Prof. Dr. Burkhard Morgenstern

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  • 2009 | Journal Article | Research Paper
    ​ ​AUGUSTUS at MediGRID: Adaption of a bioinformatics application to grid computing for efficient genome analysis​
    Sommerfeld, D.; Lingner, T.; Stanke, M.; Morgenstern, B.   & Richter, H.​ (2009) 
    Future Generation Computer Systems, 25(3) pp. 337​-345​.​ DOI: https://doi.org/10.1016/j.future.2008.05.010 
    ​Details  DOI  WoS 
  • 2009 | Conference Abstract
    ​ ​Identification of metabolic changes after wounding in Arabidopsis thaliana by an unbiased UPLC-MS approach​
    Goebel, C.; Feussner, K.; Kaever, A.; Meinicke, P. ; Morgenstern, B.   & Feussner, I.​ (2009)
    Chemistry and Physics of Lipids, 160 ​50th International Conference on Bioscience of Lipids​, Regenburg, GERMANY.
    Clare​: Elsevier Ireland Ltd. DOI: https://doi.org/10.1016/j.chemphyslip.2009.06.024 
    ​Details  DOI  WoS 
  • 2009 | Journal Article
    ​ ​OrthoSelect: a web server for selecting orthologous gene alignments from EST sequences​
    Schreiber, F.; Woerheide, G. & Morgenstern, B. ​ (2009) 
    Nucleic Acids Research, 37 pp. W185​-W188​.​ DOI: https://doi.org/10.1093/nar/gkp434 
    ​Details  DOI  PMID  PMC  WoS 
  • 2009 | Journal Article
    ​ ​jpHMM: Improving the reliability of recombination prediction in HIV-1​
    Schultz, A.-K.; Zhang, M.; Bulla, I.; Leitner, T.; Korber, B.; Morgenstern, B.   & Stanke, M.​ (2009) 
    Nucleic Acids Research, 37 pp. W647​-W651​.​ DOI: https://doi.org/10.1093/nar/gkp371 
    ​Details  DOI  PMID  PMC  WoS 
  • 2009 | Journal Article
    ​ ​Phylogenomics Revives Traditional Views on Deep Animal Relationships​
    Philippe, H.; Derelle, R.; Lopez, P.; Pick, K.; Borchiellini, C.; Boury-Esnault, N. & Vacelet, J. et al.​ (2009) 
    Current Biology, 19(8) pp. 706​-712​.​ DOI: https://doi.org/10.1016/j.cub.2009.02.052 
    ​Details  DOI  PMID  PMC  WoS 
  • 2009 | Journal Article
    ​ ​Rhizobium sp Strain NGR234 Possesses a Remarkable Number of Secretion Systems​
    Schmeisser, C.; Liesegang, H. ; Krysciak, D.; Bakkou, N.; Le Quere, A.; Wollherr, A. & Heinemeyer, I. et al.​ (2009) 
    Applied and Environmental Microbiology, 75(12) pp. 4035​-4045​.​ DOI: https://doi.org/10.1128/AEM.00515-09 
    ​Details  DOI  PMID  PMC  WoS 
  • 2009 | Journal Article | 
    ​ ​OrthoSelect: a protocol for selecting orthologous groups in phylogenomics​
    Schreiber, F.; Pick, K. ; Erpenbeck, D.; Woerheide, G.   & Morgenstern, B. ​ (2009) 
    BMC Bioinformatics, 10 art. 219​.​ DOI: https://doi.org/10.1186/1471-2105-10-219 
    ​Details  DOI  PMID  PMC  WoS 
  • 2008 | Journal Article | 
    ​ ​DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment​
    Subramanian, A. R.; Kaufmann, M. & Morgenstern, B. ​ (2008) 
    Algorithms for molecular biology, 3(6) pp. 1​-11​.​
    ​Details 
  • 2008 | Journal Article | 
    ​ ​Improved coverage of cDNA-AFLP by sequential digestion of immobilized cDNA​
    Weiberg, A.; Poehler, D.; Morgenstern, B.   & Karlovsky, P. ​ (2008) 
    BMC Genomics, 9 art. 480​.​ DOI: https://doi.org/10.1186/1471-2164-9-480 
    ​Details  DOI  PMID  PMC  WoS 
  • 2008 | Journal Article | 
    ​ ​Metabolite-based clustering and visualization of mass spectrometry data using one-dimensional self-organizing maps​
    Meinicke, P. ; Lingner, T.; Kaever, A.; Feussner, K.; Goebel, C.; Feussner, I. & Karlovsky, P.  et al.​ (2008) 
    Algorithms for Molecular Biology, 3 art. 9​.​ DOI: https://doi.org/10.1186/1748-7188-3-9 
    ​Details  DOI  PMID  PMC  WoS 
  • 2008 | Journal Article | 
    ​ ​Stability of multiple alignments and phylogenetic trees: an analysis of ABC-transporter proteins family​
    Wagner, H.; Morgenstern, B.   & Dress, A.​ (2008) 
    Algorithms for Molecular Biology, 3 art. 15​.​ DOI: https://doi.org/10.1186/1748-7188-3-15 
    ​Details  DOI  PMID  PMC  WoS 
  • 2008 | Journal Article | 
    ​ ​Gene prediction in metagenomic fragments: A large scale machine learning approach​
    Hoff, K. J.; Tech, M. ; Lingner, T.; Daniel, R.; Morgenstern, B.   & Meinicke, P. ​ (2008) 
    BMC Bioinformatics, 9 art. 217​.​ DOI: https://doi.org/10.1186/1471-2105-9-217 
    ​Details  DOI  PMID  PMC  WoS 
  • 2007 | Journal Article | 
    ​ ​Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42​
    Chen, X. H.; Koumoutsi, A.; Scholz, R.; Eisenreich, A.; Schneider, K.; Heinemeyer, I. & Morgenstern, B.  et al.​ (2007) 
    Nature Biotechnology, 25(9) pp. 1007​-1014​.​ DOI: https://doi.org/10.1038/nbt1325 
    ​Details  DOI  PMID  PMC  WoS 
  • 2006 | Journal Article | 
    ​ ​AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome​
    Stanke, M.; Tzvetkova, A. & Morgenstern, B. ​ (2006) 
    Genome Biology, 7 art. S11​.​ DOI: https://doi.org/10.1186/gb-2006-7-s1-s11 
    ​Details  DOI  WoS 
  • 2006 | Journal Article | 
    ​ ​AUGUSTUS: ab initio prediction of alternative transcripts​
    Stanke, M.; Keller, O.; Gunduz, I.; Hayes, A.; Waack, S. & Morgenstern, B. ​ (2006) 
    NUCLEIC ACIDS RESEARCH, 34 pp. W435​-W439​.​ DOI: https://doi.org/10.1093/nar/gkl200 
    ​Details  DOI 
  • 2006 | Journal Article | 
    ​ ​jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1​
    Zhang, M.; Schultz, A.-K.; Calef, C.; Kuiken, C.; Leitner, T.; Korber, B. & Morgenstern, B.  et al.​ (2006) 
    NUCLEIC ACIDS RESEARCH, 34 pp. W463​-W465​.​ DOI: https://doi.org/10.1093/nar/gkl255 
    ​Details  DOI 
  • 2006 | Journal Article | 
    ​ ​Multiple sequence alignment with user-defined anchor points​
    Morgenstern, B. ; Prohaska, S. J.; Poehler, D. & Stadler, P. F.​ (2006) 
    Algorithms for Molecular Biology, 1 art. 6​.​ DOI: https://doi.org/10.1186/1748-7188-1-6 
    ​Details  DOI  PMID  PMC  WoS 
  • 2006 | Journal Article | 
    ​ ​A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes​
    Schultz, A.-K.; Zhang, M.; Leitner, T.; Kuiken, C.; Korber, B.; Morgenstern, B.   & Stanke, M.​ (2006) 
    BMC Bioinformatics, 7 art. 265​.​ DOI: https://doi.org/10.1186/1471-2105-7-265 
    ​Details  DOI  PMID  PMC  WoS 
  • 2006 | Journal Article | 
    ​ ​Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources​
    Stanke, M.; Schoffmann, O.; Morgenstern, B.   & Waack, S.​ (2006) 
    BMC Bioinformatics, 7 art. 62​.​ DOI: https://doi.org/10.1186/1471-2105-7-62 
    ​Details  DOI  PMID  PMC  WoS 
  • 2006 | Journal Article | 
    ​ ​TICO: a tool for postprocessing the predictions of prokaryotic translation initiation sites​
    Tech, M. ; Morgenstern, B.   & Meinicke, P. ​ (2006) 
    Nucleic Acids Research, 34 pp. W588​-W590​.​ DOI: https://doi.org/10.1093/nar/gkl313 
    ​Details  DOI  PMID  PMC  WoS 
  • 2006 | Journal Article | Letter Note | 
    ​ ​New journal: Algorithms for molecular biology​
    Morgenstern, B.   & Stadler, P. F.​ (2006) 
    Algorithms for Molecular Biology, 1 art. 1​.​ DOI: https://doi.org/10.1186/1748-7188-1-1 
    ​Details  DOI  PMID  PMC  WoS 
  • 2005 | Journal Article
    ​ ​TICO: a tool for improving predictions of prokaryotic translation initiation sites​
    Tech, M. ; Pfeifer, N.; Morgenstern, B.   & Meinicke, P. ​ (2005) 
    Bioinformatics, 21(17) pp. 3568​-3569​.​ DOI: https://doi.org/10.1093/bioinformatics/bti563 
    ​Details  DOI  PMID  PMC  WoS 
  • 2005 | Journal Article | 
    ​ ​Multiple alignment of genomic sequences using CHAOS, DIALIGN and ABC​
    Pohler, D.; Werner, N.; Steinkamp, R. & Morgenstern, B. ​ (2005) 
    Nucleic Acids Research, 33 pp. W532​-W534​.​ DOI: https://doi.org/10.1093/nar/gki386 
    ​Details  DOI  PMID  PMC  WoS 
  • 2005 | Journal Article | 
    ​ ​AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints​
    Stanke, M. & Morgenstern, B. ​ (2005) 
    Nucleic Acids Research, 33 pp. W465​-W467​.​ DOI: https://doi.org/10.1093/nar/gki458 
    ​Details  DOI  PMID  PMC  WoS 
  • 2005 | Journal Article | 
    ​ ​DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment​
    Subramanian, A. R.; Weyer-Menkhoff, J.; Kaufmann, M. & Morgenstern, B. ​ (2005) 
    BMC Bioinformatics, 6 art. 66​.​ DOI: https://doi.org/10.1186/1471-2105-6-66 
    ​Details  DOI  PMID  PMC  WoS 
  • 2005 | Journal Article
    ​ ​Multiple sequence alignment with user-defined constraints at GOBICS​
    Morgenstern, B. ; Werner, N.; Prohaska, S. J.; Steinkamp, R.; Schneider, I.; Subramanian, A. R. & Stadler, P. F. et al.​ (2005) 
    Bioinformatics, 21(7) pp. 1271​-1273​.​ DOI: https://doi.org/10.1093/bioinformatics/bti142 
    ​Details  DOI  PMID  PMC  WoS 
  • 2004 | Conference Abstract
    ​ ​The DIALIGN multiple alignment program: Recent developments and applications​
    Morgenstern, B. ​ (2004)
    CLADISTICS-THE INTERNATIONAL JOURNAL OF THE WILLI HENNIG SOCIETY, 20(1) pp. 89​-90. ​22nd Annual Meeting of the Willi-Hennig-Society​, New York Botan Garden, Bronx, NY.
    London​: Academic Press Ltd Elsevier Science Ltd.
    ​Details  WoS 
  • 2004 | Journal Article | 
    ​ ​The CHAOS/DIALIGN WWW server for multiple alignment of genomic sequences​
    Brudno, M.; Steinkamp, R. & Morgenstern, B. ​ (2004) 
    Nucleic Acids Research, 32 pp. W41​-W44​.​ DOI: https://doi.org/10.1093/nar/gkh361 
    ​Details  DOI  PMID  PMC  WoS 
  • 2004 | Journal Article | 
    ​ ​DIALIGN: multiple DNA and protein sequence alignment at BiBiServ​
    Morgenstern, B. ​ (2004) 
    Nucleic Acids Research, 32 pp. W33​-W36​.​ DOI: https://doi.org/10.1093/nar/gkh373 
    ​Details  DOI  PMID  PMC  WoS 
  • 2004 | Journal Article | 
    ​ ​DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors​
    Schmollinger, M.; Nieselt, K.; Kaufmann, M. & Morgenstern, B. ​ (2004) 
    BMC Bioinformatics, 5 art. 128​.​ DOI: https://doi.org/10.1186/1471-2105-5-128 
    ​Details  DOI  PMID  PMC  WoS 
  • 2004 | Journal Article | 
    ​ ​AUGUSTUS: a web server for gene finding in eukaryotes​
    Stanke, M.; Steinkamp, R.; Waack, S. & Morgenstern, B. ​ (2004) 
    Nucleic Acids Research, 32 pp. W309​-W312​.​ DOI: https://doi.org/10.1093/nar/gkh379 
    ​Details  DOI  PMID  PMC  WoS 
  • 2004 | Journal Article | 
    ​ ​AGenDA: gene prediction by cross-species sequence comparison​
    Taher, L.; Rinner, O.; Garg, S.; Sczyrba, A. & Morgenstern, B. ​ (2004) 
    Nucleic Acids Research, 32 pp. W305​-W308​.​ DOI: https://doi.org/10.1093/nar/gkh386 
    ​Details  DOI  PMID  PMC  WoS 
  • 2004 | Journal Article | 
    ​ ​Oligo kernels for datamining on biological sequences: a case study on prokaryotic translation initiation sites​
    Meinicke, P. ; Tech, M. ; Morgenstern, B.   & Merkl, R.​ (2004) 
    BMC Bioinformatics, 5 art. 169​.​ DOI: https://doi.org/10.1186/1471-2105-5-169 
    ​Details  DOI  PMID  PMC  WoS 
  • 2003 | Journal Article
    ​ ​AGenDA: homology-based gene prediction​
    Taher, L.; Rinner, O.; Garg, S.; Sczyrba, A.; Brudno, M.; Batzoglou, S. & Morgenstern, B. ​ (2003) 
    Bioinformatics, 19(12) pp. 1575​-1577​.​ DOI: https://doi.org/10.1093/bioinformatics/btg181 
    ​Details  DOI  PMID  PMC  WoS 
  • 2003 | Journal Article | 
    ​ ​Fast and sensitive multiple alignment of large genomic sequences​
    Brudno, M.; Chapman, M. A.; Gottgens, B.; Batzoglou, S. & Morgenstern, B. ​ (2003) 
    BMC Bioinformatics, 4 art. 66​.​ DOI: https://doi.org/10.1186/1471-2105-4-66 
    ​Details  DOI  PMID  PMC  WoS 
  • 2003 | Journal Article
    ​ ​Divide-and-conquer multiple alignment with segment-based constraints​
    Sammeth, M.; Morgenstern, B.   & Stoye, J.​ (2003) 
    Bioinformatics, 19 pp. II189​-II195​.​ DOI: https://doi.org/10.1093/bioinformatics/btg1077 
    ​Details  DOI  PMID  PMC  WoS 
  • 2002 | Journal Article | 
    ​ ​MIPS: a database for genomes and protein sequences.​
    Mewes, H. W.; Frishman, D.; Güldener, U.; Mannhaupt, G.; Mayer, K.; Mokrejs, M. & Morgenstern, B.  et al.​ (2002) 
    NUCLEIC ACIDS RESEARCH, 30(1) pp. 31​-34​.​
    ​Details 

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