Prof. Dr. Bert L. de Groot

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  • 1999 | Journal Article
    ​ ​A kinetic model for the internal motions of proteins: Diffusion between multiple harmonic wells​
    Amadei, A.; de Groot, B. L. ; Ceruso, M.-A.; Paci, M.; Di Nola, A. & Berendsen, H.​ (1999) 
    Proteins, 35(3) pp. 283​-292​.​ DOI: https://doi.org/10.1002/(SICI)1097-0134(19990515)35:3<283::AID-PROT2>3.0.CO;2-R 
    ​Details  DOI 
  • 1998 | Journal Article
    ​ ​Domain motions in bacteriophage T4 lysozyme: A comparison between molecular dynamics and crystallographic data​
    de Groot, B. L. ; Hayward, S.; van Aalten, D. M. F; Amadei, A. & Berendsen, H. J. C.​ (1998) 
    Proteins, 31(2) pp. 116​-127​.​ DOI: https://doi.org/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K 
    ​Details  DOI 
  • 1997 | Journal Article
    ​ ​Protein dynamics derived from clusters of crystal structures​
    van Aalten, D. M.; Conn, D. A.; de Groot, B. L. ; Berendsen, H. J.; Findlay, J. B. & Amadei, A.​ (1997) 
    Biophysical Journal, 73(6) pp. 2891​-2896​.​ DOI: https://doi.org/10.1016/S0006-3495(97)78317-6 
    ​Details  DOI 
  • 1997 | Journal Article
    ​ ​Prediction of protein conformational freedom from distance constraints​
    de Groot, B. L. ; van Aalten, D. M. F.; Scheek, R. M.; Amadei, A.; Vriend, G. & Berendsen, H. J. C.​ (1997) 
    Proteins, 29(2) pp. 240​-251​.​ DOI: https://doi.org/10.1002/(SICI)1097-0134(199710)29:2<240::AID-PROT11>3.0.CO;2-O 
    ​Details  DOI 
  • 1996 | Journal Article
    ​ ​An extended sampling of the configurational space of HPr fromE. coli​
    de Groot, B. L. ; Amadei, A.; Scheek, R. M.; van Nuland, N. A. J. & Berendsen, H. J. C.​ (1996) 
    Proteins, 26(3) pp. 314​-322​.​ DOI: https://doi.org/10.1002/(SICI)1097-0134(199611)26:3<314::AID-PROT7>3.0.CO;2-D 
    ​Details  DOI 
  • 1996 | Journal Article
    ​ ​The consistency of large concerted motions in proteins in molecular dynamics simulations​
    de Groot, B. L. ; van Aalten, D.; Amadei, A. & Berendsen, H.​ (1996) 
    Biophysical Journal, 71(4) pp. 1707​-1713​.​ DOI: https://doi.org/10.1016/S0006-3495(96)79372-4 
    ​Details  DOI 
  • 1996 | Journal Article
    ​ ​Towards an Exhaustive Sampling of the Configurational Spaces of the Two Forms of the Peptide Hormone Guanylin​
    de Groot, B. L. ; Amadei, A.; van Aalten, D. M. F. & Berendsen, H. J. C.​ (1996) 
    Journal of Biomolecular Structure & Dynamics, 13(5) pp. 741​-751​.​ DOI: https://doi.org/10.1080/07391102.1996.10508888 
    ​Details  DOI 
  • 1996 | Journal Article
    ​ ​An Efficient Method for Sampling the Essential Subspace of Proteins​
    Amadei, A.; Linssen, A. B. M.; de Groot, B. L. ; van Aalten, D. M. F. & Berendsen, H. J. C.​ (1996) 
    Journal of Biomolecular Structure & Dynamics, 13(4) pp. 615​-625​.​ DOI: https://doi.org/10.1080/07391102.1996.10508874 
    ​Details  DOI 
  • 1995 | Journal Article
    ​ ​Structure from NMR and molecular dynamics: Distance restraining inhibits motion in the essential subspace​
    Scheek, R. M.; van Nuland, N. A. J.; de Groot, B. L.   & Amadei, A.​ (1995) 
    Journal of Biomolecular NMR, 6(1) pp. 106​-111​.​ DOI: https://doi.org/10.1007/BF00417496 
    ​Details  DOI 

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