Prof. Dr. Burkhard Morgenstern

 
Staff Status
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  • 2021 Journal Article
    ​ Genome and Methylome analysis of a phylogenetic novel Campylobacter coli cluster with C. jejuni introgression
    Dieckmann, A.-L.; Riedel, T.; Bunk, B.; Spröer, C.; Overmann, J.; Groß, U. & Bader, O. et al. (2021) 
    Microbial Genomics7(10).​
    Details  DOI 
  • 2021 Journal Article | Original Work | 
    ​ S-conLSH: alignment-free gapped mapping of noisy long reads
    Chakraborty, A.; Morgenstern, B.   & Bandyopadhyay, S. (2021) 
    BMC Bioinformatics22(1).​
    Details  DOI 
  • 2021 Journal Article | Original Work | 
    ​ A 20‐kb lineage‐specific genomic region tames virulence in pathogenic amphidiploid Verticillium longisporum
    Harting, R.; Starke, J.; Kusch, H. ; Pöggeler, S.; Maurus, I.; Schlüter, R. & Landesfeind, M. et al. (2021) 
    Molecular Plant Pathology,.​
    Details  DOI 
  • 2020 Preprint
    ​ V. longisporum elicits media-dependent secretome responses with a further capacity to distinguish between plant-related environments
    Leonard, M.; Kühn, A.; Harting, R.; Maurus, I.; Nagel, A.; Starke, J.& Kusch, H.  et al. (2020)
    Details  DOI 
  • 2020 Journal Article
    ​ Smash++: an alignment-free and memory-efficient tool to find genomic rearrangements
    Hosseini, M.; Pratas, D.; Morgenstern, B.   & Pinho, A. J (2020) 
    GigaScience9(5).​
    Details  DOI 
  • 2020 Journal Article | 
    ​ Verticillium longisporum Elicits Media-Dependent Secretome Responses With Capacity to Distinguish Between Plant-Related Environments
    Leonard, M.; Kühn, A.; Harting, R.; Maurus, I.; Nagel, A.; Starke, J. & Kusch, H.  et al. (2020) 
    Frontiers in Microbiology11.​
    Details  DOI 
  • 2020 Journal Article | 
    ​ The number of k-mer matches between two DNA sequences as a function of k and applications to estimate phylogenetic distances
    Röhling, S.; Linne, A.; Schellhorn, J. ; Hosseini, M.; Dencker, T. & Morgenstern, B.  (2020) 
    PLoS One15(2) pp. e0228070.​
    Details  DOI 
  • 2019 Journal Article | 
    ​ Benchmarking of alignment-free sequence comparison methods
    Zielezinski, A.; Girgis, H. Z.; Bernard, G.; Leimeister, C.-A.; Tang, K.; Dencker, T. & Lau, A. K. et al. (2019) 
    Genome Biology20(1).​
    Details  DOI 
  • 2019 Journal Article | 
    ​ Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage
    Lau, A.-K.; Dörrer, S.; Leimeister, C.-A.; Bleidorn, C. & Morgenstern, B.  (2019) 
    BMC Bioinformatics20(Suppl 20) art. 638.​
    Details  DOI  PMID  PMC 
  • 2018 Journal Article
    ​ Accurate multiple alignment of distantly related genome sequences using filtered spaced word matches as anchor points
    Leimeister, C.-A.; Dencker, T. & Morgenstern, B.  (2018) 
    Bioinformatics35(2) pp. 211-218.​
    Details  DOI 
  • 2018 Journal Article
    ​ Prot-SpaM: fast alignment-free phylogeny reconstruction based on whole-proteome sequences
    Leimeister, C.-A.; Schellhorn, J. ; Dörrer, S.; Gerth, M.; Bleidorn, C.   & Morgenstern, B.  (2018) 
    GigaScience8(3).​
    Details  DOI 
  • 2017 Journal Article | 
    ​ Phylogeny reconstruction based on the length distribution of k-mismatch common substrings
    Morgenstern, B. ; Schöbel, S. & Leimeister, C.-A. (2017) 
    Algorithms for Molecular Biology12(1) art. 27.​
    Details  DOI 
  • 2017 Journal Article | 
    ​ Fast and accurate phylogeny reconstruction using filtered spaced-word matches
    Leimeister, C.-A.; Sohrabi-Jahromi, S. & Morgenstern, B.  (2017) 
    Bioinformatics33(7) pp. 971-979.​
    Details  DOI  PMID  PMC  WoS 
  • 2016 Journal Article | 
    ​ rasbhari: Optimizing Spaced Seeds for Database Searching, Read Mapping and Alignment-Free Sequence Comparison
    Hahn, L.; Leimeister, C.-A.; Ounit, R.; Lonardi, S. & Morgenstern, B.  (2016) 
    PLoS Computational Biology12(10) art. e1005107.​
    Details  DOI  PMID  PMC  WoS 
  • 2015 Journal Article | Original Work | 
    ​ The iBeetle large-scale RNAi screen reveals gene functions for insect development and physiology
    Schmitt-Engel, C.; Schultheis, D.; Schwirz, J.; Stroehlein, N.; Troelenberg, N.; Majumdar, U. & Dao, V. A. et al. (2015) 
    Nature Communications6 art. 7822.​
    Details  DOI  PMID  PMC  WoS 
  • 2015 Journal Article | 
    ​ Estimating evolutionary distances between genomic sequences from spaced-word matches
    Morgenstern, B. ; Zhu, B.; Horwege, S. & Leimeister, C. A. (2015) 
    Algorithms for Molecular Biology10 art. x.​
    Details  DOI  PMID  PMC  WoS 
  • 2015 Journal Article | 
    ​ MarVis-Pathway: integrative and exploratory pathway analysis of non-targeted metabolomics data
    Kaever, A.; Landesfeind, M.; Feussner, K.; Mosblech, A.; Heilmann, I.; Morgenstern, B.   & Feussner, I. et al. (2015) 
    Metabolomics11(3) pp. 764-777.​
    Details  DOI  WoS 
  • 2014 Journal Article | 
    ​ Spaced words and kmacs: fast alignment-free sequence comparison based on inexact word matches
    Horwege, S.; Lindner, S.; Boden, M.; Hatje, K.; Kollmar, M.; Leimeister, C.-A. & Morgenstern, B.  (2014) 
    Nucleic Acids Research42(W1) pp. W7-W11.​
    Details  DOI  PMID  PMC  WoS 
  • 2014 Journal Article | 
    ​ Fast alignment-free sequence comparison using spaced-word frequencies
    Leimeister, C.-A.; Boden, M.; Horwege, S.; Lindner, S. & Morgenstern, B.  (2014) 
    Bioinformatics30(14) pp. 1991-1999.​
    Details  DOI  PMID  PMC  WoS 
  • 2014 Journal Article
    ​ kmacs: the k-mismatch average common substring approach to alignment-free sequence comparison
    Leimeister, C.-A. & Morgenstern, B.  (2014) 
    Bioinformatics30(14) pp. 2000-2008.​
    Details  DOI  PMID  PMC  WoS 
  • 2014 Journal Article | 
    ​ Meta-Analysis of Pathway Enrichment: Combining Independent and Dependent Omics Data Sets
    Kaever, A.; Landesfeind, M.; Feussner, K.; Morgenstern, B. ; Feussner, I. & Meinicke, P.  (2014) 
    PLoS ONE9(2) art. e89297.​
    Details  DOI  PMID  PMC  WoS 
  • 2013 Journal Article | 
    ​ DIALIGN at GOBICS-multiple sequence alignment using various sources of external information
    Al Ait, L.; Yamak, Z. & Morgenstern, B.  (2013) 
    Nucleic Acids Research41(W1) pp. W3-W7.​
    Details  DOI  PMID  PMC  WoS 
  • 2013 Conference Proceedings
    ​ German Conference on Bioinformatics 2013
    Beißbarth, T. ; Kollmar, M. ; Leha, A. ; Morgenstern, B. ; Schultz, A.-K.; Waack, S.  & Wingender, E.  (Eds.) (2013)
    German Conference on Bioinformatics 2013, Göttingen.
    Details 
  • 2012 Journal Article | 
    ​ jpHMM: recombination analysis in viruses with circular genomes such as the hepatitis B virus
    Schultz, A.-K.; Bulla, I.; Abdou-Chekaraou, M.; Gordien, E.; Morgenstern, B. ; Zoulim, F. & Deny, P. et al. (2012) 
    Nucleic Acids Research40(W1) pp. W193-W198.​
    Details  DOI  PMID  PMC  WoS 
  • 2011 Journal Article | 
    ​ MolabIS - An integrated information system for storing and managing molecular genetics data
    Truong, C. V. C.; Groeneveld, L. F.; Morgenstern, B.   & Groeneveld, E. (2011) 
    BMC Bioinformatics12 art. 425.​
    Details  DOI  PMID  PMC  WoS 
  • 2011 Journal Article | 
    ​ Detection of viral sequence fragments of HIV-1 subfamilies yet unknown
    Unterthiner, T.; Schultz, A.-K.; Bulla, J.; Morgenstern, B. ; Stanke, M. & Bulla, I. (2011) 
    BMC Bioinformatics12 art. 93.​
    Details  DOI  PMID  PMC  WoS 
  • 2011 Journal Article
    ​ 5 ' TRU: Identification and Analysis of Translationally Regulative 5 ' Untranslated Regions in Amino Acid Starved Yeast Cells
    Rachfall, N.; Heinemeyer, I.; Morgenstern, B. ; Valerius, O. & Braus, G. H. (2011) 
    Molecular & Cellular Proteomics10(6).​
    Details  DOI  WoS 
  • 2011 Journal Article
    ​ Identification of Novel Plant Peroxisomal Targeting Signals by a Combination of Machine Learning Methods and in Vivo Subcellular Targeting Analyses
    Lingner, T.; Kataya, A. R.; Antonicelli, G. E.; Benichou, A.; Nilssen, K.; Chen, X.-Y. & Siemsen, T. et al. (2011) 
    The Plant Cell23(4) pp. 1556-1572.​
    Details  DOI  PMID  PMC  WoS 
  • 2010 Journal Article | 
    ​ The role of recombination in the emergence of a complex and dynamic HIV epidemic
    Zhang, M.; Foley, B.; Schultz, A.-K.; Macke, J. P.; Bulla, I.; Stanke, M. & Morgenstern, B.  et al. (2010) 
    Retrovirology7(25)-15.​
    Details  DOI 
  • 2010 Journal Article
    ​ Improved Phylogenomic Taxon Sampling Noticeably Affects Nonbilaterian Relationships
    Pick, K.; Philippe, H.; Schreiber, F.; Erpenbeck, D.; Jackson, D. J. ; Wrede, P. & Wiens, M. et al. (2010) 
    Molecular Biology and Evolution27(9) pp. 1983-1987.​
    Details  DOI  PMID  PMC  WoS 
  • 2010 Journal Article
    ​ jpHMM: improving the reliability of recombination prediction in HIV-1
    Schultz, A.-K.; Zhang, M.; Bulla, I.; Leitner, T.; Korber, B.; Morgenstern, B.   & Stanke, M. (2010) 
    Nucleic Acids Research38(3) pp. 1059-1059.​
    Details  DOI 
  • 2010 Journal Article
    ​ HIV classification using the coalescent theory
    Bulla, I.; Schultz, A.-K.; Schreiber, F.; Zhang, M.; Leitner, T.; Korber, B. & Morgenstern, B.  et al. (2010) 
    Bioinformatics26(11) pp. 1409-1415.​
    Details  DOI  PMID  PMC  WoS 
  • 2010 Journal Article
    ​ A min-cut algorithm for the consistency problem in multiple sequence alignment
    Corel, E.; Pitschi, F. & Morgenstern, B.  (2010) 
    Bioinformatics26(8) pp. 1015-1021.​
    Details  DOI  PMID  PMC  WoS 
  • 2010 Journal Article | 
    ​ DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS
    Subramanian, A. R.; Hiran, S.; Steinkamp, R.; Meinicke, P. ; Corel, E. & Morgenstern, B.  (2010) 
    Nucleic Acids Research38 pp. W19-W22.​
    Details  DOI  PMID  PMC  WoS 
  • 2009 Journal Article | Original Work
    ​ AUGUSTUS at MediGRID: Adaption of a bioinformatics application to grid computing for efficient genome analysis
    Sommerfeld, D.; Lingner, T.; Stanke, M.; Morgenstern, B.   & Richter, H. (2009) 
    Future Generation Computer Systems25(3) pp. 337-345.​
    Details  DOI  WoS 
  • 2009 Journal Article | 
    ​ OrthoSelect: a protocol for selecting orthologous groups in phylogenomics
    Schreiber, F.; Pick, K. ; Erpenbeck, D.; Woerheide, G.   & Morgenstern, B.  (2009) 
    BMC Bioinformatics10 art. 219.​
    Details  DOI  PMID  PMC  WoS 
  • 2009 Journal Article
    ​ Rhizobium sp Strain NGR234 Possesses a Remarkable Number of Secretion Systems
    Schmeisser, C.; Liesegang, H. ; Krysciak, D.; Bakkou, N.; Le Quere, A.; Wollherr, A. & Heinemeyer, I. et al. (2009) 
    Applied and Environmental Microbiology75(12) pp. 4035-4045.​
    Details  DOI  PMID  PMC  WoS 
  • 2009 Journal Article
    ​ Phylogenomics Revives Traditional Views on Deep Animal Relationships
    Philippe, H.; Derelle, R.; Lopez, P.; Pick, K.; Borchiellini, C.; Boury-Esnault, N. & Vacelet, J. et al. (2009) 
    Current Biology19(8) pp. 706-712.​
    Details  DOI  PMID  PMC  WoS 
  • 2009 Journal Article
    ​ OrthoSelect: a web server for selecting orthologous gene alignments from EST sequences
    Schreiber, F.; Woerheide, G. & Morgenstern, B.  (2009) 
    Nucleic Acids Research37 pp. W185-W188.​
    Details  DOI  PMID  PMC  WoS 
  • 2009 Journal Article
    ​ jpHMM: Improving the reliability of recombination prediction in HIV-1
    Schultz, A.-K.; Zhang, M.; Bulla, I.; Leitner, T.; Korber, B.; Morgenstern, B.   & Stanke, M. (2009) 
    Nucleic Acids Research37 pp. W647-W651.​
    Details  DOI  PMID  PMC  WoS 
  • 2009 Conference Abstract
    ​ Identification of metabolic changes after wounding in Arabidopsis thaliana by an unbiased UPLC-MS approach
    Goebel, C.; Feussner, K.; Kaever, A.; Meinicke, P. ; Morgenstern, B.   & Feussner, I. (2009)
    Chemistry and Physics of Lipids160 50th International Conference on Bioscience of Lipids, Regenburg, GERMANY.
    Clare: Elsevier Ireland Ltd.
    Details  DOI  WoS 
  • 2008 Journal Article | 
    ​ DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment
    Subramanian, A. R.; Kaufmann, M. & Morgenstern, B.  (2008) 
    Algorithms for molecular biology3(6) pp. 1-11.​
    Details 
  • 2008 Journal Article | 
    ​ Stability of multiple alignments and phylogenetic trees: an analysis of ABC-transporter proteins family
    Wagner, H.; Morgenstern, B.   & Dress, A. (2008) 
    Algorithms for Molecular Biology3 art. 15.​
    Details  DOI  PMID  PMC  WoS 
  • 2008 Journal Article | 
    ​ Gene prediction in metagenomic fragments: A large scale machine learning approach
    Hoff, K. J.; Tech, M. ; Lingner, T.; Daniel, R.; Morgenstern, B.   & Meinicke, P.  (2008) 
    BMC Bioinformatics9 art. 217.​
    Details  DOI  PMID  PMC  WoS 
  • 2008 Journal Article | 
    ​ Improved coverage of cDNA-AFLP by sequential digestion of immobilized cDNA
    Weiberg, A.; Poehler, D.; Morgenstern, B.   & Karlovsky, P. (2008) 
    BMC Genomics9 art. 480.​
    Details  DOI  PMID  PMC  WoS 
  • 2008 Journal Article | 
    ​ Metabolite-based clustering and visualization of mass spectrometry data using one-dimensional self-organizing maps
    Meinicke, P. ; Lingner, T.; Kaever, A.; Feussner, K.; Goebel, C.; Feussner, I. & Karlovsky, P. et al. (2008) 
    Algorithms for Molecular Biology3 art. 9.​
    Details  DOI  PMID  PMC  WoS 
  • 2007 Journal Article
    ​ Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42
    Chen, X. H.; Koumoutsi, A.; Scholz, R.; Eisenreich, A.; Schneider, K.; Heinemeyer, I. & Morgenstern, B.  et al. (2007) 
    Nature Biotechnology25(9) pp. 1007-1014.​
    Details  DOI  PMID  PMC  WoS 
  • 2006 Journal Article | 
    ​ A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes
    Schultz, A.-K.; Zhang, M.; Leitner, T.; Kuiken, C.; Korber, B.; Morgenstern, B.   & Stanke, M. (2006) 
    BMC Bioinformatics7 art. 265.​
    Details  DOI  PMID  PMC  WoS 
  • 2006 Journal Article | 
    ​ Multiple sequence alignment with user-defined anchor points
    Morgenstern, B. ; Prohaska, S. J.; Poehler, D. & Stadler, P. F. (2006) 
    Algorithms for Molecular Biology1 art. 6.​
    Details  DOI  PMID  PMC  WoS 
  • 2006 Journal Article | 
    ​ Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
    Stanke, M.; Schoffmann, O.; Morgenstern, B.   & Waack, S. (2006) 
    BMC Bioinformatics7 art. 62.​
    Details  DOI  PMID  PMC  WoS 
  • 2006 Journal Article | 
    ​ AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome
    Stanke, M.; Tzvetkova, A. & Morgenstern, B.  (2006) 
    Genome Biology7 art. S11.​
    Details  DOI  WoS 
  • 2006 Journal Article | 
    ​ AUGUSTUS: ab initio prediction of alternative transcripts
    Stanke, M.; Keller, O.; Gunduz, I.; Hayes, A.; Waack, S. & Morgenstern, B.  (2006) 
    NUCLEIC ACIDS RESEARCH34 pp. W435-W439.​
    Details  DOI 
  • 2006 Journal Article | 
    ​ jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1
    Zhang, M.; Schultz, A.-K.; Calef, C.; Kuiken, C.; Leitner, T.; Korber, B. & Morgenstern, B.  et al. (2006) 
    NUCLEIC ACIDS RESEARCH34 pp. W463-W465.​
    Details  DOI 
  • 2006 Journal Article | 
    ​ New journal: Algorithms for molecular biology
    Morgenstern, B.   & Stadler, P. F. (2006) 
    Algorithms for Molecular Biology1 art. 1.​
    Details  DOI  PMID  PMC  WoS 
  • 2006 Journal Article | 
    ​ TICO: a tool for postprocessing the predictions of prokaryotic translation initiation sites
    Tech, M. ; Morgenstern, B.   & Meinicke, P.  (2006) 
    Nucleic Acids Research34 pp. W588-W590.​
    Details  DOI  PMID  PMC  WoS 
  • 2005 Journal Article | 
    ​ DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment
    Subramanian, A. R.; Weyer-Menkhoff, J.; Kaufmann, M. & Morgenstern, B.  (2005) 
    BMC Bioinformatics6 art. 66.​
    Details  DOI  PMID  PMC  WoS 
  • 2005 Journal Article | 
    ​ AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints
    Stanke, M. & Morgenstern, B.  (2005) 
    Nucleic Acids Research33 pp. W465-W467.​
    Details  DOI  PMID  PMC  WoS 
  • 2005 Journal Article | 
    ​ Multiple alignment of genomic sequences using CHAOS, DIALIGN and ABC
    Pohler, D.; Werner, N.; Steinkamp, R. & Morgenstern, B.  (2005) 
    Nucleic Acids Research33 pp. W532-W534.​
    Details  DOI  PMID  PMC  WoS 
  • 2005 Journal Article
    ​ Multiple sequence alignment with user-defined constraints at GOBICS
    Morgenstern, B. ; Werner, N.; Prohaska, S. J.; Steinkamp, R.; Schneider, I.; Subramanian, A. R. & Stadler, P. F. et al. (2005) 
    Bioinformatics21(7) pp. 1271-1273.​
    Details  DOI  PMID  PMC  WoS 
  • 2005 Journal Article
    ​ TICO: a tool for improving predictions of prokaryotic translation initiation sites
    Tech, M. ; Pfeifer, N.; Morgenstern, B.   & Meinicke, P.  (2005) 
    Bioinformatics21(17) pp. 3568-3569.​
    Details  DOI  PMID  PMC  WoS 
  • 2004 Journal Article | 
    ​ DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors
    Schmollinger, M.; Nieselt, K.; Kaufmann, M. & Morgenstern, B.  (2004) 
    BMC Bioinformatics5 art. 128.​
    Details  DOI  PMID  PMC  WoS 
  • 2004 Journal Article | 
    ​ AUGUSTUS: a web server for gene finding in eukaryotes
    Stanke, M.; Steinkamp, R.; Waack, S. & Morgenstern, B.  (2004) 
    Nucleic Acids Research32 pp. W309-W312.​
    Details  DOI  PMID  PMC  WoS 
  • 2004 Journal Article | 
    ​ The CHAOS/DIALIGN WWW server for multiple alignment of genomic sequences
    Brudno, M.; Steinkamp, R. & Morgenstern, B.  (2004) 
    Nucleic Acids Research32 pp. W41-W44.​
    Details  DOI  PMID  PMC  WoS 
  • 2004 Journal Article | 
    ​ DIALIGN: multiple DNA and protein sequence alignment at BiBiServ
    Morgenstern, B.  (2004) 
    Nucleic Acids Research32 pp. W33-W36.​
    Details  DOI  PMID  PMC  WoS 
  • 2004 Journal Article | 
    ​ AGenDA: gene prediction by cross-species sequence comparison
    Taher, L.; Rinner, O.; Garg, S.; Sczyrba, A. & Morgenstern, B.  (2004) 
    Nucleic Acids Research32 pp. W305-W308.​
    Details  DOI  PMID  PMC  WoS 
  • 2004 Journal Article | 
    ​ Oligo kernels for datamining on biological sequences: a case study on prokaryotic translation initiation sites
    Meinicke, P. ; Tech, M. ; Morgenstern, B.   & Merkl, R. (2004) 
    BMC Bioinformatics5 art. 169.​
    Details  DOI  PMID  PMC  WoS 
  • 2004 Conference Abstract
    ​ The DIALIGN multiple alignment program: Recent developments and applications
    Morgenstern, B.  (2004)
    CLADISTICS-THE INTERNATIONAL JOURNAL OF THE WILLI HENNIG SOCIETY20(1) pp. 89-90. 22nd Annual Meeting of the Willi-Hennig-Society, New York Botan Garden, Bronx, NY.
    London: Academic Press Ltd Elsevier Science Ltd.
    Details  WoS 
  • 2003 Journal Article | 
    ​ Fast and sensitive multiple alignment of large genomic sequences
    Brudno, M.; Chapman, M. A.; Gottgens, B.; Batzoglou, S. & Morgenstern, B.  (2003) 
    BMC Bioinformatics4 art. 66.​
    Details  DOI  PMID  PMC  WoS 
  • 2003 Journal Article
    ​ AGenDA: homology-based gene prediction
    Taher, L.; Rinner, O.; Garg, S.; Sczyrba, A.; Brudno, M.; Batzoglou, S. & Morgenstern, B.  (2003) 
    Bioinformatics19(12) pp. 1575-1577.​
    Details  DOI  PMID  PMC  WoS 
  • 2003 Journal Article
    ​ Divide-and-conquer multiple alignment with segment-based constraints
    Sammeth, M.; Morgenstern, B.   & Stoye, J. (2003) 
    Bioinformatics19 pp. II189-II195.​
    Details  DOI  PMID  PMC  WoS 
  • 2003 Journal Article
    ​ AltAVisT: Comparing alternative multiple sequence alignments
    Morgenstern, B. ; Goel, S.; Sczyrba, A. & Dress, A. (2003) 
    Bioinformatics19(3) pp. 425-426.​
    Details  DOI 
  • 2002 Journal Article | 
    ​ MIPS: a database for genomes and protein sequences.
    Mewes, H. W.; Frishman, D.; Güldener, U.; Mannhaupt, G.; Mayer, K.; Mokrejs, M. & Morgenstern, B.  et al. (2002) 
    NUCLEIC ACIDS RESEARCH30(1) pp. 31-34.​
    Details 
  • 2002 Journal Article
    ​ Exon discovery by genomic sequence alignment
    Morgenstern, B. ; Rinner, O.; Abdeddaim, S.; Haase, D.; Mayer, K. F. X.; Dress, A. W. M. & Mewes, H.-W. (2002) 
    Bioinformatics18(6) pp. 777-787.​
    Details  DOI 
  • 2002 Journal Article
    ​ A simple and space-efficient fragment-chaining algorithm for alignment of DNA and protein sequences
    Morgenstern, B.  (2002) 
    Applied Mathematics Letters15(1) pp. 11-16.​
    Details  DOI 
  • 2001 Journal Article
    ​ The HIB database of annotated UniGene clusters
    Geier, B.; Kastenmuller, G.; Fellenberg, M.; Mewes, H.-W. & Morgenstern, B.  (2001) 
    Bioinformatics17(6) pp. 571-572.​
    Details  DOI 
  • 2000 Journal Article
    ​ A space-efficient algorithm for aligning large genomic sequences
    Morgenstern, B.  (2000) 
    Bioinformatics16(10) pp. 948-949.​
    Details  DOI 
  • 1999 Journal Article
    ​ Evolution of bHLH transcription factors: modular evolution by domain shuffling?
    Morgenstern, B.   & Atchley, W. R. (1999) 
    Molecular Biology and Evolution16(12) pp. 1654-1663.​
    Details  DOI 
  • 1999 Journal Article
    ​ An exact solution for the segment-to-segment multiple sequence alignment problem
    Lenhof, H.; Morgenstern, B.   & Reinert, K. (1999) 
    Bioinformatics15(3) pp. 203-210.​
    Details  DOI 
  • 1999 Journal Article
    ​ DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment
    Morgenstern, B.  (1999) 
    Bioinformatics15(3) pp. 211-218.​
    Details  DOI 
  • 1998 Journal Article
    ​ The number of standard and of effective multiple alignments
    Dress, A.; Morgenstern, B.   & Stoye, J. (1998) 
    Applied Mathematics Letters11(4) pp. 43-49.​
    Details  DOI 
  • 1998 Journal Article
    ​ DIALIGN: finding local similarities by multiple sequence alignment
    Morgenstern, B. ; Frech, K.; Dress, A. & Werner, T. (1998) 
    Bioinformatics14(3) pp. 290-294.​
    Details  DOI 
  • 1996 Journal Article
    ​ Multiple DNA and protein sequence alignment based on segment-to-segment comparison.
    Morgenstern, B. ; Dress, A. & Werner, T. (1996) 
    Proceedings of the National Academy of Sciences93(22) pp. 12098-12103.​
    Details  DOI 

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