RG Rizzoli (Quantitative Synaptology in Space and Time)

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  • 2024 | Journal Article
    ​ ​Kumar, Nisha Hemandhar, et al. "Comprehensive transcriptome analysis reveals altered mRNA splicing and post-transcriptional changes in the aged mouse brain​." ​Nucleic Acids Research, ​2024, , ​doi: 10.1093/nar/gkae172. 
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  • 2024 | Journal Article
    ​ ​Lork, Alicia A., et al. "Subcellular protein turnover in human neural progenitor cells revealed by correlative electron microscopy and nanoscale secondary ion mass spectrometry imaging​." ​Chemical Science, vol. 15, no. 9, ​2024, pp. 3311​-3322​, ​doi: 10.1039/D3SC05629E. 
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  • 2024 | Preprint
    ​ ​Mougios, Nikolaos, et al. "NanoPlex: a universal strategy for fluorescence microscopy multiplexing using nanobodies with erasable signals​." ​​2024. ​https://mbexc.uni-goettingen.de/literature/publications/924 https://sfb1286.uni-goettingen.de/literature/publications/254. doi: 10.1101/2024.03.18.585511. 
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  • 2023 | Journal Article
    ​ ​Mougios, Nikolaos, et al. "Trafficking proteins show limited differences in mobility across different postsynaptic spines​." ​iScience, vol. 26, no. 2, ​2023, , ​doi: 10.1016/j.isci.2023.105971. 
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  • 2023 | Preprint
    ​ ​Michanski, Susann, et al. "Age-dependent structural reorganization of utricular ribbon synapses​." ​​2023. ​https://mbexc.uni-goettingen.de/literature/publications/648 https://sfb1286.uni-goettingen.de/literature/publications/191 https://for2848.gwdguser.de/literature/publications/39. doi: 10.1101/2022.12.19.521049. 
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  • 2023 | Preprint
    ​ ​Radmacher, Niels, et al. "Doubling the resolution of single-molecule localization microscopy with image scanning microscopy​." ​​2023. ​https://mbexc.uni-goettingen.de/literature/publications/754. doi: 10.1101/2023.08.23.554438. 
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  • 2023 | Journal Article
    ​ ​Roeder, Sebastian S., et al. "Tracking cell turnover in human brain using 15N-thymidine imaging mass spectrometry​." ​Frontiers in Neuroscience, vol. 17, ​2023, , ​doi: 10.3389/fnins.2023.1274607. 
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  • 2023 | Journal Article
    ​ ​de Jong-Bolm, Daniëlle, et al. "Protein nanobarcodes enable single-step multiplexed fluorescence imaging​." ​PLOS Biology, vol. 21, no. 12, ​2023, , ​doi: 10.1371/journal.pbio.3002427. 
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  • 2023 | Journal Article
    ​ ​Warth Perez Arias, Carmina C., et al. "Proteomic analysis of the human hippocampus identifies neuronal pentraxin 1 ( NPTX1 ) as synapto‐axonal target in late‐stage Parkinson's disease​." ​Journal of Neurochemistry, vol. 166, no. 5, ​2023, pp. 862​-874​, ​doi: 10.1111/jnc.15924. 
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  • 2023 | Journal Article
    ​ ​Bonnin, Elisa A., et al. "High-resolution analysis of bound Ca 2+ in neurons and synapses​." ​Life Science Alliance, vol. 7, no. 1, ​2023, , ​doi: 10.26508/lsa.202302030. 
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  • 2023 | Journal Article
    ​ ​Hoffmann, Christian, et al. "Synapsin condensation controls synaptic vesicle sequestering and dynamics​." ​Nature Communications, vol. 14, no. 1, ​2023, , ​doi: 10.1038/s41467-023-42372-6. 
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  • 2023 | Journal Article | Overview
    ​ ​Georgiev, Svilen, and Silvio Rizzoli. "The long-loop recycling (LLR) of synaptic components as a question of economics​." ​Molecular and Cellular Neuroscience, ​2023, , ​doi: 10.1016/j.mcn.2023.103862. 
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  • 2023 | Journal Article
    ​ ​Michanski, Susann, et al. "Age-dependent structural reorganization of utricular ribbon synapses​." ​Frontiers in Cell and Developmental Biology, vol. 11, ​2023, , ​doi: 10.3389/fcell.2023.1178992. 
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  • 2022 | Journal Article | Overview | 
    ​ ​Dankovich, Tal M., and Silvio O. Rizzoli. "Extracellular Matrix Recycling as a Novel Plasticity Mechanism With a Potential Role in Disease​." ​Frontiers in Cellular Neuroscience, vol. 16, ​2022, , ​doi: 10.3389/fncel.2022.854897. 
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  • 2022 | Journal Article | Overview | 
    ​ ​Dankovich, Tal M., and Silvio O. Rizzoli. "The Synaptic Extracellular Matrix: Long-Lived, Stable, and Still Remarkably Dynamic​." ​Frontiers in Synaptic Neuroscience, vol. 14, ​2022, , ​doi: 10.3389/fnsyn.2022.854956. 
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  • 2022 | Preprint
    ​ ​Shaib, Ali H., et al. "Expansion microscopy at one nanometer resolution​." ​​2022. ​https://mbexc.uni-goettingen.de/literature/publications/583. doi: 10.1101/2022.08.03.502284. 
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  • 2022 | Journal Article | Research Paper | 
    ​ ​Kabatas Glowacki, Selda, et al. "An iodine-containing probe as a tool for molecular detection in secondary ion mass spectrometry​." ​Chemical Communications, ​2022, , ​doi: 10.1039/D2CC02290G. 
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  • 2022 | Journal Article | Research Paper | 
    ​ ​Meschkat, Martin, et al. "White matter integrity in mice requires continuous myelin synthesis at the inner tongue​." ​Nature Communications, vol. 13, no. 1, ​2022, , ​doi: 10.1038/s41467-022-28720-y. 
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  • 2022 | Journal Article | Research Paper | 
    ​ ​Li, Fengxia, et al. "A Reliable Approach for Revealing Molecular Targets in Secondary Ion Mass Spectrometry​." ​International Journal of Molecular Sciences, vol. 23, no. 9, ​2022, p. 4615​, ​doi: 10.3390/ijms23094615. 
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  • 2022 | Journal Article | 
    ​ ​Stejerean-Todoran, Ioana, et al. "A distinct pattern of growth and RAC1 signaling in melanoma brain metastasis cells​." ​Neuro-Oncology, ​2022, , ​doi: 10.1093/neuonc/noac212. 
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  • 2022 | Journal Article | 
    ​ ​Katsenelson, Maxim, et al. "IGF-1 receptor regulates upward firing rate homeostasis via the mitochondrial calcium uniporter​." ​Proceedings of the National Academy of Sciences, vol. 119, no. 33, ​2022, , ​doi: 10.1073/pnas.2121040119. 
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  • 2021 | Journal Article | Research Paper | 
    ​ ​Sertel, Sinem M., et al. "Differences in synaptic vesicle pool behavior between male and female hippocampal cultured neurons​." ​Scientific Reports, vol. 11, no. 1, ​2021, , ​doi: 10.1038/s41598-021-96846-y. 
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  • 2021 | Journal Article | Research Paper | 
    ​ ​Bonnin, Elisa A., et al. "NanoSIMS observations of mouse retinal cells reveal strict metabolic controls on nitrogen turnover​." ​BMC Molecular and Cell Biology, vol. 22, no. 1, ​2021, , ​doi: 10.1186/s12860-020-00339-1. 
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  • 2021 | Preprint
    ​ ​Weish, Patrick, et al. "Super-resolution microscopy informs on the molecular architecture of alpha-synuclein inclusions in model systems and in the human brain​." ​​2021. ​https://mbexc.uni-goettingen.de/literature/publications/295 https://sfb1286.uni-goettingen.de/literature/publications/122. doi: 10.1101/2021.04.25.441304. 
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  • 2021 | Preprint
    ​ ​Agüi-Gonzalez, Paola, et al. "Gold-conjugated Nanobodies for Targeted Imaging using High-resolution Secondary Ion Mass Spectrometry​." ​​2021. ​https://sfb1286.uni-goettingen.de/literature/publications/120. doi: 10.20944/preprints202105.0687.v1. 
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  • 2021 | Preprint
    ​ ​Katsenelson, Maxim, et al. "IGF1 Receptor Regulates Upward Firing Rate Homeostasis via the Mitochondrial Calcium Uniporter​." ​​2021. ​https://mbexc.uni-goettingen.de/literature/publications/533. doi: 10.1101/2021.12.11.469196. 
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  • 2021 | Journal Article | Research Paper | 
    ​ ​Wang, Huan, et al. "Surface tension and viscosity of protein condensates quantified by micropipette aspiration​." ​Biophysical Reports, vol. 1, no. 1, ​2021, , ​doi: 10.1016/j.bpr.2021.100011. 
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  • 2021 | Journal Article | Research Paper
    ​ ​Helm, Martin S., et al. "A large-scale nanoscopy and biochemistry analysis of postsynaptic dendritic spines​." ​Nature Neuroscience, vol. 24, no. 8, ​2021, pp. 1151​-1162​, ​doi: 10.1038/s41593-021-00874-w. 
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  • 2021 | Journal Article | Research Paper | 
    ​ ​Yousefi, Roya, et al. "Monitoring mitochondrial translation in living cells​." ​EMBO reports, vol. 22, no. 4, ​2021, , ​doi: 10.15252/embr.202051635. 
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  • 2021 | Journal Article | Research Paper | 
    ​ ​Jähne, Sebastian, et al. "Presynaptic activity and protein turnover are correlated at the single-synapse level​." ​Cell Reports, vol. 34, no. 11, ​2021, p. 108841​, ​doi: 10.1016/j.celrep.2021.108841. 
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  • 2021 | Journal Article | Research Paper | 
    ​ ​Silbern, Ivan, et al. "Protein Phosphorylation in Depolarized Synaptosomes: Dissecting Primary Effects of Calcium from Synaptic Vesicle Cycling​." ​Molecular & Cellular Proteomics, vol. 20, ​2021, p. 100061​, ​doi: 10.1016/j.mcpro.2021.100061. 
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  • 2021 | Journal Article | Research Paper
    ​ ​Kluever, Verena, and Eugenio F. Fornasiero. "Principles of brain aging: Status and challenges of modeling human molecular changes in mice​." ​Ageing Research Reviews, vol. 72, ​2021, p. 101465​, ​doi: 10.1016/j.arr.2021.101465. 
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  • 2021 | Journal Article | Research Paper | 
    ​ ​Dankovich, Tal M., et al. "Extracellular matrix remodeling through endocytosis and resurfacing of Tenascin-R​." ​Nature Communications, vol. 12, no. 1, ​2021, , ​doi: 10.1038/s41467-021-27462-7. 
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  • 2021 | Journal Article | Research Paper | 
    ​ ​Agüi-Gonzalez, Paola, et al. "Secondary Ion Mass Spectrometry Imaging Reveals Changes in the Lipid Structure of the Plasma Membranes of Hippocampal Neurons following Drugs Affecting Neuronal Activity​." ​ACS Chemical Neuroscience, vol. 12, no. 9, ​2021, pp. 1542​-1551​, ​doi: 10.1021/acschemneuro.1c00031. 
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  • 2021 | Journal Article | Overview | 
    ​ ​Reshetniak, Sofiia, and Silvio O. Rizzoli. "The vesicle cluster as a major organizer of synaptic composition in the short-term and long-term​." ​Current Opinion in Cell Biology, vol. 71, ​2021, pp. 63​-68​, ​doi: 10.1016/j.ceb.2021.02.007. 
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  • 2021 | Journal Article | 
    ​ ​Agüi-Gonzalez, Paola, et al. "Gold-Conjugated Nanobodies for Targeted Imaging Using High-Resolution Secondary Ion Mass Spectrometry​." ​Nanomaterials, vol. 11, no. 7, ​2021, p. 1797​, ​doi: 10.3390/nano11071797. 
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  • 2021 | Journal Article | Overview | 
    ​ ​Dankovich, Tal M., and Silvio O. Rizzoli. "Challenges facing quantitative large-scale optical super-resolution, and some simple solutions​." ​iScience, vol. 24, no. 3, ​2021, p. 102134​, ​doi: 10.1016/j.isci.2021.102134. 
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  • 2021 | Journal Article | Research Paper | 
    ​ ​Saal, Kim Ann, et al. "Rho‐kinase inhibition by fasudil modulates pre‐synaptic vesicle dynamics​." ​Journal of Neurochemistry, ​2021, pp. n/a​-n/a​, ​doi: 10.1111/jnc.15274. 
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  • 2021 | Journal Article | Research Paper
    ​ ​Sertel, Sinem M., Malena S. von Elling-Tammen, and Silvio O. Rizzoli. "The mRNA-Binding Protein RBM3 Regulates Activity Patterns and Local Synaptic Translation in Cultured Hippocampal Neurons​." ​The Journal of Neuroscience, vol. 41, no. 6, ​2021, pp. 1157​-1173​, ​doi: 10.1523/JNEUROSCI.0921-20.2020. 
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  • 2020 | Journal Article | Research Paper | 
    ​ ​Perego, Eleonora, et al. "A minimalist model to measure interactions between proteins and synaptic vesicles​." ​Scientific Reports, vol. 10, no. 1, ​2020, , ​doi: 10.1038/s41598-020-77887-1. 
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  • 2020 | Journal Article | Research Paper | 
    ​ ​Reshetniak, Sofiia, et al. "A comparative analysis of the mobility of 45 proteins in the synaptic bouton​." ​The EMBO Journal, vol. 39, no. 16, ​2020, , ​doi: 10.15252/embj.2020104596. 
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  • 2020 | Preprint
    ​ ​Yousefi, Roya, et al. "Local translation in synaptic mitochondria influences synaptic transmission​." ​​2020. ​https://mbexc.uni-goettingen.de/literature/publications/168 https://sfb1002.med.uni-goettingen.de/production/literature/publications/382 https://sfb1286.uni-goettingen.de/literature/publications/93. doi: 10.1101/2020.07.22.215194. 
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  • 2020 | Preprint
    ​ ​Dankovich, Tal M., et al. "Extracellular matrix remodeling through endocytosis and resurfacing of Tenascin-R​." ​​2020. ​https://mbexc.uni-goettingen.de/literature/publications/142 https://sfb1190.med.uni-goettingen.de/production/literature/publications/138 https://sfb1286.uni-goettingen.de/literature/publications/101. doi: 10.1101/2020.11.11.377515. 
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  • 2020 | Journal Article | Erratum | 
    ​ ​Sograte-Idrissi, Shama, et al. "Correction: Circumvention of common labelling artefacts using secondary nanobodies​." ​Nanoscale, vol. 12, no. 48, ​2020, pp. 24543​-24543​, ​doi: 10.1039/d0nr90279a. 
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  • 2020 | Journal Article | Research Paper | 
    ​ ​Gürth, Clara-Marie, et al. "Synaptic activity and strength are reflected by changes in the post-synaptic secretory pathway​." ​Scientific Reports, vol. 10, no. 1, ​2020, , ​doi: 10.1038/s41598-020-77260-2. 
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  • 2020 | Journal Article | Research Paper | 
    ​ ​Reshetniak, Sofiia, et al. "Quantitative Synaptic Biology: A Perspective on Techniques, Numbers and Expectations​." ​International Journal of Molecular Sciences, vol. 21, no. 19, ​2020, p. 7298​, ​doi: 10.3390/ijms21197298. 
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  • 2020 | Journal Article | Research Paper | 
    ​ ​Sograte-Idrissi, Shama, et al. "Circumvention of common labelling artefacts using secondary nanobodies​." ​Nanoscale, vol. 12, no. 18, ​2020, pp. 10226​-10239​, ​doi: 10.1039/d0nr00227e. 
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  • 2020 | Journal Article | Overview | 
    ​ ​Bonnin, Elisa A., and Silvio O. Rizzoli. "Novel Secondary Ion Mass Spectrometry Methods for the Examination of Metabolic Effects at the Cellular and Subcellular Levels​." ​Frontiers in Behavioral Neuroscience, vol. 14, ​2020, , ​doi: 10.3389/fnbeh.2020.00124. 
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  • 2020 | Journal Article | Research Paper | 
    ​ ​Maus, Lydia, et al. "Ultrastructural Correlates of Presynaptic Functional Heterogeneity in Hippocampal Synapses​." ​Cell Reports, vol. 30, no. 11, ​2020, pp. 3632​-3643.e8​, ​doi: 10.1016/j.celrep.2020.02.083. 
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  • 2020 | Journal Article | Research Paper | 
    ​ ​Gerdes, Christoph, et al. "A nanobody-based fluorescent reporter reveals human α-synuclein in the cell cytosol​." ​Nature Communications, vol. 11, no. 1, ​2020, , ​doi: 10.1038/s41467-020-16575-0. 
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  • 2019 | Journal Article | Research Paper | 
    ​ ​Callegari, Sylvie, et al. "A MICOS-TIM22 Association Promotes Carrier Import into Human Mitochondria​." ​Journal of Molecular Biology, vol. 431, no. 15, ​2019, pp. 2835​-2851​, ​doi: 10.1016/j.jmb.2019.05.015. 
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  • 2019 | Preprint
    ​ ​Sograte-Idrissi, Shama, et al. "Circumvention of common labeling artifacts using secondary nanobodies​." ​​2019. ​https://mbexc.uni-goettingen.de/literature/publications/17. doi: 10.1101/818351. 
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  • 2019 | Journal Article | Research Paper | 
    ​ ​Kabatas, Selda, et al. "Fluorinated nanobodies for targeted molecular imaging of biological samples using nanoscale secondary ion mass spectrometry​." ​Journal of Analytical Atomic Spectrometry, vol. 34, no. 6, ​2019, pp. 1083​-1087​, ​doi: 10.1039/C9JA00117D. 
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  • 2019 | Journal Article | Research Paper | 
    ​ ​Richter, Katharina N., et al. "Antibody-driven capture of synaptic vesicle proteins on the plasma membrane enables the analysis of their interactions with other synaptic proteins​." ​Scientific Reports, vol. 9, no. 1, ​2019, , ​doi: 10.1038/s41598-019-45729-4. 
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  • 2019 | Journal Article | Research Paper
    ​ ​Alevra, Mihai, et al. "A mass spectrometry workflow for measuring protein turnover rates in vivo​." ​Nature Protocols, vol. 14, no. 12, ​2019, pp. 3333​-3365​, ​doi: 10.1038/s41596-019-0222-y. 
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  • 2019 | Journal Article | Research Paper | 
    ​ ​Truckenbrodt, Sven, et al. "A practical guide to optimization in X10 expansion microscopy​." ​Nature Protocols, vol. 14, no. 3, ​2019, pp. 832​-863​, ​doi: 10.1038/s41596-018-0117-3. 
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  • 2019 | Journal Article | Research Paper | 
    ​ ​Maidorn, Manuel, et al. "Nanobodies reveal an extra-synaptic population of SNAP-25 and Syntaxin 1A in hippocampal neurons.​." ​mAbs, vol. 11, no. 2, ​2019, pp. 305​-321​, ​doi: 10.1080/19420862.2018.1551675. 
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  • 2019 | Journal Article | Research Paper | 
    ​ ​Seitz, Katharina J., and Silvio O. Rizzoli. "GFP nanobodies reveal recently-exocytosed pHluorin molecules​." ​Scientific Reports, vol. 9, no. 1, ​2019, , ​doi: 10.1038/s41598-019-44262-8. 
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  • 2019 | Journal Article | Research Paper | 
    ​ ​Szegő, Éva M., et al. "Cytosolic Trapping of a Mitochondrial Heat Shock Protein Is an Early Pathological Event in Synucleinopathies​." ​Cell Reports, vol. 28, no. 1, ​2019, pp. 65.e6​-77.e6​, ​doi: 10.1016/j.celrep.2019.06.009. 
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  • 2019 | Journal Article | Research Paper | 
    ​ ​Keihani, S., et al. "The long noncoding RNA neuroLNC regulates presynaptic activity by interacting with the neurodegeneration-associated protein TDP-43​." ​Science Advances, vol. 5, no. 12, ​2019, p. eaay2670​, ​doi: 10.1126/sciadv.aay2670. 
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  • 2019 | Journal Article | Research Paper | 
    ​ ​Kabatas, Selda, et al. "Boron-Containing Probes for Non-optical High-Resolution Imaging of Biological Samples​." ​Angewandte Chemie (International ed. in English), vol. 58, no. 11, ​2019, pp. 3438​-3443​, ​doi: 10.1002/anie.201812032. 
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  • 2019 | Journal Article | Overview | 
    ​ ​Reshetniak, Sofiia, and Silvio O. Rizzoli. "Interrogating Synaptic Architecture: Approaches for Labeling Organelles and Cytoskeleton Components​." ​Frontiers in Synaptic Neuroscience, vol. 11, ​2019, , ​doi: 10.3389/fnsyn.2019.00023. 
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  • 2018 | Journal Article | Research Paper
    ​ ​Schubert, Konstantin, and Silvio O. Rizzoli. "Kollaboratives Forschungszentrum (Sonderforschungsbereich, SFB) 1286 „Quantitative Synaptologie“​." ​Neuroforum, vol. 24, no. 2, ​2018, pp. 135​-140​, ​doi: 10.1515/nf-2017-0056. 
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  • 2018 | Journal Article | Research Paper | 
    ​ ​Mentel, Mihaela, et al. "WDR1 is a novel EYA3 substrate and its dephosphorylation induces modifications of the cellular actin cytoskeleton​." ​Scientific Reports, vol. 8, no. 1, ​2018, , ​doi: 10.1038/s41598-018-21155-w. 
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  • 2018 | Journal Article | Research Paper | 
    ​ ​Richter, Katharina N., et al. "Comparative synaptosome imaging: a semi-quantitative method to obtain copy numbers for synaptic and neuronal proteins​." ​Scientific Reports, vol. 8, no. 1, ​2018, , ​doi: 10.1038/s41598-018-33130-6. 
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  • 2018 | Journal Article | Research Paper | 
    ​ ​Truckenbrodt, Sven, et al. "Newly produced synaptic vesicle proteins are preferentially used in synaptic transmission​." ​The EMBO Journal, vol. 37, no. 15, ​2018, , ​doi: 10.15252/embj.201798044. 
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  • 2018 | Journal Article | Research Paper | 
    ​ ​Mandad, Sunit, et al. "The codon sequences predict protein lifetimes and other parameters of the protein life cycle in the mouse brain​." ​Scientific Reports, vol. 8, no. 1, ​2018, , ​doi: 10.1038/s41598-018-35277-8. 
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  • 2018 | Journal Article | Research Paper | 
    ​ ​Richter, Katharina N., et al. "Glyoxal as an alternative fixative to formaldehyde in immunostaining and super-resolution microscopy​." ​The EMBO journal, vol. 37, no. 1, ​2018, pp. 139​-159​, ​doi: 10.15252/embj.201695709. 
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  • 2018 | Journal Article | Research Paper | 
    ​ ​Truckenbrodt, Sven, et al. "X10 expansion microscopy enables 25-nm resolution on conventional microscopes​." ​EMBO Reports, vol. 19, no. 9, ​2018, , ​doi: 10.15252/embr.201845836. 
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  • 2018 | Journal Article | Research Paper | 
    ​ ​Saal, Kim-A., et al. "Combined Use of Unnatural Amino Acids Enables Dual Color Super-Resolution Imaging of Proteins via Click Chemistry​." ​ACS Nano, vol. 2018, no. 12, ​2018, pp. 12247​-12254​, ​doi: 10.1021/acsnano.8b06047. 
    ​Details  DOI  PMID  PMC 
  • 2018 | Journal Article | Research Paper | 
    ​ ​Fornasiero, Eugenio F., et al. "Precisely measured protein lifetimes in the mouse brain reveal differences across tissues and subcellular fractions.​." ​Nature Communications, vol. 9, no. 1, ​2018, , ​doi: 10.1038/s41467-018-06519-0. 
    ​Details  DOI  PMID  PMC 

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