Molecular Systems Biology

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  • 2023 | Journal Article
    ​ ​Fenech, Emma J., Nir Cohen, Meital Kupervaser, Zohar Gazi, and Maya Schuldiner. "A toolbox for systematic discovery of stable and transient protein interactors in baker's yeast​." ​Molecular Systems Biology ​19, no. 2 (2023): ​e11084​. ​https://doi.org/10.15252/msb.202211084.
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  • 2023 | Journal Article
    ​ ​O'Reilly, Francis J, Andrea Graziadei, Christian Forbrig, Rica Bremenkamp, Kristine Charles, Swantje Lenz, Christoph Elfmann, Lutz Fischer, Jörg Stülke, and Juri Rappsilber. "Protein complexes in cells by AI ‐assisted structural proteomics​." ​Molecular Systems Biology (2023): . ​https://doi.org/10.15252/msb.202311544.
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  • 2022 | Journal Article
    ​ ​Hersbach, Bob A., David S. Fischer, Giacomo Masserdotti, D. Deeksha, Karolina Mojžišová, Thomas Waltzhöni, Diego Rodriguez-Terrones et al. "Probing cell identity hierarchies by fate titration and collision during direct reprogramming​." ​Molecular Systems Biology ​18, no. 9 (2022): ​e11129​. ​https://doi.org/10.15252/msb.202211129.
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  • 2022 | Journal Article
    ​ ​Qi, Zhan, Christophe Jung, Peter Bandilla, Claudia Ludwig, Mark Heron, Anja Sophie Kiesel, Mariam Museridze et al. "Large‐scale analysis of Drosophila core promoter function using synthetic promoters​." ​Molecular Systems Biology ​18, no. 2 (2022): . ​https://doi.org/10.15252/msb.20209816.
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  • 2022 | Journal Article
    ​ ​Shao, Rui, Banushree Kumar, Katja Lidschreiber, Michael Lidschreiber, Patrick Cramer, and Simon J Elsässer. "Distinct transcription kinetics of pluripotent cell states​." ​Molecular Systems Biology ​18, no. 1 (2022): . ​https://doi.org/10.15252/msb.202110407.
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  • 2021 | Journal Article
    ​ ​Frauenstein, Annika, Stefan Ebner, Fynn M. Hansen, Ankit Sinha, Kshiti Phulphagar, Kirby Swatek, Daniel Hornburg, Matthias Mann, and Felix Meissner. "Identification of covalent modifications regulating immune signaling complex composition and phenotype​." ​Molecular Systems Biology ​17, no. 7 (2021): ​e10125​. ​https://doi.org/10.15252/msb.202010125.
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  • 2021 | Journal Article | Research Paper | 
    ​ ​Sofiadis, Konstantinos, Natasa Josipovic, Milos Nikolic, Yulia Kargapolova, Nadine Übelmesser, Vassiliki Varamogianni‐Mamatsi, Anne Zirkel et al. "HMGB1 coordinates SASP‐related chromatin folding and RNA homeostasis on the path to senescence​." ​Molecular Systems Biology ​17, no. 6 (2021): . ​https://doi.org/10.15252/msb.20209760.
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  • 2021 | Journal Article | Research Paper | 
    ​ ​Lidschreiber, Katja, Lisa A Jung, Henrik von der Emde, Kashyap Dave, Jussi Taipale, Patrick Cramer, and Michael Lidschreiber. "Transcriptionally active enhancers in human cancer cells​." ​Molecular Systems Biology ​17, no. 1 (2021): ​e9873​. ​https://doi.org/10.15252/msb.20209873.
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  • 2018 | Journal Article
    ​ ​Rada-Iglesias, Alvaro, Frank G. Grosveld, and Argyris Papantonis. "Forces driving the three-dimensional folding of eukaryotic genomes​." ​Molecular Systems Biology ​14, no. 6 (2018): ​e8214​. ​https://doi.org/10.15252/msb.20188214.
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  • 2017 | Journal Article
    ​ ​Michel, Margaux, Carina Demel, Benedikt Zacher, Bjorn Schwalb, Stefan Krebs, Helmut Blum, Julien Gagneur, and Patrick Cramer. "TT‐seq captures enhancer landscapes immediately after T‐cell stimulation​." ​Molecular Systems Biology ​13, no. 3 (2017): ​920​. ​https://doi.org/10.15252/msb.20167507.
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  • 2017 | Journal Article
    ​ ​Hatje, Klas, Raza-Ur Rahman, Ramon O. Vidal, Dominic Simm, Björn Hammesfahr, Vikas Bansal, Ashish Rajput et al. "The landscape of human mutually exclusive splicing​." ​Molecular systems biology ​13, no. 12 (2017): ​959​. ​https://doi.org/10.15252/msb.20177728.
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  • 2016 | Journal Article
    ​ ​Brant, Lilija, Theodore Georgomanolis, Milos Nikolic, Chris A. Brackley, Petros Kolovos, Wilfred van Ijcken, Frank G. Grosveld, Davide Marenduzzo, and Argyris Papantonis. "Exploiting native forces to capture chromosome conformation in mammalian cell nuclei​." ​Molecular Systems Biology ​12, no. 12 (2016): ​891​. ​https://doi.org/10.15252/msb.20167311.
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  • 2016 | Journal Article
    ​ ​Eser, P., L. Wachutka, K. C. Maier, C. Demel, M. Boroni, S. Iyer, P. Cramer, and J. Gagneur. "Determinants of RNA metabolism in the Schizosaccharomyces pombe genome​." ​Molecular Systems Biology ​12, no. 2 (2016): ​857​. ​https://doi.org/10.15252/msb.20156526.
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  • 2015 | Journal Article | 
    ​ ​Lluch-Senar, Maria, Javier Delgado, Wei-Hua Chen, Verónica Lloréns-Rico, Francis J. O'Reilly, Judith A.H. Wodke, E. Besray Unal et al. "Defining a minimal cell: essentiality of small ORFs and ncRNAs in a genome-reduced bacterium.​." ​Molecular systems biology ​11 (2015): ​780​. ​https://doi.org/10.15252/msb.20145558.
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  • 2014 | Journal Article | Research Paper | 
    ​ ​Eser, Philipp, Carina Demel, Kerstin C Maier, Björn Schwalb, Nicole Pirkl, Dietmar E Martin, Patrick Cramer, and Achim Tresch. "Periodic mRNA synthesis and degradation co‐operate during cell cycle gene expression​." ​Molecular Systems Biology ​10, no. 4 (2014): ​726​-15​. ​https://doi.org/10.1002/msb.20140001.
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  • 2014 | Journal Article | Research Paper | 
    ​ ​Zacher, B., M. Lidschreiber, P. Cramer, J. Gagneur, and A. Tresch. "Annotation of genomics data using bidirectional hidden Markov models unveils variations in Pol II transcription cycle​." ​Molecular Systems Biology ​10, no. 12 (2014): ​768​. ​https://doi.org/10.15252/msb.20145654.
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  • 2012 | Journal Article | 
    ​ ​van Noort, Vera, Jan Seebacher, Samuel Bader, Shabaz Mohammed, Ivana Vonkova, Matthew J. Betts, Sebastian Kuehner et al. "Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium​." ​Molecular Systems Biology ​8 (2012): ​571​. ​https://doi.org/10.1038/msb.2012.4.
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  • 2011 | Journal Article
    ​ ​Sievers, Fabian, Andreas Wilm, David Dineen, Toby J Gibson, Kevin Karplus, Weizhong Li, Rodrigo Lopez et al. "Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega​." ​Molecular Systems Biology ​7, no. 1 (2011): ​539​. ​https://doi.org/10.1038/msb.2011.75.
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  • 2011 | Journal Article | Research Paper
    ​ ​Miller, C., B. Schwalb, K. Maier, D. Schulz, S. Duemcke, B. Zacher, A. Mayer et al. "Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast​." ​Molecular Systems Biology ​7 (2011): ​458​. ​https://doi.org/10.1038/msb.2010.112.
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  • 2011 | Journal Article | Research Paper
    ​ ​Kleine-Vehn, Jürgen, Krzysztof Wabnik, Alexandre Martinière, Lukasz Langowski, Katrin Willig, Satoshi Naramoto, Johannes Leitner et al. "Recycling, clustering, and endocytosis jointly maintain PIN auxin carrier polarity at the plasma membrane​." ​Molecular Systems Biology ​7, no. 1 (2011): ​540​. ​https://doi.org/10.1038/msb.2011.72.
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