RG Bonn

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  • 2023 | Journal Article | 
    ​ ​Kylies, Dominik, Marina Zimmermann, Fabian Haas, Maria Schwerk, Malte Kuehl, Michael Brehler, Jan Czogalla et al. "Expansion-enhanced super-resolution radial fluctuations enable nanoscale molecular profiling of pathology specimens​." ​Nature Nanotechnology (2023): . ​https://doi.org/10.1038/s41565-023-01328-z.
    ​Details  DOI  PMID  PMC 
  • 2023 | Journal Article
    ​ ​Warth Perez Arias, Carmina C., Ivan Silbern, Lucas Caldi Gomes, Hannes Wartmann, Vivian Dambeck, Jonas Fanz, Lisa Neuenroth et al. "Proteomic analysis of the human hippocampus identifies neuronal pentraxin 1 ( NPTX1 ) as synapto‐axonal target in late‐stage Parkinson's disease​." ​Journal of Neurochemistry ​166, no. 5 (2023): ​862​-874​. ​https://doi.org/10.1111/jnc.15924.
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  • 2022 | Preprint
    ​ ​Hausmann, Fabian, Can Ergen-Behr, Robin Khatri, Mohamed Marouf, Sonja Hänzelmann, Nicola Gagliani, Samuel Huber, Pierre Machart, and Stefan Bonn​. "DiSCERN - Deep Single Cell Expression ReconstructioN for improved cell clustering and cell subtype and state detection​." ​Preprint, submitted ​​2022. https://doi.org/10.1101/2022.03.09.483600.
    ​Details  DOI 
  • 2022 | Journal Article
    ​ ​Khan, Mudassar N., Pitchaiah Cherukuri, Francesco Negro, Ashish Rajput, Piotr Fabrowski, Vikas Bansal, Camille Lancelin, Tsung-I Lee, Yehan Bian, and William P. Mayer. "ERR2 and ERR3 promote the development of gamma motor neuron functional properties required for proprioceptive movement control​." ​PLoS Biology ​20, no. 12 (2022): ​e3001923​. ​https://doi.org/10.1371/journal.pbio.3001923.
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  • 2021 | Book Chapter
    ​ ​Kusch, Harald, Robert Kossen, Markus Suhr, Luca Freckmann, Linus Weber, Christian Henke, Christoph Lehmann et al. "Management of Metadata Types in Basic Cardiological Research​." ​In German Medical Data Sciences 2021: Digital Medicine: Recognize – Understand – Heal, edited by Rainer Röhrig, Tim Beißbarth, Jochem König, Claudia Ose, Geraldine Rauch, Ulrich Sax, Björn Schreiweis et al.​, 59​-68​. ​​2021. https://doi.org/10.3233/SHTI210542.
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  • 2021 | Journal Article | Research Paper | 
    ​ ​Butt, Umer Javed, Agnes A. Steixner-Kumar, Constanze Depp, Ting Sun, Imam Hassouna, Liane Wüstefeld, Sahab Arinrad et al. "Hippocampal neurons respond to brain activity with functional hypoxia​." ​Molecular Psychiatry ​26, no. 6 (2021): ​1790​-1807​. ​https://doi.org/10.1038/s41380-020-00988-w.
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  • 2021 | Research Data
    ​ ​Kusch, Harald, Christian R. K. D. Bauer, Theresa Bender, Jonas Hügel, Robert Kossen, Sara Yasemin Nußbeck, and Ulrich Sax. GMDS2021 ePoster and video teaser for DOI 10.3205/21gmds072​​. ​Göttingen: ​GRO.data, ​2021. ​2021. https://doi.org/10.25625/8vukqa.
    ​Details  DOI 
  • 2021 | Journal Article | Research Paper | 
    ​ ​Zhao, Yu, Christoph Kilian, Jan-Eric Turner, Lidia Bosurgi, Kevin Roedl, Patricia Bartsch, Ann-Christin Gnirck et al. "Clonal expansion and activation of tissue-resident memory-like Th17 cells expressing GM-CSF in the lungs of severe COVID-19 patients​." ​Science Immunology ​6, no. 56 (2021): . ​https://doi.org/10.1126/sciimmunol.abf6692.
    ​Details  DOI  PMID  PMC 
  • 2021 | Journal Article | Research Paper | 
    ​ ​Wartmann, Hannes, Sven Heins, Karin Kloiber, and Stefan Bonn. "Bias-invariant RNA-sequencing metadata annotation​." ​GigaScience ​10, no. 9 (2021): . ​https://doi.org/10.1093/gigascience/giab064.
    ​Details  DOI  PMID  PMC 
  • 2021 | Journal Article | Research Paper | 
    ​ ​Silbern, Ivan, Kuan-Ting Pan, Maksims Fiosins, Stefan Bonn, Silvio O. Rizzoli, Eugenio Francesco Fornasiero, Henning Urlaub, and Reinhard Jahn. "Protein Phosphorylation in Depolarized Synaptosomes: Dissecting Primary Effects of Calcium from Synaptic Vesicle Cycling​." ​Molecular & Cellular Proteomics ​20 (2021): ​100061​. ​https://doi.org/10.1016/j.mcpro.2021.100061.
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  • 2020 | Journal Article | Research Paper | 
    ​ ​Reshetniak, Sofiia, Jan‐Eike Ußling, Eleonora Perego, Burkhard Rammner, Thomas Schikorski, Eugenio F. Fornasiero, Sven Truckenbrodt, Sarah Köster, and Silvio O. Rizzoli. "A comparative analysis of the mobility of 45 proteins in the synaptic bouton​." ​The EMBO Journal ​39, no. 16 (2020): ​e104596​. ​https://doi.org/10.15252/embj.2020104596.
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  • 2020 | Journal Article | Research Paper
    ​ ​Matschke, Jakob, Marc Lütgehetmann, Christian Hagel, Jan P Sperhake, Ann Sophie Schröder, Carolin Edler, Herbert Mushumba et al. "Neuropathology of patients with COVID-19 in Germany: a post-mortem case series​." ​The Lancet. Neurology ​19, no. 11 (2020): ​919​-929​. ​https://doi.org/10.1016/S1474-4422(20)30308-2.
    ​Details  DOI 
  • 2020 | Journal Article | Research Paper | 
    ​ ​Menden, Kevin, Mohamed Marouf, Sergio Oller, Anupriya Dalmia, Daniel Sumner Magruder, Karin Kloiber, Peter Heutink, and Stefan Bonn. "Deep learning–based cell composition analysis from tissue expression profiles​." ​Science Advances ​6, no. 30 (2020): ​eaba2619​. ​https://doi.org/10.1126/sciadv.aba2619.
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  • 2020 | Journal Article | Research Paper | 
    ​ ​Marouf, Mohamed, Pierre Machart, Vikas Bansal, Christoph Kilian, Daniel S. Magruder, Christian F. Krebs, and Stefan Bonn. "Realistic in silico generation and augmentation of single-cell RNA-seq data using generative adversarial networks​." ​Nature Communications ​11, no. 1 (2020): . ​https://doi.org/10.1038/s41467-019-14018-z.
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  • 2020 | Journal Article | Research Paper | 
    ​ ​Ripamonti, Silvia, Orr Shomroni, Jeong Seop Rhee, Kamal Chowdhury, Olaf Jahn, Klaus Peter Hellmann, Stefan Bonn, Nils Brose, and Marilyn Tirard. "SUMOylation controls the neurodevelopmental function of the transcription factor Zbtb20​." ​Journal of Neurochemistry ​154, no. 6 (2020): ​647​-661​. ​https://doi.org/10.1111/jnc.15008.
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  • 2019 | Journal Article | Research Paper
    ​ ​Fiosina, Jelena, Maksims Fiosins, and Stefan Bonn. "Explainable Deep Learning for Augmentation of Small RNA Expression Profiles​." ​Journal of Computational Biology ​27, no. 2 (2019): ​234​-247​. ​https://doi.org/10.1089/cmb.2019.0320.
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  • 2019 | Conference Paper
    ​ ​Fiosina, Jelena, Maksims Fiosins, and Stefan Bonn. "Deep Learning and Random Forest-Based Augmentation of sRNA Expression Profiles​." ​In Bioinformatics Research and Applications, edited by Zhipeng Cai, Pavel Skums, Min Li. ​159​-170. ​Springer, ​2019. https://doi.org/10.1007/978-3-030-20242-2_14.
    ​Details  DOI 
  • 2019 | Preprint
    ​ ​Fiosina, Jelena, Maksims Fiosins, and Stefan Bonn​. "Explainable Deep Learning for Augmentation of sRNA Expression Profiles​." ​Preprint, submitted ​​2019. 
    ​Details  arXiv 
  • 2019 | Preprint
    ​ ​Menden, Kevin, Mohamed Marouf, Sergio Oller, Anupriya Dalmia, Karin Kloiber, Peter Heutink, and Stefan Bonn​. "Deep-learning-based cell composition analysis from tissue expression profiles​." ​Preprint, submitted ​​2019. https://doi.org/10.1101/659227.
    ​Details  DOI 
  • 2019 | Journal Article | Research Paper | 
    ​ ​Keihani, S., V. Kluever, S. Mandad, V. Bansal, R. Rahman, E. Fritsch, L. Caldi Gomes et al. "The long noncoding RNA neuroLNC regulates presynaptic activity by interacting with the neurodegeneration-associated protein TDP-43​." ​Science Advances ​5, no. 12 (2019): ​eaay2670​. ​https://doi.org/10.1126/sciadv.aay2670.
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  • 2019 | Journal Article | Research Paper | 
    ​ ​Kaczmarczyk, Lech, Vikas Bansal, Ashish Rajput, Raza-Ur Rahman, Wiesław Krzyżak, Joachim Degen, Stefanie Poll, Martin Fuhrmann, Stefan Bonn, and Walker Scot Jackson. "Tagger-A Swiss army knife for multiomics to dissect cell type-specific mechanisms of gene expression in mice​." ​PLoS Biology ​17, no. 8 (2019): ​e3000374​. ​https://doi.org/10.1371/journal.pbio.3000374.
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