate and its dephosphorylation induces modifications of the cellular actin cytoskeleton
Mentel, M.; Ionescu, A. E.; Puscalau-Girtu, I.; Helm, M. S.; Badea, R. A.; Rizzoli, S. O. & Szedlacsek, S. E. (2018)
Scientific Reports, 8(1) art. 2910. DOI: https://doi.org/10.1038/s41598-018-21155-w
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2018 | Journal Article | Overview |
Circulating miRNAs as Diagnostic Biomarkers for Parkinson’s Disease
Roser, A.-E. ; Caldi Gomes, L.; Schünemann, J.; Maass, F. & Lingor, P. (2018)
Frontiers in Neuroscience, 12 art. 625. DOI: https://doi.org/10.3389/fnins.2018.00625
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2018 | Journal Article | Research Paper |
Newly produced synaptic vesicle proteins are preferentially used in synaptic transmission
Truckenbrodt, S.; Viplav, A.; Jähne, S. ; Vogts, A.; Denker, A.; Wildhagen, H. & Fornasiero, E. F et al. (2018)
The EMBO Journal, 37(15). DOI: https://doi.org/10.15252/embj.201798044
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2018 | Journal Article | Research Paper |
Robust nanoscopy of a synaptic protein in living mice by organic-fluorophore labeling
Masch, J.-M.; Steffens, H. ; Fischer, J.; Engelhardt, J.; Hubrich, J.; Keller-Findeisen, J. & D'Este, E. et al. (2018)
Proceedings of the National Academy of Sciences of the United States of America, 115(34) pp. E8047-E8056. DOI: https://doi.org/10.1073/pnas.1807104115
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2018 | Journal Article | Research Paper
Alpha-synuclein deregulates the expression of COL4A2 and impairs ER-Golgi function
Paiva, I. ; Jain, G.; Lázaro, D. F. ; Jerčić, K. G.; Hentrich, T.; Kerimoglu, C. & Pinho, R. et al. (2018)
Neurobiology of Disease, 119 pp. 121-135. DOI: https://doi.org/10.1016/j.nbd.2018.08.001
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2018 | Journal Article | Research Paper |
Membrane binding, internalization, and sorting of alpha-synuclein in the cell
Masaracchia, C.; Hnida, M.; Gerhardt, E.; Lopes da Fonseca, T.; Villar-Pique, A.; Branco, T. & Stahlberg, M. A. et al. (2018)
Acta Neuropathologica Communications, 6(1) art. 79. DOI: https://doi.org/10.1186/s40478-018-0578-1
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2018 | Journal Article | Research Paper |
SUMO1-conjugation is altered during normal aging but not by increased amyloid burden
Stankova, T.; Piepkorn, L.; Bayer, T. A. ; Jahn, O. & Tirard, M. (2018)
Aging Cell, 17(4) pp. e12760. DOI: https://doi.org/10.1111/acel.12760
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2018 | Journal Article | Research Paper |
X10 expansion microscopy enables 25-nm resolution on conventional microscopes
Truckenbrodt, S.; Maidorn, M.; Crzan, D.; Wildhagen, H.; Kabatas, S. & Rizzoli, S. O. (2018)
EMBO Reports, 19(9) art. e45836. DOI: https://doi.org/10.15252/embr.201845836
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2018 | Journal Article | Research Paper
Sensing α-Synuclein From the Outside via the Prion Protein: Implications for Neurodegeneration
Brás, I. C.; Lopes, L. V. & Outeiro, T. F. (2018)
Movement Disorders, 33(11) pp. 1675-1684. DOI: https://doi.org/10.1002/mds.27478
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2018 | Journal Article | Research Paper
Small molecule inhibits α-synuclein aggregation, disrupts amyloid fibrils, and prevents degeneration of dopaminergic neurons
Pujols, J.; Peña-Díaz, S.; Lázaro, D. F. ; Peccati, F.; Pinheiro, F.; González, D. & Carija, A. et al. (2018)
Proceedings of the National Academy of Sciences, 115(41) pp. 10481-10486. DOI: https://doi.org/10.1073/pnas.1804198115
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2018 | Journal Article | Research Paper |
Combined Use of Unnatural Amino Acids Enables Dual Color Super-Resolution Imaging of Proteins via Click Chemistry
Saal, K.-A.; Richter, F.; Rehling, P. & Rizzoli, S. O. (2018)
ACS Nano, 2018(12) pp. 12247-12254. DOI: https://doi.org/10.1021/acsnano.8b06047
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2018 | Journal Article | Research Paper |
Precisely measured protein lifetimes in the mouse brain reveal differences across tissues and subcellular fractions.
Fornasiero, E. F.; Mandad, S.; Wildhagen, H.; Alevra, M.; Rammner, B.; Keihani, S. & Opazo, F. et al. (2018)
Nature Communications, 9(1) art. 4230. DOI: https://doi.org/10.1038/s41467-018-06519-0
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2017 | Journal Article | Research Paper |
RIM-Binding Protein 2 Promotes a Large Number of CaV1.3 Ca2+-Channels and Contributes to Fast Synaptic Vesicle Replenishment at Hair Cell Active Zones
Krinner, S. ; Butola, T. ; Jung, S. ; Wichmann, C. & Moser, T. (2017)
Frontiers in Cellular Neuroscience, 11 art. 334. DOI: https://doi.org/10.3389/fncel.2017.00334
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2017 | Journal Article | Research Paper |
Piccolo Promotes Vesicle Replenishment at a Fast Central Auditory Synapse
Butola, T. ; Wichmann, C. & Moser, T. (2017)
Frontiers in synaptic neuroscience, 9 art. 14. DOI: https://doi.org/10.3389/fnsyn.2017.00014
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