Prof. Dr. Burkhard Morgenstern

 
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  • 2022 Journal Article | 
    ​ ​Insertions and deletions as phylogenetic signal in an alignment-free context​
    Birth, N.; Dencker, T. & Morgenstern, B. ​ (2022) 
    PLOS Computational Biology18(8) pp. e1010303​.​ DOI: https://doi.org/10.1371/journal.pcbi.1010303 
    Details  DOI 
  • 2021 Journal Article
    ​ ​Genome and Methylome analysis of a phylogenetic novel Campylobacter coli cluster with C. jejuni introgression​
    Dieckmann, A.-L.; Riedel, T.; Bunk, B.; Spröer, C.; Overmann, J.; Groß, U. & Bader, O. et al.​ (2021) 
    Microbial Genomics7(10).​ DOI: https://doi.org/10.1099/mgen.0.000679 
    Details  DOI 
  • 2021 Journal Article | Research Paper | 
    ​ ​A 20‐kb lineage‐specific genomic region tames virulence in pathogenic amphidiploid Verticillium longisporum​
    Harting, R.; Starke, J.; Kusch, H. ; Pöggeler, S.; Maurus, I.; Schlüter, R. & Landesfeind, M. et al.​ (2021) 
    Molecular Plant Pathology,.​ DOI: https://doi.org/10.1111/mpp.13071 
    Details  DOI 
  • 2020 Preprint
    ​ ​V. longisporum elicits media-dependent secretome responses with a further capacity to distinguish between plant-related environments​
    Leonard, M.; Kühn, A.; Harting, R.; Maurus, I.; Nagel, A.; Starke, J.& Kusch, H.  et al.​ (2020). DOI: https://doi.org/10.1101/2020.02.11.943803 
    Details  DOI 
  • 2020 Journal Article | 
    ​ ​The number of k-mer matches between two DNA sequences as a function of k and applications to estimate phylogenetic distances​
    Röhling, S.; Linne, A.; Schellhorn, J. ; Hosseini, M.; Dencker, T. & Morgenstern, B. ​ (2020) 
    PLoS One15(2) pp. e0228070​.​ DOI: https://doi.org/10.1371/journal.pone.0228070 
    Details  DOI 
  • 2020 Journal Article
    ​ ​Smash++: an alignment-free and memory-efficient tool to find genomic rearrangements​
    Hosseini, M.; Pratas, D.; Morgenstern, B.   & Pinho, A. J​ (2020) 
    GigaScience9(5).​ DOI: https://doi.org/10.1093/gigascience/giaa048 
    Details  DOI 
  • 2020 Journal Article | 
    ​ ​Verticillium longisporum Elicits Media-Dependent Secretome Responses With Capacity to Distinguish Between Plant-Related Environments​
    Leonard, M.; Kühn, A.; Harting, R.; Maurus, I.; Nagel, A.; Starke, J. & Kusch, H.  et al.​ (2020) 
    Frontiers in Microbiology11.​ DOI: https://doi.org/10.3389/fmicb.2020.01876 
    Details  DOI 
  • 2019 Journal Article | 
    ​ ​Benchmarking of alignment-free sequence comparison methods​
    Zielezinski, A.; Girgis, H. Z.; Bernard, G.; Leimeister, C.-A.; Tang, K.; Dencker, T. & Lau, A. K. et al.​ (2019) 
    Genome Biology20(1).​ DOI: https://doi.org/10.1186/s13059-019-1755-7 
    Details  DOI 
  • 2019 Journal Article | 
    ​ ​Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage​
    Lau, A.-K.; Dörrer, S.; Leimeister, C.-A.; Bleidorn, C.   & Morgenstern, B. ​ (2019) 
    BMC Bioinformatics20(Suppl 20) art. 638​.​ DOI: https://doi.org/10.1186/s12859-019-3205-7 
    Details  DOI  PMID  PMC 
  • 2018 Journal Article
    ​ ​Accurate multiple alignment of distantly related genome sequences using filtered spaced word matches as anchor points​
    Leimeister, C.-A.; Dencker, T. & Morgenstern, B. ​ (2018) 
    Bioinformatics35(2) pp. 211​-218​.​ DOI: https://doi.org/10.1093/bioinformatics/bty592 
    Details  DOI 
  • 2018 Journal Article
    ​ ​Prot-SpaM: fast alignment-free phylogeny reconstruction based on whole-proteome sequences​
    Leimeister, C.-A.; Schellhorn, J. ; Dörrer, S.; Gerth, M.; Bleidorn, C.   & Morgenstern, B. ​ (2018) 
    GigaScience8(3).​ DOI: https://doi.org/10.1093/gigascience/giy148 
    Details  DOI 
  • 2017 Journal Article | 
    ​ ​Phylogeny reconstruction based on the length distribution of k-mismatch common substrings​
    Morgenstern, B. ; Schöbel, S. & Leimeister, C.-A.​ (2017) 
    Algorithms for Molecular Biology12(1) art. 27​.​ DOI: https://doi.org/10.1186/s13015-017-0118-8 
    Details  DOI 
  • 2017 Journal Article | 
    ​ ​Fast and accurate phylogeny reconstruction using filtered spaced-word matches​
    Leimeister, C.-A.; Sohrabi-Jahromi, S. & Morgenstern, B. ​ (2017) 
    Bioinformatics33(7) pp. 971​-979​.​ DOI: https://doi.org/10.1093/bioinformatics/btw776 
    Details  DOI  PMID  PMC  WoS 
  • 2016 Journal Article | 
    ​ ​rasbhari: Optimizing Spaced Seeds for Database Searching, Read Mapping and Alignment-Free Sequence Comparison​
    Hahn, L.; Leimeister, C.-A.; Ounit, R.; Lonardi, S. & Morgenstern, B. ​ (2016) 
    PLoS Computational Biology12(10) art. e1005107​.​ DOI: https://doi.org/10.1371/journal.pcbi.1005107 
    Details  DOI  PMID  PMC  WoS 
  • 2015 Journal Article | 
    ​ ​MarVis-Pathway: integrative and exploratory pathway analysis of non-targeted metabolomics data​
    Kaever, A.; Landesfeind, M.; Feussner, K.; Mosblech, A.; Heilmann, I.; Morgenstern, B.   & Feussner, I. et al.​ (2015) 
    Metabolomics11(3) pp. 764​-777​.​ DOI: https://doi.org/10.1007/s11306-014-0734-y 
    Details  DOI  WoS 
  • 2015 Journal Article | Research Paper | 
    ​ ​The iBeetle large-scale RNAi screen reveals gene functions for insect development and physiology​
    Schmitt-Engel, C.; Schultheis, D.; Schwirz, J.; Stroehlein, N.; Troelenberg, N.; Majumdar, U. & Dao, V. A. et al.​ (2015) 
    Nature Communications6 art. 7822​.​ DOI: https://doi.org/10.1038/ncomms8822 
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  • 2015 Journal Article | 
    ​ ​Estimating evolutionary distances between genomic sequences from spaced-word matches​
    Morgenstern, B. ; Zhu, B.; Horwege, S. & Leimeister, C. A.​ (2015) 
    Algorithms for Molecular Biology10 art. x​.​ DOI: https://doi.org/10.1186/s13015-015-0032-x 
    Details  DOI  PMID  PMC  WoS 
  • 2014 Journal Article | 
    ​ ​Meta-Analysis of Pathway Enrichment: Combining Independent and Dependent Omics Data Sets​
    Kaever, A.; Landesfeind, M.; Feussner, K.; Morgenstern, B. ; Feussner, I. & Meinicke, P. ​ (2014) 
    PLoS ONE9(2) art. e89297​.​ DOI: https://doi.org/10.1371/journal.pone.0089297 
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  • 2014 Journal Article | 
    ​ ​Spaced words and kmacs: fast alignment-free sequence comparison based on inexact word matches​
    Horwege, S.; Lindner, S.; Boden, M.; Hatje, K.; Kollmar, M.; Leimeister, C.-A. & Morgenstern, B. ​ (2014) 
    Nucleic Acids Research42(W1) pp. W7​-W11​.​ DOI: https://doi.org/10.1093/nar/gku398 
    Details  DOI  PMID  PMC  WoS 
  • 2014 Journal Article
    ​ ​kmacs: the k-mismatch average common substring approach to alignment-free sequence comparison​
    Leimeister, C.-A. & Morgenstern, B. ​ (2014) 
    Bioinformatics30(14) pp. 2000​-2008​.​ DOI: https://doi.org/10.1093/bioinformatics/btu331 
    Details  DOI  PMID  PMC  WoS 
  • 2014 Journal Article | 
    ​ ​Fast alignment-free sequence comparison using spaced-word frequencies​
    Leimeister, C.-A.; Boden, M.; Horwege, S.; Lindner, S. & Morgenstern, B. ​ (2014) 
    Bioinformatics30(14) pp. 1991​-1999​.​ DOI: https://doi.org/10.1093/bioinformatics/btu177 
    Details  DOI  PMID  PMC  WoS 
  • 2013 Conference Proceedings
    ​ ​German Conference on Bioinformatics 2013​
    Beißbarth, T. ; Kollmar, M. ; Leha, A. ; Morgenstern, B. ; Schultz, A.-K.; Waack, S.  & Wingender, E. ​ (Eds.) (2013)
    German Conference on Bioinformatics 2013​, Göttingen.
    Details 
  • 2013 Journal Article | 
    ​ ​DIALIGN at GOBICS-multiple sequence alignment using various sources of external information​
    Al Ait, L.; Yamak, Z. & Morgenstern, B. ​ (2013) 
    Nucleic Acids Research41(W1) pp. W3​-W7​.​ DOI: https://doi.org/10.1093/nar/gkt283 
    Details  DOI  PMID  PMC  WoS 
  • 2012 Journal Article | 
    ​ ​jpHMM: recombination analysis in viruses with circular genomes such as the hepatitis B virus​
    Schultz, A.-K.; Bulla, I.; Abdou-Chekaraou, M.; Gordien, E.; Morgenstern, B. ; Zoulim, F. & Deny, P. et al.​ (2012) 
    Nucleic Acids Research40(W1) pp. W193​-W198​.​ DOI: https://doi.org/10.1093/nar/gks414 
    Details  DOI  PMID  PMC  WoS 
  • 2011 Journal Article
    ​ ​5 ' TRU: Identification and Analysis of Translationally Regulative 5 ' Untranslated Regions in Amino Acid Starved Yeast Cells​
    Rachfall, N.; Heinemeyer, I.; Morgenstern, B. ; Valerius, O. & Braus, G. H.​ (2011) 
    Molecular & Cellular Proteomics10(6).​ DOI: https://doi.org/10.1074/mcp.M110.003350 
    Details  DOI  WoS 
  • 2011 Journal Article
    ​ ​Identification of Novel Plant Peroxisomal Targeting Signals by a Combination of Machine Learning Methods and in Vivo Subcellular Targeting Analyses​
    Lingner, T.; Kataya, A. R.; Antonicelli, G. E.; Benichou, A.; Nilssen, K.; Chen, X.-Y. & Siemsen, T. et al.​ (2011) 
    The Plant Cell23(4) pp. 1556​-1572​.​ DOI: https://doi.org/10.1105/tpc.111.084095 
    Details  DOI  PMID  PMC  WoS 
  • 2011 Journal Article | 
    ​ ​Detection of viral sequence fragments of HIV-1 subfamilies yet unknown​
    Unterthiner, T.; Schultz, A.-K.; Bulla, J.; Morgenstern, B. ; Stanke, M. & Bulla, I.​ (2011) 
    BMC Bioinformatics12 art. 93​.​ DOI: https://doi.org/10.1186/1471-2105-12-93 
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  • 2011 Journal Article | 
    ​ ​MolabIS - An integrated information system for storing and managing molecular genetics data​
    Truong, C. V. C.; Groeneveld, L. F.; Morgenstern, B.   & Groeneveld, E.​ (2011) 
    BMC Bioinformatics12 art. 425​.​ DOI: https://doi.org/10.1186/1471-2105-12-425 
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  • 2010 Journal Article
    ​ ​jpHMM: improving the reliability of recombination prediction in HIV-1​
    Schultz, A.-K.; Zhang, M.; Bulla, I.; Leitner, T.; Korber, B.; Morgenstern, B.   & Stanke, M.​ (2010) 
    Nucleic Acids Research38(3) pp. 1059​-1059​.​ DOI: https://doi.org/10.1093/nar/gkq015 
    Details  DOI 
  • 2010 Journal Article | 
    ​ ​The role of recombination in the emergence of a complex and dynamic HIV epidemic​
    Zhang, M.; Foley, B.; Schultz, A.-K.; Macke, J. P.; Bulla, I.; Stanke, M. & Morgenstern, B.  et al.​ (2010) 
    Retrovirology7(25)-15​.​ DOI: https://doi.org/10.1186/1742-4690-7-25 
    Details  DOI 
  • 2010 Journal Article
    ​ ​HIV classification using the coalescent theory​
    Bulla, I.; Schultz, A.-K.; Schreiber, F.; Zhang, M.; Leitner, T.; Korber, B. & Morgenstern, B.  et al.​ (2010) 
    Bioinformatics26(11) pp. 1409​-1415​.​ DOI: https://doi.org/10.1093/bioinformatics/btq159 
    Details  DOI  PMID  PMC  WoS 
  • 2010 Journal Article
    ​ ​A min-cut algorithm for the consistency problem in multiple sequence alignment​
    Corel, E.; Pitschi, F. & Morgenstern, B. ​ (2010) 
    Bioinformatics26(8) pp. 1015​-1021​.​ DOI: https://doi.org/10.1093/bioinformatics/btq082 
    Details  DOI  PMID  PMC  WoS 
  • 2010 Journal Article
    ​ ​Improved Phylogenomic Taxon Sampling Noticeably Affects Nonbilaterian Relationships​
    Pick, K.; Philippe, H.; Schreiber, F.; Erpenbeck, D.; Jackson, D. J. ; Wrede, P. & Wiens, M. et al.​ (2010) 
    Molecular Biology and Evolution27(9) pp. 1983​-1987​.​ DOI: https://doi.org/10.1093/molbev/msq089 
    Details  DOI  PMID  PMC  WoS 
  • 2010 Journal Article | 
    ​ ​DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS​
    Subramanian, A. R.; Hiran, S.; Steinkamp, R.; Meinicke, P. ; Corel, E. & Morgenstern, B. ​ (2010) 
    Nucleic Acids Research38 pp. W19​-W22​.​ DOI: https://doi.org/10.1093/nar/gkq442 
    Details  DOI  PMID  PMC  WoS 
  • 2009 Journal Article | Research Paper
    ​ ​AUGUSTUS at MediGRID: Adaption of a bioinformatics application to grid computing for efficient genome analysis​
    Sommerfeld, D.; Lingner, T.; Stanke, M.; Morgenstern, B.   & Richter, H.​ (2009) 
    Future Generation Computer Systems25(3) pp. 337​-345​.​ DOI: https://doi.org/10.1016/j.future.2008.05.010 
    Details  DOI  WoS 
  • 2009 Conference Abstract
    ​ ​Identification of metabolic changes after wounding in Arabidopsis thaliana by an unbiased UPLC-MS approach​
    Goebel, C.; Feussner, K.; Kaever, A.; Meinicke, P. ; Morgenstern, B.   & Feussner, I.​ (2009)
    Chemistry and Physics of Lipids160 ​50th International Conference on Bioscience of Lipids​, Regenburg, GERMANY.
    Clare​: Elsevier Ireland Ltd. DOI: https://doi.org/10.1016/j.chemphyslip.2009.06.024 
    Details  DOI  WoS 
  • 2009 Journal Article
    ​ ​Rhizobium sp Strain NGR234 Possesses a Remarkable Number of Secretion Systems​
    Schmeisser, C.; Liesegang, H. ; Krysciak, D.; Bakkou, N.; Le Quere, A.; Wollherr, A. & Heinemeyer, I. et al.​ (2009) 
    Applied and Environmental Microbiology75(12) pp. 4035​-4045​.​ DOI: https://doi.org/10.1128/AEM.00515-09 
    Details  DOI  PMID  PMC  WoS 
  • 2009 Journal Article
    ​ ​OrthoSelect: a web server for selecting orthologous gene alignments from EST sequences​
    Schreiber, F.; Woerheide, G. & Morgenstern, B. ​ (2009) 
    Nucleic Acids Research37 pp. W185​-W188​.​ DOI: https://doi.org/10.1093/nar/gkp434 
    Details  DOI  PMID  PMC  WoS 
  • 2009 Journal Article
    ​ ​jpHMM: Improving the reliability of recombination prediction in HIV-1​
    Schultz, A.-K.; Zhang, M.; Bulla, I.; Leitner, T.; Korber, B.; Morgenstern, B.   & Stanke, M.​ (2009) 
    Nucleic Acids Research37 pp. W647​-W651​.​ DOI: https://doi.org/10.1093/nar/gkp371 
    Details  DOI  PMID  PMC  WoS 
  • 2009 Journal Article
    ​ ​Phylogenomics Revives Traditional Views on Deep Animal Relationships​
    Philippe, H.; Derelle, R.; Lopez, P.; Pick, K.; Borchiellini, C.; Boury-Esnault, N. & Vacelet, J. et al.​ (2009) 
    Current Biology19(8) pp. 706​-712​.​ DOI: https://doi.org/10.1016/j.cub.2009.02.052 
    Details  DOI  PMID  PMC  WoS 
  • 2009 Journal Article | 
    ​ ​OrthoSelect: a protocol for selecting orthologous groups in phylogenomics​
    Schreiber, F.; Pick, K. ; Erpenbeck, D.; Woerheide, G.   & Morgenstern, B. ​ (2009) 
    BMC Bioinformatics10 art. 219​.​ DOI: https://doi.org/10.1186/1471-2105-10-219 
    Details  DOI  PMID  PMC  WoS 
  • 2008 Journal Article | 
    ​ ​DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment​
    Subramanian, A. R.; Kaufmann, M. & Morgenstern, B. ​ (2008) 
    Algorithms for molecular biology3(6) pp. 1​-11​.​
    Details 
  • 2008 Journal Article | 
    ​ ​Stability of multiple alignments and phylogenetic trees: an analysis of ABC-transporter proteins family​
    Wagner, H.; Morgenstern, B.   & Dress, A.​ (2008) 
    Algorithms for Molecular Biology3 art. 15​.​ DOI: https://doi.org/10.1186/1748-7188-3-15 
    Details  DOI  PMID  PMC  WoS 
  • 2008 Journal Article | 
    ​ ​Gene prediction in metagenomic fragments: A large scale machine learning approach​
    Hoff, K. J.; Tech, M. ; Lingner, T.; Daniel, R.; Morgenstern, B.   & Meinicke, P. ​ (2008) 
    BMC Bioinformatics9 art. 217​.​ DOI: https://doi.org/10.1186/1471-2105-9-217 
    Details  DOI  PMID  PMC  WoS 
  • 2008 Journal Article | 
    ​ ​Metabolite-based clustering and visualization of mass spectrometry data using one-dimensional self-organizing maps​
    Meinicke, P. ; Lingner, T.; Kaever, A.; Feussner, K.; Goebel, C.; Feussner, I. & Karlovsky, P.  et al.​ (2008) 
    Algorithms for Molecular Biology3 art. 9​.​ DOI: https://doi.org/10.1186/1748-7188-3-9 
    Details  DOI  PMID  PMC  WoS 
  • 2008 Journal Article | 
    ​ ​Improved coverage of cDNA-AFLP by sequential digestion of immobilized cDNA​
    Weiberg, A.; Poehler, D.; Morgenstern, B.   & Karlovsky, P. ​ (2008) 
    BMC Genomics9 art. 480​.​ DOI: https://doi.org/10.1186/1471-2164-9-480 
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  • 2007 Journal Article | 
    ​ ​Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42​
    Chen, X. H.; Koumoutsi, A.; Scholz, R.; Eisenreich, A.; Schneider, K.; Heinemeyer, I. & Morgenstern, B.  et al.​ (2007) 
    Nature Biotechnology25(9) pp. 1007​-1014​.​ DOI: https://doi.org/10.1038/nbt1325 
    Details  DOI  PMID  PMC  WoS 
  • 2006 Journal Article | 
    ​ ​AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome​
    Stanke, M.; Tzvetkova, A. & Morgenstern, B. ​ (2006) 
    Genome Biology7 art. S11​.​ DOI: https://doi.org/10.1186/gb-2006-7-s1-s11 
    Details  DOI  WoS 
  • 2006 Journal Article | 
    ​ ​jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1​
    Zhang, M.; Schultz, A.-K.; Calef, C.; Kuiken, C.; Leitner, T.; Korber, B. & Morgenstern, B.  et al.​ (2006) 
    NUCLEIC ACIDS RESEARCH34 pp. W463​-W465​.​ DOI: https://doi.org/10.1093/nar/gkl255 
    Details  DOI 
  • 2006 Journal Article | 
    ​ ​AUGUSTUS: ab initio prediction of alternative transcripts​
    Stanke, M.; Keller, O.; Gunduz, I.; Hayes, A.; Waack, S. & Morgenstern, B. ​ (2006) 
    NUCLEIC ACIDS RESEARCH34 pp. W435​-W439​.​ DOI: https://doi.org/10.1093/nar/gkl200 
    Details  DOI 
  • 2006 Journal Article | 
    ​ ​A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes​
    Schultz, A.-K.; Zhang, M.; Leitner, T.; Kuiken, C.; Korber, B.; Morgenstern, B.   & Stanke, M.​ (2006) 
    BMC Bioinformatics7 art. 265​.​ DOI: https://doi.org/10.1186/1471-2105-7-265 
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  • 2006 Journal Article | 
    ​ ​TICO: a tool for postprocessing the predictions of prokaryotic translation initiation sites​
    Tech, M. ; Morgenstern, B.   & Meinicke, P. ​ (2006) 
    Nucleic Acids Research34 pp. W588​-W590​.​ DOI: https://doi.org/10.1093/nar/gkl313 
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  • 2006 Journal Article | 
    ​ ​Multiple sequence alignment with user-defined anchor points​
    Morgenstern, B. ; Prohaska, S. J.; Poehler, D. & Stadler, P. F.​ (2006) 
    Algorithms for Molecular Biology1 art. 6​.​ DOI: https://doi.org/10.1186/1748-7188-1-6 
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  • 2006 Journal Article | Letter Note | 
    ​ ​New journal: Algorithms for molecular biology​
    Morgenstern, B.   & Stadler, P. F.​ (2006) 
    Algorithms for Molecular Biology1 art. 1​.​ DOI: https://doi.org/10.1186/1748-7188-1-1 
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  • 2006 Journal Article | 
    ​ ​Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources​
    Stanke, M.; Schoffmann, O.; Morgenstern, B.   & Waack, S.​ (2006) 
    BMC Bioinformatics7 art. 62​.​ DOI: https://doi.org/10.1186/1471-2105-7-62 
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  • 2005 Journal Article | 
    ​ ​DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment​
    Subramanian, A. R.; Weyer-Menkhoff, J.; Kaufmann, M. & Morgenstern, B. ​ (2005) 
    BMC Bioinformatics6 art. 66​.​ DOI: https://doi.org/10.1186/1471-2105-6-66 
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  • 2005 Journal Article | 
    ​ ​AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints​
    Stanke, M. & Morgenstern, B. ​ (2005) 
    Nucleic Acids Research33 pp. W465​-W467​.​ DOI: https://doi.org/10.1093/nar/gki458 
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  • 2005 Journal Article
    ​ ​Multiple sequence alignment with user-defined constraints at GOBICS​
    Morgenstern, B. ; Werner, N.; Prohaska, S. J.; Steinkamp, R.; Schneider, I.; Subramanian, A. R. & Stadler, P. F. et al.​ (2005) 
    Bioinformatics21(7) pp. 1271​-1273​.​ DOI: https://doi.org/10.1093/bioinformatics/bti142 
    Details  DOI  PMID  PMC  WoS 
  • 2005 Journal Article | 
    ​ ​Multiple alignment of genomic sequences using CHAOS, DIALIGN and ABC​
    Pohler, D.; Werner, N.; Steinkamp, R. & Morgenstern, B. ​ (2005) 
    Nucleic Acids Research33 pp. W532​-W534​.​ DOI: https://doi.org/10.1093/nar/gki386 
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  • 2005 Journal Article
    ​ ​TICO: a tool for improving predictions of prokaryotic translation initiation sites​
    Tech, M. ; Pfeifer, N.; Morgenstern, B.   & Meinicke, P. ​ (2005) 
    Bioinformatics21(17) pp. 3568​-3569​.​ DOI: https://doi.org/10.1093/bioinformatics/bti563 
    Details  DOI  PMID  PMC  WoS 
  • 2004 Conference Abstract
    ​ ​The DIALIGN multiple alignment program: Recent developments and applications​
    Morgenstern, B. ​ (2004)
    CLADISTICS-THE INTERNATIONAL JOURNAL OF THE WILLI HENNIG SOCIETY20(1) pp. 89​-90. ​22nd Annual Meeting of the Willi-Hennig-Society​, New York Botan Garden, Bronx, NY.
    London​: Academic Press Ltd Elsevier Science Ltd.
    Details  WoS 
  • 2004 Journal Article | 
    ​ ​Oligo kernels for datamining on biological sequences: a case study on prokaryotic translation initiation sites​
    Meinicke, P. ; Tech, M. ; Morgenstern, B.   & Merkl, R.​ (2004) 
    BMC Bioinformatics5 art. 169​.​ DOI: https://doi.org/10.1186/1471-2105-5-169 
    Details  DOI  PMID  PMC  WoS 
  • 2004 Journal Article | 
    ​ ​DIALIGN: multiple DNA and protein sequence alignment at BiBiServ​
    Morgenstern, B. ​ (2004) 
    Nucleic Acids Research32 pp. W33​-W36​.​ DOI: https://doi.org/10.1093/nar/gkh373 
    Details  DOI  PMID  PMC  WoS 
  • 2004 Journal Article | 
    ​ ​DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors​
    Schmollinger, M.; Nieselt, K.; Kaufmann, M. & Morgenstern, B. ​ (2004) 
    BMC Bioinformatics5 art. 128​.​ DOI: https://doi.org/10.1186/1471-2105-5-128 
    Details  DOI  PMID  PMC  WoS 
  • 2004 Journal Article | 
    ​ ​AGenDA: gene prediction by cross-species sequence comparison​
    Taher, L.; Rinner, O.; Garg, S.; Sczyrba, A. & Morgenstern, B. ​ (2004) 
    Nucleic Acids Research32 pp. W305​-W308​.​ DOI: https://doi.org/10.1093/nar/gkh386 
    Details  DOI  PMID  PMC  WoS 
  • 2004 Journal Article | 
    ​ ​AUGUSTUS: a web server for gene finding in eukaryotes​
    Stanke, M.; Steinkamp, R.; Waack, S. & Morgenstern, B. ​ (2004) 
    Nucleic Acids Research32 pp. W309​-W312​.​ DOI: https://doi.org/10.1093/nar/gkh379 
    Details  DOI  PMID  PMC  WoS 
  • 2004 Journal Article | 
    ​ ​The CHAOS/DIALIGN WWW server for multiple alignment of genomic sequences​
    Brudno, M.; Steinkamp, R. & Morgenstern, B. ​ (2004) 
    Nucleic Acids Research32 pp. W41​-W44​.​ DOI: https://doi.org/10.1093/nar/gkh361 
    Details  DOI  PMID  PMC  WoS 
  • 2003 Journal Article
    ​ ​AltAVisT: Comparing alternative multiple sequence alignments​
    Morgenstern, B. ; Goel, S.; Sczyrba, A. & Dress, A.​ (2003) 
    Bioinformatics19(3) pp. 425​-426​.​ DOI: https://doi.org/10.1093/bioinformatics/btf882 
    Details  DOI 
  • 2003 Journal Article | 
    ​ ​Fast and sensitive multiple alignment of large genomic sequences​
    Brudno, M.; Chapman, M. A.; Gottgens, B.; Batzoglou, S. & Morgenstern, B. ​ (2003) 
    BMC Bioinformatics4 art. 66​.​ DOI: https://doi.org/10.1186/1471-2105-4-66 
    Details  DOI  PMID  PMC  WoS 
  • 2003 Journal Article
    ​ ​AGenDA: homology-based gene prediction​
    Taher, L.; Rinner, O.; Garg, S.; Sczyrba, A.; Brudno, M.; Batzoglou, S. & Morgenstern, B. ​ (2003) 
    Bioinformatics19(12) pp. 1575​-1577​.​ DOI: https://doi.org/10.1093/bioinformatics/btg181 
    Details  DOI  PMID  PMC  WoS 
  • 2003 Journal Article
    ​ ​Divide-and-conquer multiple alignment with segment-based constraints​
    Sammeth, M.; Morgenstern, B.   & Stoye, J.​ (2003) 
    Bioinformatics19 pp. II189​-II195​.​ DOI: https://doi.org/10.1093/bioinformatics/btg1077 
    Details  DOI  PMID  PMC  WoS 
  • 2002 Journal Article
    ​ ​Exon discovery by genomic sequence alignment​
    Morgenstern, B. ; Rinner, O.; Abdeddaim, S.; Haase, D.; Mayer, K. F. X.; Dress, A. W. M. & Mewes, H.-W.​ (2002) 
    Bioinformatics18(6) pp. 777​-787​.​ DOI: https://doi.org/10.1093/bioinformatics/18.6.777 
    Details  DOI 
  • 2002 Journal Article | 
    ​ ​MIPS: a database for genomes and protein sequences.​
    Mewes, H. W.; Frishman, D.; Güldener, U.; Mannhaupt, G.; Mayer, K.; Mokrejs, M. & Morgenstern, B.  et al.​ (2002) 
    NUCLEIC ACIDS RESEARCH30(1) pp. 31​-34​.​
    Details 
  • 2002 Journal Article
    ​ ​A simple and space-efficient fragment-chaining algorithm for alignment of DNA and protein sequences​
    Morgenstern, B. ​ (2002) 
    Applied Mathematics Letters15(1) pp. 11​-16​.​ DOI: https://doi.org/10.1016/S0893-9659(01)00085-4 
    Details  DOI 
  • 2001 Journal Article
    ​ ​The HIB database of annotated UniGene clusters​
    Geier, B.; Kastenmuller, G.; Fellenberg, M.; Mewes, H.-W. & Morgenstern, B. ​ (2001) 
    Bioinformatics17(6) pp. 571​-572​.​ DOI: https://doi.org/10.1093/bioinformatics/17.6.571 
    Details  DOI 
  • 2000 Journal Article
    ​ ​A space-efficient algorithm for aligning large genomic sequences​
    Morgenstern, B. ​ (2000) 
    Bioinformatics16(10) pp. 948​-949​.​ DOI: https://doi.org/10.1093/bioinformatics/16.10.948 
    Details  DOI 
  • 1999 Journal Article
    ​ ​DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment​
    Morgenstern, B. ​ (1999) 
    Bioinformatics15(3) pp. 211​-218​.​ DOI: https://doi.org/10.1093/bioinformatics/15.3.211 
    Details  DOI 
  • 1999 Journal Article
    ​ ​An exact solution for the segment-to-segment multiple sequence alignment problem​
    Lenhof, H.; Morgenstern, B.   & Reinert, K.​ (1999) 
    Bioinformatics15(3) pp. 203​-210​.​ DOI: https://doi.org/10.1093/bioinformatics/15.3.203 
    Details  DOI 
  • 1999 Journal Article
    ​ ​Evolution of bHLH transcription factors: modular evolution by domain shuffling?​
    Morgenstern, B.   & Atchley, W. R.​ (1999) 
    Molecular Biology and Evolution16(12) pp. 1654​-1663​.​ DOI: https://doi.org/10.1093/oxfordjournals.molbev.a026079 
    Details  DOI 
  • 1998 Journal Article
    ​ ​DIALIGN: finding local similarities by multiple sequence alignment​
    Morgenstern, B. ; Frech, K.; Dress, A. & Werner, T.​ (1998) 
    Bioinformatics14(3) pp. 290​-294​.​ DOI: https://doi.org/10.1093/bioinformatics/14.3.290 
    Details  DOI 
  • 1998 Journal Article
    ​ ​The number of standard and of effective multiple alignments​
    Dress, A.; Morgenstern, B.   & Stoye, J.​ (1998) 
    Applied Mathematics Letters11(4) pp. 43​-49​.​ DOI: https://doi.org/10.1016/S0893-9659(98)00054-8 
    Details  DOI 
  • 1996 Journal Article
    ​ ​Multiple DNA and protein sequence alignment based on segment-to-segment comparison.​
    Morgenstern, B. ; Dress, A. & Werner, T.​ (1996) 
    Proceedings of the National Academy of Sciences93(22) pp. 12098​-12103​.​ DOI: https://doi.org/10.1073/pnas.93.22.12098 
    Details  DOI 

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