RG Bonn

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  • 2023 | Journal Article | 
    ​ ​Kylies D, Zimmermann M, Haas F, Schwerk M, Kuehl M, Brehler M, et al. ​Expansion-enhanced super-resolution radial fluctuations enable nanoscale molecular profiling of pathology specimens​. ​​Nature Nanotechnology. ​2023;. ​doi:10.1038/s41565-023-01328-z. 
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  • 2023 | Journal Article
    ​ ​Warth Perez Arias CC, Silbern I, Caldi Gomes L, Wartmann H, Dambeck V, Fanz J, et al. ​Proteomic analysis of the human hippocampus identifies neuronal pentraxin 1 ( NPTX1 ) as synapto‐axonal target in late‐stage Parkinson's disease​. ​​Journal of Neurochemistry. ​2023;​166​(5):​​862​-874​. ​doi:10.1111/jnc.15924. 
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  • 2022 | Preprint
    ​ ​Hausmann F, Ergen-Behr C, Khatri R, Marouf M, Hänzelmann S, Gagliani N, et al. ​DiSCERN - Deep Single Cell Expression ReconstructioN for improved cell clustering and cell subtype and state detection​. ​​2022. Available from: https://doi.org/10.1101/2022.03.09.483600​
    ​Details  DOI 
  • 2022 | Journal Article
    ​ ​Khan MN, Cherukuri P, Negro F, Rajput A, Fabrowski P, Bansal V, et al. ​ERR2 and ERR3 promote the development of gamma motor neuron functional properties required for proprioceptive movement control​. ​​PLoS Biology. ​2022;​20​(12). ​doi:10.1371/journal.pbio.3001923. 
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  • 2021 | Book Chapter
    ​ ​Kusch H, Kossen R, Suhr M, Freckmann L, Weber L, Henke C, et al. ​Management of Metadata Types in Basic Cardiological Research​. ​In: Röhrig R, Beißbarth T, König J, Ose C, Rauch G, Sax U, et al.​, editors. ​German Medical Data Sciences 2021: Digital Medicine: Recognize – Understand – Heal. ​2021. p. 59​-68​. ​doi:10.3233/SHTI210542. 
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  • 2021 | Journal Article | Research Paper | 
    ​ ​Butt UJ, Steixner-Kumar AA, Depp C, Sun T, Hassouna I, Wüstefeld L, et al. ​Hippocampal neurons respond to brain activity with functional hypoxia​. ​​Molecular Psychiatry. ​2021;​26​(6):​​1790​-1807​. ​doi:10.1038/s41380-020-00988-w. 
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  • 2021 | Research Data
    ​ ​Kusch H, Bauer CRKD, Bender T, Hügel J, Kossen R, Nußbeck SY, et al. ​GMDS2021 ePoster and video teaser for DOI 10.3205/21gmds072​. ​​Göttingen: ​GRO.data; ​2021. Available from: https://doi.org/10.25625/8vukqa​
    ​Details  DOI 
  • 2021 | Journal Article | Research Paper | 
    ​ ​Zhao Y, Kilian C, Turner, Jan-Eric, Bosurgi L, Roedl K, Bartsch P, et al. ​Clonal expansion and activation of tissue-resident memory-like Th17 cells expressing GM-CSF in the lungs of severe COVID-19 patients​. ​​Science Immunology. ​2021;​6​(56). ​doi:10.1126/sciimmunol.abf6692. 
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  • 2021 | Journal Article | Research Paper | 
    ​ ​Wartmann H, Heins S, Kloiber K, Bonn S. ​Bias-invariant RNA-sequencing metadata annotation​. ​​GigaScience. ​2021;​10​(9). ​doi:10.1093/gigascience/giab064. 
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  • 2021 | Journal Article | Research Paper | 
    ​ ​Silbern I, Pan, Kuan-Ting, Fiosins M, Bonn S, Rizzoli SO, Fornasiero EF, et al. ​Protein Phosphorylation in Depolarized Synaptosomes: Dissecting Primary Effects of Calcium from Synaptic Vesicle Cycling​. ​​Molecular & Cellular Proteomics. ​2021;​20​:​​100061​. ​doi:10.1016/j.mcpro.2021.100061. 
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  • 2020 | Journal Article | Research Paper | 
    ​ ​Reshetniak S, Ußling J, Perego E, Rammner B, Schikorski T, Fornasiero EF, et al. ​A comparative analysis of the mobility of 45 proteins in the synaptic bouton​. ​​The EMBO Journal. ​2020;​39​(16). ​doi:10.15252/embj.2020104596. 
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  • 2020 | Journal Article | Research Paper
    ​ ​Matschke J, Lütgehetmann M, Hagel C, Sperhake J, Schröder AS, Edler C, et al. ​Neuropathology of patients with COVID-19 in Germany: a post-mortem case series​. ​​The Lancet. Neurology. ​2020;​19​(11):​​919​-929​. ​doi:10.1016/S1474-4422(20)30308-2. 
    ​Details  DOI 
  • 2020 | Journal Article | Research Paper | 
    ​ ​Menden K, Marouf M, Oller S, Dalmia A, Magruder DS, Kloiber K, et al. ​Deep learning–based cell composition analysis from tissue expression profiles​. ​​Science Advances. ​2020;​6​(30):​​eaba2619​. ​doi:10.1126/sciadv.aba2619. 
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  • 2020 | Journal Article | Research Paper | 
    ​ ​Marouf M, Machart P, Bansal V, Kilian C, Magruder DS, Krebs CF, et al. ​Realistic in silico generation and augmentation of single-cell RNA-seq data using generative adversarial networks​. ​​Nature Communications. ​2020;​11​(1). ​doi:10.1038/s41467-019-14018-z. 
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  • 2020 | Journal Article | Research Paper | 
    ​ ​Ripamonti S, Shomroni O, Rhee JS, Chowdhury K, Jahn O, Hellmann KP, et al. ​SUMOylation controls the neurodevelopmental function of the transcription factor Zbtb20​. ​​Journal of Neurochemistry. ​2020;​154​(6):​​647​-661​. ​doi:10.1111/jnc.15008. 
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  • 2019 | Journal Article | Research Paper
    ​ ​Fiosina J, Fiosins M, Bonn S. ​Explainable Deep Learning for Augmentation of Small RNA Expression Profiles​. ​​Journal of Computational Biology. ​2019;​27​(2):​​234​-247​. ​doi:10.1089/cmb.2019.0320. 
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  • 2019 | Conference Paper
    ​ ​Fiosina J, Fiosins M, Bonn S. ​Deep Learning and Random Forest-Based Augmentation of sRNA Expression Profiles​. ​In: Cai Z, Skums P, Li M​, editors. ​Bioinformatics Research and Applications. 15th International Symposium, ISBRA 2019; ​2019-06-03​ - 2019-06-06​; ​​Barcelona, Spain. ​Springer; ​2019.  p. 159​-170​. ​doi:10.1007/978-3-030-20242-2_14.
    ​Details  DOI 
  • 2019 | Preprint
    ​ ​Fiosina J, Fiosins M, Bonn S. ​Explainable Deep Learning for Augmentation of sRNA Expression Profiles​. ​​2019. 
    ​Details  arXiv 
  • 2019 | Preprint
    ​ ​Menden K, Marouf M, Oller S, Dalmia A, Kloiber K, Heutink P, et al. ​Deep-learning-based cell composition analysis from tissue expression profiles​. ​​2019. Available from: https://doi.org/10.1101/659227​
    ​Details  DOI 
  • 2019 | Journal Article | Research Paper | 
    ​ ​Kaczmarczyk L, Bansal V, Rajput A, Rahman, Raza-Ur, Krzyżak W, Degen J, et al. ​Tagger-A Swiss army knife for multiomics to dissect cell type-specific mechanisms of gene expression in mice​. ​​PLoS Biology. ​2019;​17​(8). ​doi:10.1371/journal.pbio.3000374. 
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  • 2019 | Journal Article | Research Paper | 
    ​ ​Keihani S, Kluever V, Mandad S, Bansal V, Rahman R, Fritsch E, et al. ​The long noncoding RNA neuroLNC regulates presynaptic activity by interacting with the neurodegeneration-associated protein TDP-43​. ​​Science Advances. ​2019;​5​(12):​​eaay2670​. ​doi:10.1126/sciadv.aay2670. 
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