RG Bonn

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  • 2023 | Journal Article | 
    ​ ​Kylies, Dominik, et al. "Expansion-enhanced super-resolution radial fluctuations enable nanoscale molecular profiling of pathology specimens​." ​Nature Nanotechnology, ​2023, , ​doi: 10.1038/s41565-023-01328-z. 
    ​Details  DOI  PMID  PMC 
  • 2023 | Journal Article
    ​ ​Warth Perez Arias, Carmina C., et al. "Proteomic analysis of the human hippocampus identifies neuronal pentraxin 1 ( NPTX1 ) as synapto‐axonal target in late‐stage Parkinson's disease​." ​Journal of Neurochemistry, vol. 166, no. 5, ​2023, pp. 862​-874​, ​doi: 10.1111/jnc.15924. 
    ​Details  DOI  PMID  PMC 
  • 2022 | Preprint
    ​ ​Hausmann, Fabian, et al. "DiSCERN - Deep Single Cell Expression ReconstructioN for improved cell clustering and cell subtype and state detection​." ​​2022. doi: 10.1101/2022.03.09.483600. 
    ​Details  DOI 
  • 2022 | Journal Article
    ​ ​Khan, Mudassar N., et al. "ERR2 and ERR3 promote the development of gamma motor neuron functional properties required for proprioceptive movement control​." ​PLoS Biology, vol. 20, no. 12, ​2022, , ​doi: 10.1371/journal.pbio.3001923. 
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  • 2021 | Book Chapter
    ​ ​Kusch, Harald, et al. "Management of Metadata Types in Basic Cardiological Research​." ​German Medical Data Sciences 2021: Digital Medicine: Recognize – Understand – Heal, edited by Rainer Röhrig, Tim Beißbarth, Jochem König, Claudia Ose, Geraldine Rauch, Ulrich Sax, Björn Schreiweis et al., ​2021, pp. 59​-68​. ​doi: 10.3233/SHTI210542. 
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  • 2021 | Journal Article | Research Paper | 
    ​ ​Butt, Umer Javed, et al. "Hippocampal neurons respond to brain activity with functional hypoxia​." ​Molecular Psychiatry, vol. 26, no. 6, ​2021, pp. 1790​-1807​, ​doi: 10.1038/s41380-020-00988-w. 
    ​Details  DOI  PMID  PMC 
  • 2021 | Research Data
    ​ ​Kusch, Harald, et al. GMDS2021 ePoster and video teaser for DOI 10.3205/21gmds072​. ​​GRO.data, ​2021, doi: 10.25625/8vukqa. 
    ​Details  DOI 
  • 2021 | Journal Article | Research Paper | 
    ​ ​Zhao, Yu, et al. "Clonal expansion and activation of tissue-resident memory-like Th17 cells expressing GM-CSF in the lungs of severe COVID-19 patients​." ​Science Immunology, vol. 6, no. 56, ​2021, , ​doi: 10.1126/sciimmunol.abf6692. 
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  • 2021 | Journal Article | Research Paper | 
    ​ ​Wartmann, Hannes, et al. "Bias-invariant RNA-sequencing metadata annotation​." ​GigaScience, vol. 10, no. 9, ​2021, , ​doi: 10.1093/gigascience/giab064. 
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  • 2021 | Journal Article | Research Paper | 
    ​ ​Silbern, Ivan, et al. "Protein Phosphorylation in Depolarized Synaptosomes: Dissecting Primary Effects of Calcium from Synaptic Vesicle Cycling​." ​Molecular & Cellular Proteomics, vol. 20, ​2021, p. 100061​, ​doi: 10.1016/j.mcpro.2021.100061. 
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  • 2020 | Journal Article | Research Paper | 
    ​ ​Reshetniak, Sofiia, et al. "A comparative analysis of the mobility of 45 proteins in the synaptic bouton​." ​The EMBO Journal, vol. 39, no. 16, ​2020, , ​doi: 10.15252/embj.2020104596. 
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  • 2020 | Journal Article | Research Paper
    ​ ​Matschke, Jakob, et al. "Neuropathology of patients with COVID-19 in Germany: a post-mortem case series​." ​The Lancet. Neurology, vol. 19, no. 11, ​2020, pp. 919​-929​, ​doi: 10.1016/S1474-4422(20)30308-2. 
    ​Details  DOI 
  • 2020 | Journal Article | Research Paper | 
    ​ ​Menden, Kevin, et al. "Deep learning–based cell composition analysis from tissue expression profiles​." ​Science Advances, vol. 6, no. 30, ​2020, p. eaba2619​, ​doi: 10.1126/sciadv.aba2619. 
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  • 2020 | Journal Article | Research Paper | 
    ​ ​Marouf, Mohamed, et al. "Realistic in silico generation and augmentation of single-cell RNA-seq data using generative adversarial networks​." ​Nature Communications, vol. 11, no. 1, ​2020, , ​doi: 10.1038/s41467-019-14018-z. 
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  • 2020 | Journal Article | Research Paper | 
    ​ ​Ripamonti, Silvia, et al. "SUMOylation controls the neurodevelopmental function of the transcription factor Zbtb20​." ​Journal of Neurochemistry, vol. 154, no. 6, ​2020, pp. 647​-661​, ​doi: 10.1111/jnc.15008. 
    ​Details  DOI  PMID  PMC 
  • 2019 | Journal Article | Research Paper
    ​ ​Fiosina, Jelena, Maksims Fiosins, and Stefan Bonn. "Explainable Deep Learning for Augmentation of Small RNA Expression Profiles​." ​Journal of Computational Biology, vol. 27, no. 2, ​2019, pp. 234​-247​, ​doi: 10.1089/cmb.2019.0320. 
    ​Details  DOI  PMID  PMC 
  • 2019 | Conference Paper
    ​ ​Fiosina, Jelena, Maksims Fiosins, and Stefan Bonn. "Deep Learning and Random Forest-Based Augmentation of sRNA Expression Profiles​." ​Bioinformatics Research and Applications, edited by Zhipeng Cai, Pavel Skums, Min Li, ​Springer, ​2019, pp. 159​-170​. ​doi: 10.1007/978-3-030-20242-2_14. 
    ​Details  DOI 
  • 2019 | Preprint
    ​ ​Fiosina, Jelena, Maksims Fiosins, and Stefan Bonn. "Explainable Deep Learning for Augmentation of sRNA Expression Profiles​." ​​2019. 
    ​Details  arXiv 
  • 2019 | Preprint
    ​ ​Menden, Kevin, et al. "Deep-learning-based cell composition analysis from tissue expression profiles​." ​​2019. doi: 10.1101/659227. 
    ​Details  DOI 
  • 2019 | Journal Article | Research Paper | 
    ​ ​Kaczmarczyk, Lech, et al. "Tagger-A Swiss army knife for multiomics to dissect cell type-specific mechanisms of gene expression in mice​." ​PLoS Biology, vol. 17, no. 8, ​2019, , ​doi: 10.1371/journal.pbio.3000374. 
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  • 2019 | Journal Article | Research Paper | 
    ​ ​Keihani, S., et al. "The long noncoding RNA neuroLNC regulates presynaptic activity by interacting with the neurodegeneration-associated protein TDP-43​." ​Science Advances, vol. 5, no. 12, ​2019, p. eaay2670​, ​doi: 10.1126/sciadv.aay2670. 
    ​Details  DOI  PMID  PMC 

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