Molecular Systems Biology

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  • 2023 | Journal Article
    ​ ​Fenech, E. J., Cohen, N., Kupervaser, M., Gazi, Z. & Schuldiner, M. (2023). ​A toolbox for systematic discovery of stable and transient protein interactors in baker's yeast. Molecular Systems Biology, 19(2), Article e11084​. ​doi: https://doi.org/10.15252/msb.202211084 
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  • 2023 | Journal Article
    ​ ​O'Reilly, F. J, Graziadei, A., Forbrig, C., Bremenkamp, R., Charles, K., Lenz, S., Elfmann, C. ... Rappsilber, J. (2023). ​Protein complexes in cells by AI ‐assisted structural proteomics. Molecular Systems Biology, . ​doi: https://doi.org/10.15252/msb.202311544 
    ​Details  DOI 
  • 2022 | Journal Article
    ​ ​Hersbach, B. A., Fischer, D. S., Masserdotti, G., Deeksha, D., Mojžišová, K., Waltzhöni, T., Rodriguez-Terrones, D. ... Stricker, S. H. (2022). ​Probing cell identity hierarchies by fate titration and collision during direct reprogramming. Molecular Systems Biology, 18(9), Article e11129​. ​doi: https://doi.org/10.15252/msb.202211129 
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  • 2022 | Journal Article
    ​ ​Qi, Z., Jung, C., Bandilla, P., Ludwig, C., Heron, M., Sophie Kiesel, A., Museridze, M. ... Gaul, U. (2022). ​Large‐scale analysis of Drosophila core promoter function using synthetic promoters. Molecular Systems Biology, 18(2), . ​doi: https://doi.org/10.15252/msb.20209816 
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  • 2022 | Journal Article
    ​ ​Shao, R., Kumar, B., Lidschreiber, K., Lidschreiber, M., Cramer, P. & Elsässer, S. J (2022). ​Distinct transcription kinetics of pluripotent cell states. Molecular Systems Biology, 18(1), . ​doi: https://doi.org/10.15252/msb.202110407 
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  • 2021 | Journal Article
    ​ ​Frauenstein, A., Ebner, S., Hansen, F. M., Sinha, A., Phulphagar, K., Swatek, K., Hornburg, D. ... Meissner, F. (2021). ​Identification of covalent modifications regulating immune signaling complex composition and phenotype. Molecular Systems Biology, 17(7), Article e10125​. ​doi: https://doi.org/10.15252/msb.202010125 
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  • 2021 | Journal Article | Research Paper | 
    ​ ​Sofiadis, K., Josipovic, N., Nikolic, M., Kargapolova, Y., Übelmesser, N., Varamogianni‐Mamatsi, V., Zirkel, A. ... Mizi, A. (2021). ​HMGB1 coordinates SASP‐related chromatin folding and RNA homeostasis on the path to senescence. Molecular Systems Biology, 17(6), . ​doi: https://doi.org/10.15252/msb.20209760 
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  • 2021 | Journal Article | Research Paper | 
    ​ ​Lidschreiber, K., Jung, L. A, von der Emde, H., Dave, K., Taipale, J., Cramer, P. & Lidschreiber, M. (2021). ​Transcriptionally active enhancers in human cancer cells. Molecular Systems Biology, 17(1), Article e9873​. ​doi: https://doi.org/10.15252/msb.20209873 
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  • 2018 | Journal Article
    ​ ​Rada-Iglesias, A., Grosveld, F. G. & Papantonis, A. (2018). ​Forces driving the three-dimensional folding of eukaryotic genomes. Molecular Systems Biology, 14(6), Article e8214​. ​doi: https://doi.org/10.15252/msb.20188214 
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  • 2017 | Journal Article
    ​ ​Michel, M., Demel, C., Zacher, B., Schwalb, B., Krebs, S., Blum, H., Gagneur, J. ... Cramer, P. (2017). ​TT‐seq captures enhancer landscapes immediately after T‐cell stimulation. Molecular Systems Biology, 13(3), Article 920​. ​doi: https://doi.org/10.15252/msb.20167507 
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  • 2017 | Journal Article
    ​ ​Hatje, K., Rahman, Raza-Ur, Vidal, R. O., Simm, D., Hammesfahr, B., Bansal, V., Rajput, A. ... Kollmar, M. (2017). ​The landscape of human mutually exclusive splicing. Molecular systems biology, 13(12), Article 959​. ​doi: https://doi.org/10.15252/msb.20177728 
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  • 2016 | Journal Article
    ​ ​Brant, L., Georgomanolis, T., Nikolic, M., Brackley, C. A., Kolovos, P., van Ijcken, W., Grosveld, F. G. ... Papantonis, A. (2016). ​Exploiting native forces to capture chromosome conformation in mammalian cell nuclei. Molecular Systems Biology, 12(12), ​891​. ​doi: https://doi.org/10.15252/msb.20167311 
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  • 2016 | Journal Article
    ​ ​Eser, P., Wachutka, L., Maier, K. C., Demel, C., Boroni, M., Iyer, S., Cramer, P. ... Gagneur, J. (2016). ​Determinants of RNA metabolism in the Schizosaccharomyces pombe genome. Molecular Systems Biology, 12(2), Article 857​. ​doi: https://doi.org/10.15252/msb.20156526 
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  • 2015 | Journal Article | 
    ​ ​Lluch-Senar, M., Delgado, J., Chen, Wei-Hua, Lloréns-Rico, V., O'Reilly, F. J., Wodke, J. A., Unal, E. B. ... Serrano, L. (2015). ​Defining a minimal cell: essentiality of small ORFs and ncRNAs in a genome-reduced bacterium.. Molecular systems biology, 11, Article 780​. ​doi: https://doi.org/10.15252/msb.20145558 
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  • 2014 | Journal Article | Research Paper | 
    ​ ​Eser, P., Demel, C., Maier, K. C, Schwalb, B., Pirkl, N., Martin, D. E, Cramer, P. ... Tresch, A. (2014). ​Periodic mRNA synthesis and degradation co‐operate during cell cycle gene expression. Molecular Systems Biology, 10(4), ​726​-15​. ​doi: https://doi.org/10.1002/msb.20140001 
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  • 2014 | Journal Article | Research Paper | 
    ​ ​Zacher, B., Lidschreiber, M., Cramer, P., Gagneur, J. & Tresch, A. (2014). ​Annotation of genomics data using bidirectional hidden Markov models unveils variations in Pol II transcription cycle. Molecular Systems Biology, 10(12), Article 768​. ​doi: https://doi.org/10.15252/msb.20145654 
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  • 2012 | Journal Article | 
    ​ ​van Noort, V., Seebacher, J., Bader, S., Mohammed, S., Vonkova, I., Betts, M. J., Kuehner, S. ... Gavin, Anne-Claude (2012). ​Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium. Molecular Systems Biology, 8, Article 571​. ​doi: https://doi.org/10.1038/msb.2012.4 
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  • 2011 | Journal Article
    ​ ​Sievers, F., Wilm, A., Dineen, D., Gibson, T. J, Karplus, K., Li, W., Lopez, R. ... Higgins, D. G (2011). ​Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega. Molecular Systems Biology, 7(1), ​539​. ​doi: https://doi.org/10.1038/msb.2011.75 
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  • 2011 | Journal Article | Research Paper
    ​ ​Miller, C., Schwalb, B., Maier, K., Schulz, D., Duemcke, S., Zacher, B., Mayer, A. ... Cramer, P. (2011). ​Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast. Molecular Systems Biology, 7, Article 458​. ​doi: https://doi.org/10.1038/msb.2010.112 
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  • 2011 | Journal Article | Research Paper
    ​ ​Kleine-Vehn, J., Wabnik, K., Martinière, A., Langowski, L., Willig, K., Naramoto, S., Leitner, J. ... Friml, J. (2011). ​Recycling, clustering, and endocytosis jointly maintain PIN auxin carrier polarity at the plasma membrane. Molecular Systems Biology, 7(1), Article 540​. ​doi: https://doi.org/10.1038/msb.2011.72 
    ​Details  DOI  PMID  PMC  WoS 

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