Prof. Dr. Burkhard Morgenstern

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  • 2021 | Journal Article
    ​ ​Dieckmann, Anastasia-Lisa, et al. "Genome and Methylome analysis of a phylogenetic novel Campylobacter coli cluster with C. jejuni introgression​." ​Microbial Genomics, vol. 7, no. 10, ​2021, , ​doi: 10.1099/mgen.0.000679. 
    ​Details  DOI 
  • 2020 | Preprint
    ​ ​Leonard, Miriam, et al. "V. longisporum elicits media-dependent secretome responses with a further capacity to distinguish between plant-related environments​." ​​2020. doi: 10.1101/2020.02.11.943803. 
    ​Details  DOI 
  • 2020 | Journal Article
    ​ ​Hosseini, Morteza, et al. "Smash++: an alignment-free and memory-efficient tool to find genomic rearrangements​." ​GigaScience, vol. 9, no. 5, ​2020, , ​doi: 10.1093/gigascience/giaa048. 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Leimeister, Chris-André, Thomas Dencker, and Burkhard Morgenstern. "Accurate multiple alignment of distantly related genome sequences using filtered spaced word matches as anchor points​." ​Bioinformatics, vol. 35, no. 2, ​2018, pp. 211​-218​, ​doi: 10.1093/bioinformatics/bty592. 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Leimeister, Chris-Andre, et al. "Prot-SpaM: fast alignment-free phylogeny reconstruction based on whole-proteome sequences​." ​GigaScience, vol. 8, no. 3, ​2018, , ​doi: 10.1093/gigascience/giy148. 
    ​Details  DOI 
  • 2014 | Journal Article
    ​ ​Leimeister, Chris-Andre, and Burkhard Morgenstern. "kmacs: the k-mismatch average common substring approach to alignment-free sequence comparison​." ​Bioinformatics, vol. 30, no. 14, ​2014, pp. 2000​-2008​, ​doi: 10.1093/bioinformatics/btu331. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2013 | Conference Proceedings
    ​ ​Beißbarth, Tim, et al.​, editors. German Conference on Bioinformatics 2013​. ​​2013. 
    ​Details 
  • 2011 | Journal Article
    ​ ​Rachfall, Nicole, et al. "5 ' TRU: Identification and Analysis of Translationally Regulative 5 ' Untranslated Regions in Amino Acid Starved Yeast Cells​." ​Molecular & Cellular Proteomics, vol. 10, no. 6, ​2011, , ​doi: 10.1074/mcp.M110.003350. 
    ​Details  DOI  WoS 
  • 2011 | Journal Article
    ​ ​Lingner, Thomas, et al. "Identification of Novel Plant Peroxisomal Targeting Signals by a Combination of Machine Learning Methods and in Vivo Subcellular Targeting Analyses​." ​The Plant Cell, vol. 23, no. 4, ​2011, pp. 1556​-1572​, ​doi: 10.1105/tpc.111.084095. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2010 | Journal Article
    ​ ​Schultz, Anne-Kathrin, et al. "jpHMM: improving the reliability of recombination prediction in HIV-1​." ​Nucleic Acids Research, vol. 38, no. 3, ​2010, pp. 1059​-1059​, ​doi: 10.1093/nar/gkq015. 
    ​Details  DOI 
  • 2010 | Journal Article
    ​ ​Bulla, Ingo, et al. "HIV classification using the coalescent theory​." ​Bioinformatics, vol. 26, no. 11, ​2010, pp. 1409​-1415​, ​doi: 10.1093/bioinformatics/btq159. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2010 | Journal Article
    ​ ​Corel, Eduardo, Florian Pitschi, and Burkhard Morgenstern. "A min-cut algorithm for the consistency problem in multiple sequence alignment​." ​Bioinformatics, vol. 26, no. 8, ​2010, pp. 1015​-1021​, ​doi: 10.1093/bioinformatics/btq082. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2010 | Journal Article
    ​ ​Pick, Kerstin, et al. "Improved Phylogenomic Taxon Sampling Noticeably Affects Nonbilaterian Relationships​." ​Molecular Biology and Evolution, vol. 27, no. 9, ​2010, pp. 1983​-1987​, ​doi: 10.1093/molbev/msq089. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2009 | Journal Article | Research Paper
    ​ ​Sommerfeld, Dietmar, et al. "AUGUSTUS at MediGRID: Adaption of a bioinformatics application to grid computing for efficient genome analysis​." ​Future Generation Computer Systems, vol. 25, no. 3, ​2009, pp. 337​-345​, ​doi: 10.1016/j.future.2008.05.010. 
    ​Details  DOI  WoS 
  • 2009 | Conference Abstract
    ​ ​Goebel, C., et al. "Identification of metabolic changes after wounding in Arabidopsis thaliana by an unbiased UPLC-MS approach​." ​Chemistry and Physics of Lipids, vol. 160, ​2009, . ​doi: 10.1016/j.chemphyslip.2009.06.024. 
    ​Details  DOI  WoS 
  • 2009 | Journal Article
    ​ ​Schreiber, Fabian, Gert Woerheide, and Burkhard Morgenstern. "OrthoSelect: a web server for selecting orthologous gene alignments from EST sequences​." ​Nucleic Acids Research, vol. 37, ​2009, pp. W185​-W188​, ​doi: 10.1093/nar/gkp434. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2009 | Journal Article
    ​ ​Schultz, Anne-Kathrin, et al. "jpHMM: Improving the reliability of recombination prediction in HIV-1​." ​Nucleic Acids Research, vol. 37, ​2009, pp. W647​-W651​, ​doi: 10.1093/nar/gkp371. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2009 | Journal Article
    ​ ​Philippe, Herve, et al. "Phylogenomics Revives Traditional Views on Deep Animal Relationships​." ​Current Biology, vol. 19, no. 8, ​2009, pp. 706​-712​, ​doi: 10.1016/j.cub.2009.02.052. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2009 | Journal Article
    ​ ​Schmeisser, Christel, et al. "Rhizobium sp Strain NGR234 Possesses a Remarkable Number of Secretion Systems​." ​Applied and Environmental Microbiology, vol. 75, no. 12, ​2009, pp. 4035​-4045​, ​doi: 10.1128/AEM.00515-09. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2005 | Journal Article
    ​ ​Tech, Maike, et al. "TICO: a tool for improving predictions of prokaryotic translation initiation sites​." ​Bioinformatics, vol. 21, no. 17, ​2005, pp. 3568​-3569​, ​doi: 10.1093/bioinformatics/bti563. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2005 | Journal Article
    ​ ​Morgenstern, Burkhard, et al. "Multiple sequence alignment with user-defined constraints at GOBICS​." ​Bioinformatics, vol. 21, no. 7, ​2005, pp. 1271​-1273​, ​doi: 10.1093/bioinformatics/bti142. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2004 | Conference Abstract
    ​ ​Morgenstern, Burkhard. "The DIALIGN multiple alignment program: Recent developments and applications​." ​CLADISTICS-THE INTERNATIONAL JOURNAL OF THE WILLI HENNIG SOCIETY, vol. 20, no. 1, ​2004, pp. 89​-90​. ​
    ​Details  WoS 
  • 2003 | Journal Article
    ​ ​Morgenstern, B., et al. "AltAVisT: Comparing alternative multiple sequence alignments​." ​Bioinformatics, vol. 19, no. 3, ​2003, pp. 425​-426​, ​doi: 10.1093/bioinformatics/btf882. 
    ​Details  DOI 
  • 2003 | Journal Article
    ​ ​Taher, L., et al. "AGenDA: homology-based gene prediction​." ​Bioinformatics, vol. 19, no. 12, ​2003, pp. 1575​-1577​, ​doi: 10.1093/bioinformatics/btg181. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2003 | Journal Article
    ​ ​Sammeth, Michael, Burkhard Morgenstern, and Jens Stoye. "Divide-and-conquer multiple alignment with segment-based constraints​." ​Bioinformatics, vol. 19, ​2003, pp. II189​-II195​, ​doi: 10.1093/bioinformatics/btg1077. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2002 | Journal Article
    ​ ​Morgenstern, B., et al. "Exon discovery by genomic sequence alignment​." ​Bioinformatics, vol. 18, no. 6, ​2002, pp. 777​-787​, ​doi: 10.1093/bioinformatics/18.6.777. 
    ​Details  DOI 
  • 2002 | Journal Article
    ​ ​Morgenstern, B.. "A simple and space-efficient fragment-chaining algorithm for alignment of DNA and protein sequences​." ​Applied Mathematics Letters, vol. 15, no. 1, ​2002, pp. 11​-16​, ​doi: 10.1016/S0893-9659(01)00085-4. 
    ​Details  DOI 
  • 2001 | Journal Article
    ​ ​Geier, B., et al. "The HIB database of annotated UniGene clusters​." ​Bioinformatics, vol. 17, no. 6, ​2001, pp. 571​-572​, ​doi: 10.1093/bioinformatics/17.6.571. 
    ​Details  DOI 
  • 2000 | Journal Article
    ​ ​Morgenstern, B.. "A space-efficient algorithm for aligning large genomic sequences​." ​Bioinformatics, vol. 16, no. 10, ​2000, pp. 948​-949​, ​doi: 10.1093/bioinformatics/16.10.948. 
    ​Details  DOI 
  • 1999 | Journal Article
    ​ ​Lenhof, H., B. Morgenstern, and K Reinert. "An exact solution for the segment-to-segment multiple sequence alignment problem​." ​Bioinformatics, vol. 15, no. 3, ​1999, pp. 203​-210​, ​doi: 10.1093/bioinformatics/15.3.203. 
    ​Details  DOI 
  • 1999 | Journal Article
    ​ ​Morgenstern, B., and W. R. Atchley. "Evolution of bHLH transcription factors: modular evolution by domain shuffling?​." ​Molecular Biology and Evolution, vol. 16, no. 12, ​1999, pp. 1654​-1663​, ​doi: 10.1093/oxfordjournals.molbev.a026079. 
    ​Details  DOI 
  • 1999 | Journal Article
    ​ ​Morgenstern, B.. "DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment​." ​Bioinformatics, vol. 15, no. 3, ​1999, pp. 211​-218​, ​doi: 10.1093/bioinformatics/15.3.211. 
    ​Details  DOI 
  • 1998 | Journal Article
    ​ ​Dress, A., B. Morgenstern, and J. Stoye. "The number of standard and of effective multiple alignments​." ​Applied Mathematics Letters, vol. 11, no. 4, ​1998, pp. 43​-49​, ​doi: 10.1016/S0893-9659(98)00054-8. 
    ​Details  DOI 
  • 1998 | Journal Article
    ​ ​Morgenstern, B., et al. "DIALIGN: finding local similarities by multiple sequence alignment​." ​Bioinformatics, vol. 14, no. 3, ​1998, pp. 290​-294​, ​doi: 10.1093/bioinformatics/14.3.290. 
    ​Details  DOI 
  • 1996 | Journal Article
    ​ ​Morgenstern, B., A Dress, and T Werner. "Multiple DNA and protein sequence alignment based on segment-to-segment comparison.​." ​Proceedings of the National Academy of Sciences, vol. 93, no. 22, ​1996, pp. 12098​-12103​, ​doi: 10.1073/pnas.93.22.12098. 
    ​Details  DOI 

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