Prof. Dr. Michael Habeck

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  • 2021 | Journal Article | Research Paper
    ​ ​Non‐negative blind deconvolution for signal processing in a CRISPR‐edited iPSC‐cardiomyocyte model of dilated cardiomyopathy​
    Xu, H.; Wali, R.; Cheruiyot, C.; Bodenschatz, J.; Hasenfuss, G. ; Janshoff, A.   & Habeck, M.  et al.​ (2021) 
    FEBS Letters,.​ DOI: https://doi.org/10.1002/1873-3468.14189 
    ​Details  DOI  PMID  PMC 
  • 2020 | Journal Article
    ​ ​Bayesian inference of chromatin structure ensembles from population-averaged contact data​
    Carstens, S.; Nilges, M. & Habeck, M. ​ (2020) 
    Proceedings of the National Academy of Sciences, 117(14) pp. 7824​-7830​.​ DOI: https://doi.org/10.1073/pnas.1910364117 
    ​Details  DOI 
  • 2019 | Journal Article
    ​ ​Bayesian Structural Modeling of Large Biomolecular Systems​
    Habeck, M. ​ (2019) 
    Biophysical Journal, 116(3) pp. 330a​.​ DOI: https://doi.org/10.1016/j.bpj.2018.11.1793 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​A probabilistic network model for structural transitions in biomolecules​
    Habeck, M.   & Nguyen, T.​ (2018) 
    Proteins, 86(6) pp. 634​-643​.​ DOI: https://doi.org/10.1002/prot.25490 
    ​Details  DOI 
  • 2017 | Journal Article
    ​ ​Bayesian Modeling of Biomolecular Assemblies with Cryo-EM Maps​
    Habeck, M. ​ (2017) 
    Frontiers in Molecular Biosciences, 4.​ DOI: https://doi.org/10.3389/fmolb.2017.00015 
    ​Details  DOI 
  • 2016 | Journal Article
    ​ ​Cooperative binding: a multiple personality​
    Martini, J. W. R.; Diambra, L. & Habeck, M. ​ (2016) 
    Journal of Mathematical Biology, 72(7) pp. 1747​-1774​.​ DOI: https://doi.org/10.1007/s00285-015-0922-z 
    ​Details  DOI  PMID  PMC  WoS 
  • 2016 | Journal Article | Research Paper
    ​ ​The adaptor protein CIN85 assembles intracellular signaling clusters for B cell activation​
    Kühn, J. ; Wong, L. E. ; Pirkuliyeva, S. ; Schulz, K. ; Schwiegk, C. ; Fünfgeld, K. G.   & Keppler, S. et al.​ (2016) 
    Science Signaling, 9(434) art. ra66​.​ DOI: https://doi.org/10.1126/scisignal.aad6275 
    ​Details  DOI  PMID  PMC  WoS 
  • 2015 | Journal Article
    ​ ​Bayesian evidence and model selection​
    Knuth, K. H.; Habeck, M. ; Malakar, N. K.; Mubeen, A. M. & Placek, B.​ (2015) 
    Digital Signal Processing, 47 pp. 50​-67​.​ DOI: https://doi.org/10.1016/j.dsp.2015.06.012 
    ​Details  DOI  WoS 
  • 2015 | Journal Article
    ​ ​Structure and Evolution of N-domains in AAA Metalloproteases​
    Scharfenberg, F.; Serek-Heuberger, J.; Coles, M.; Hartmann, M. D.; Habeck, M. ; Martin, J. & Lupas, A. N. et al.​ (2015) 
    Journal of Molecular Biology, 427(4) pp. 910​-923​.​ DOI: https://doi.org/10.1016/j.jmb.2014.12.024 
    ​Details  DOI 
  • 2015 | Journal Article
    ​ ​Solid-state NMR Study of the YadA Membrane-Anchor Domain in the Bacterial Outer Membrane​
    Shahid, S. A.; Nagaraj, M.; Chauhan, N.; Franks, T. W.; Bardiaux, B.; Habeck, M.   & Orwick-Rydmark, M. et al.​ (2015) 
    Angewandte Chemie. International Edition, 54(43) pp. 12602​-12606​.​ DOI: https://doi.org/10.1002/anie.201505506 
    ​Details  DOI 
  • 2015 | Journal Article
    ​ ​Festkörper‐NMR‐Studien an der Membrananker‐Domäne von YadA in der bakteriellen Außenmembran​
    Shahid, S. A.; Nagaraj, M.; Chauhan, N.; Franks, T. W.; Bardiaux, B.; Habeck, M.   & Orwick-Rydmark, M. et al.​ (2015) 
    Angewandte Chemie International Edition, 54(43) pp. 12602​-12606​.​ DOI: https://doi.org/10.1002/ange.201505506 
    ​Details  DOI  PMID  PMC  WoS 
  • 2015 | Journal Article
    ​ ​Bayesian Inference of Initial Models in Cryo-Electron Microscopy Using Pseudo-atoms​
    Joubert, P. & Habeck, M. ​ (2015) 
    Biophysical Journal, 108(5) pp. 1165​-1175​.​ DOI: https://doi.org/10.1016/j.bpj.2014.12.054 
    ​Details  DOI  PMID  PMC  WoS 
  • 2015 | Journal Article
    ​ ​Hybrid Structure of the Type 1 Pilus of Uropathogenic Escherichia coli​
    Habenstein, B. ; Loquet, A.; Hwang, S.; Giller, K. ; Vasa, S. K.; Becker, S. & Habeck, M.  et al.​ (2015) 
    Angewandte Chemie International Edition, 54(40) pp. 11691​-11695​.​ DOI: https://doi.org/10.1002/anie.201505065 
    ​Details  DOI  PMID  PMC  WoS 
  • 2015 | Journal Article
    ​ ​Comparison of the kinetics of different Markov models for ligand binding under varying conditions​
    Martini, J. W. R. & Habeck, M. ​ (2015) 
    The Journal of Chemical Physics, 142(9) art. 094104​.​ DOI: https://doi.org/10.1063/1.4908531 
    ​Details  DOI  PMID  PMC  WoS 
  • 2014 | Journal Article
    ​ ​Autonomous reconstruction and segmentation of tomographic data​
    Wollgarten, M. & Habeck, M. ​ (2014) 
    Micron, 63 pp. 20​-27​.​ DOI: https://doi.org/10.1016/j.micron.2014.02.005 
    ​Details  DOI  PMID  PMC  WoS 
  • 2014 | Journal Article
    ​ ​Bayesian approach to inverse statistical mechanics​
    Habeck, M. ​ (2014) 
    Physical Review. E, 89(5) art. 052113​.​ DOI: https://doi.org/10.1103/PhysRevE.89.052113 
    ​Details  DOI  PMID  PMC  WoS 
  • 2013 | Journal Article
    ​ ​A probabilistic model for secondary structure prediction from protein chemical shifts​
    Mechelke, M. & Habeck, M. ​ (2013) 
    Proteins: Structure, Function, and Bioinformatics, 81(6) pp. 984​-993​.​ DOI: https://doi.org/10.1002/prot.24249 
    ​Details  DOI 
  • 2013 | Journal Article
    ​ ​Estimation of Interaction Potentials through the Configurational Temperature Formalism​
    Mechelke, M. & Habeck, M. ​ (2013) 
    Journal of Chemical Theory and Computation, 9(12) pp. 5685​-5692​.​ DOI: https://doi.org/10.1021/ct400580p 
    ​Details  DOI  PMID  PMC  WoS 
  • 2012 | Journal Article
    ​ ​Membrane-protein structure determination by solid-state NMR spectroscopy of microcrystals​
    Shahid, S. A.; Bardiaux, B.; Franks, W. T.; Krabben, L.; Habeck, M. ; van Rossum, B.-J. & Linke, D.​ (2012) 
    Nature Methods, 9(12) pp. 1212​-1217​.​ DOI: https://doi.org/10.1038/nmeth.2248 
    ​Details  DOI 
  • 2012 | Journal Article
    ​ ​Structure-Activity Analysis of the Dermcidin-derived Peptide DCD-1L, an Anionic Antimicrobial Peptide Present in Human Sweat​
    Paulmann, M.; Arnold, T.; Linke, D.; Özdirekcan, S.; Kopp, A.; Gutsmann, T. & Kalbacher, H. et al.​ (2012) 
    Journal of Biological Chemistry, 287(11) pp. 8434​-8443​.​ DOI: https://doi.org/10.1074/jbc.M111.332270 
    ​Details  DOI 
  • 2012 | Journal Article
    ​ ​Bayesian Estimation of Free Energies From Equilibrium Simulations​
    Habeck, M. ​ (2012) 
    Physical Review Letters, 109(10) art. 100601​.​ DOI: https://doi.org/10.1103/PhysRevLett.109.100601 
    ​Details  DOI 
  • 2012 | Journal Article
    ​ ​CSB: a Python framework for structural bioinformatics​
    Kalev, I.; Mechelke, M.; Kopec, K. O.; Holder, T.; Carstens, S. & Habeck, M. ​ (2012) 
    Bioinformatics, 28(22) pp. 2996​-2997​.​ DOI: https://doi.org/10.1093/bioinformatics/bts538 
    ​Details  DOI 
  • 2012 | Journal Article
    ​ ​Calibration of Boltzmann distribution priors in Bayesian data analysis​
    Mechelke, M. & Habeck, M. ​ (2012) 
    Physical Review E, 86(6) art. 066705​.​ DOI: https://doi.org/10.1103/PhysRevE.86.066705 
    ​Details  DOI 
  • 2012 | Journal Article | Research Paper
    ​ ​Inferential NMR/X-ray-Based Structure Determination of a Dibenzo[a,d]cycloheptenone Inhibitor-p38a MAP Kinase Complex in Solution​
    Honndorf, V. S.; Coudevylle, N.; Laufer, S.; Becker, S. ; Griesinger, C.   & Habeck, M. ​ (2012) 
    Angewandte Chemie International Edition, 51(10) pp. 2359​-2362​.​ DOI: https://doi.org/10.1002/anie.201105241 
    ​Details  DOI  PMID  PMC  WoS 
  • 2011 | Journal Article
    ​ ​Statistical mechanics analysis of sparse data​
    Habeck, M. ​ (2011) 
    Journal of Structural Biology, 173(3) pp. 541​-548​.​ DOI: https://doi.org/10.1016/j.jsb.2010.09.016 
    ​Details  DOI 
  • 2011 | Journal Article
    ​ ​Combining computational modeling with sparse and low-resolution data​
    Habeck, M.   & Nilges, M.​ (2011) 
    Journal of Structural Biology, 173(3) pp. 419​.​ DOI: https://doi.org/10.1016/j.jsb.2011.01.002 
    ​Details  DOI 
  • 2011 | Journal Article
    ​ ​A Blind Deconvolution Approach for Improving the Resolution of Cryo-EM Density Maps​
    Hirsch, M.; Schölkopf, B. & Habeck, M. ​ (2011) 
    Journal of Computational Biology, 18(3) pp. 335​-346​.​ DOI: https://doi.org/10.1089/cmb.2010.0264 
    ​Details  DOI 
  • 2011 | Journal Article
    ​ ​HHfrag: HMM-based fragment detection using HHpred​
    Kalev, I. & Habeck, M. ​ (2011) 
    Bioinformatics, 27(22) pp. 3110​-3116​.​ DOI: https://doi.org/10.1093/bioinformatics/btr541 
    ​Details  DOI 
  • 2010 | Journal Article
    ​ ​Localization of eukaryote-specific ribosomal proteins in a 5.5-A cryo-EM map of the 80S eukaryotic ribosome​
    Armache, J.-P.; Jarasch, A.; Anger, A. M.; Villa, E.; Becker, T.; Bhushan, S. & Jossinet, F. et al.​ (2010) 
    Proceedings of the National Academy of Sciences of the United States of America, 107(46) pp. 19754​-19759​.​ DOI: https://doi.org/10.1073/pnas.1010005107 
    ​Details  DOI 
  • 2010 | Journal Article
    ​ ​Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution​
    Armache, J.-P.; Jarasch, A.; Anger, A. M.; Villa, E.; Becker, T.; Bhushan, S. & Jossinet, F. et al.​ (2010) 
    Proceedings of the National Academy of Sciences, 107(46) pp. 19748​-19753​.​ DOI: https://doi.org/10.1073/pnas.1009999107 
    ​Details  DOI 
  • 2009 | Journal Article
    ​ ​Influence of different assignment conditions on the determination of symmetric homodimeric structures with ARIA​
    Bardiaux, B.; Bernard, A.; Rieping, W.; Habeck, M. ; Malliavin, T. E. & Nilges, M.​ (2009) 
    Proteins: Structure, Function, and Bioinformatics, 75(3) pp. 569​-585​.​ DOI: https://doi.org/10.1002/prot.22268 
    ​Details  DOI 
  • 2009 | Journal Article
    ​ ​The GD box: A widespread noncontiguous supersecondary structural element​
    Alva, V.; Dunin-Horkawicz, S.; Habeck, M. ; Coles, M. & Lupas, A. N.​ (2009) 
    Protein Science, 18(9) pp. 1961​-1966​.​ DOI: https://doi.org/10.1002/pro.207 
    ​Details  DOI 
  • 2009 | Journal Article
    ​ ​Investigation Of Electrogenic Partial Reactions In Detergent-solubilized Na,K-ATPase​
    Habeck, M.   & Apell, H.-J.​ (2009) 
    Biophysical Journal, 96(3) pp. 145a​.​ DOI: https://doi.org/10.1016/j.bpj.2008.12.646 
    ​Details  DOI 
  • 2009 | Journal Article
    ​ ​Structure and Activity of the N-Terminal Substrate Recognition Domains in Proteasomal ATPases​
    Djuranovic, S.; Hartmann, M. D.; Habeck, M. ; Ursinus, A.; Zwickl, P.; Martin, J. & Lupas, A. N. et al.​ (2009) 
    Molecular Cell, 34(5) pp. 580​-590​.​ DOI: https://doi.org/10.1016/j.molcel.2009.04.030 
    ​Details  DOI 
  • 2008 | Journal Article
    ​ ​Accurate NMR Structures Through Minimization of an Extended Hybrid Energy​
    Nilges, M.; Bernard, A.; Bardiaux, B.; Malliavin, T.; Habeck, M.   & Rieping, W.​ (2008) 
    Structure, 16(9) pp. 1305​-1312​.​ DOI: https://doi.org/10.1016/j.str.2008.07.008 
    ​Details  DOI 
  • 2008 | Journal Article
    ​ ​Probabilistic structure calculation​
    Nilges, M.; Habeck, M.   & Rieping, W.​ (2008) 
    Comptes Rendus Chimie, 11(4-5) pp. 356​-369​.​ DOI: https://doi.org/10.1016/j.crci.2007.11.006 
    ​Details  DOI 
  • 2008 | Journal Article
    ​ ​Comparative Analysis of Structural and Dynamic Properties of the Loaded and Unloaded Hemophore HasA: Functional Implications​
    Wolff, N.; Izadi-Pruneyre, N.; Couprie, J.; Habeck, M. ; Linge, J.; Rieping, W. & Wandersman, C. et al.​ (2008) 
    Journal of Molecular Biology, 376(2) pp. 517​-525​.​ DOI: https://doi.org/10.1016/j.jmb.2007.11.072 
    ​Details  DOI 
  • 2008 | Journal Article
    ​ ​ISD: a software package for Bayesian NMR structure calculation​
    Rieping, W.; Nilges, M. & Habeck, M. ​ (2008) 
    Bioinformatics, 24(8) pp. 1104​-1105​.​ DOI: https://doi.org/10.1093/bioinformatics/btn062 
    ​Details  DOI 
  • 2008 | Journal Article
    ​ ​Mixture models for protein structure ensembles​
    Hirsch, M. & Habeck, M. ​ (2008) 
    Bioinformatics, 24(19) pp. 2184​-2192​.​ DOI: https://doi.org/10.1093/bioinformatics/btn396 
    ​Details  DOI 
  • 2008 | Journal Article
    ​ ​Graphical analysis of NMR structural quality and interactive contact map of NOE assignments in ARIA​
    Bardiaux, B.; Bernard, A.; Rieping, W.; Habeck, M. ; Malliavin, T. E & Nilges, M.​ (2008) 
    BMC Structural Biology, 8(1) pp. 30​.​ DOI: https://doi.org/10.1186/1472-6807-8-30 
    ​Details  DOI 
  • 2008 | Journal Article | Research Paper
    ​ ​Structure of the human voltage-dependent anion channel​
    Bayrhuber, M.; Meins, T.; Habeck, M. ; Becker, S. ; Giller, K. ; Villinger, S.   & Vonrhein, C. et al.​ (2008) 
    Proceedings of the National Academy of Sciences, 105(40) pp. 15370​-15375​.​ DOI: https://doi.org/10.1073/pnas.0808115105 
    ​Details  DOI  PMID  PMC  WoS 
  • 2007 | Journal Article
    ​ ​Bayesian Reconstruction of the Density of States​
    Habeck, M. ​ (2007) 
    Physical Review Letters, 98(20) art. 200601​.​ DOI: https://doi.org/10.1103/PhysRevLett.98.200601 
    ​Details  DOI 
  • 2006 | Journal Article
    ​ ​ARIA2: Automated NOE assignment and data integration in NMR structure calculation​
    Rieping, W.; Habeck, M. ; Bardiaux, B.; Bernard, A.; Malliavin, T. E. & Nilges, M.​ (2006) 
    Bioinformatics, 23(3) pp. 381​-382​.​ DOI: https://doi.org/10.1093/bioinformatics/btl589 
    ​Details  DOI 
  • 2006 | Journal Article
    ​ ​Structure validation of the Josephin domain of ataxin-3: Conclusive evidence for an open conformation​
    Nicastro, G.; Habeck, M. ; Masino, L.; Svergun, D. I. & Pastore, A.​ (2006) 
    Journal of Biomolecular NMR, 36(4) pp. 267​-277​.​ DOI: https://doi.org/10.1007/s10858-006-9092-z 
    ​Details  DOI 
  • 2006 | Journal Article
    ​ ​Weighting of experimental evidence in macromolecular structure determination​
    Habeck, M. ; Rieping, W. & Nilges, M.​ (2006) 
    Proceedings of the National Academy of Sciences, 103(6) pp. 1756​-1761​.​ DOI: https://doi.org/10.1073/pnas.0506412103 
    ​Details  DOI 
  • 2006 | Journal Article
    ​ ​Error distribution derived NOE distance restraints​
    Nilges, M.; Habeck, M. ; O'Donoghue, S. I. & Rieping, W.​ (2006) 
    Proteins: Structure, Function, and Bioinformatics, 64(3) pp. 652​-664​.​ DOI: https://doi.org/10.1002/prot.20985 
    ​Details  DOI 
  • 2006 | Journal Article | Research Paper
    ​ ​NMR in the SPINE structural proteomics project​
    Ab, E.; Atkinson, A. R.; Banci, L.; Bertini, I.; Ciofi-Baffoni, S.; Brunner, K. & Diercks, T. et al.​ (2006) 
    Acta Crystallographica Section D Biological Crystallography, 62 pp. 1150​-1161​.​ DOI: https://doi.org/10.1107/S0907444906032070 
    ​Details  DOI  PMID  PMC  WoS 
  • 2005 | Journal Article
    ​ ​Bayesian estimation of Karplus parameters and torsion angles from three-bond scalar couplings constants​
    Habeck, M. ; Rieping, W. & Nilges, M.​ (2005) 
    Journal of Magnetic Resonance, 177(1) pp. 160​-165​.​ DOI: https://doi.org/10.1016/j.jmr.2005.06.016 
    ​Details  DOI 
  • 2005 | Journal Article
    ​ ​Inferential Structure Determination​
    Rieping, W.; Habeck, M.   & Nilges, M.​ (2005) 
    Science, 309(5732) pp. 303​-306​.​ DOI: https://doi.org/10.1126/science.1110428 
    ​Details  DOI 
  • 2005 | Journal Article
    ​ ​Replica-Exchange Monte Carlo Scheme for Bayesian Data Analysis​
    Habeck, M. ; Nilges, M. & Rieping, W.​ (2005) 
    Physical Review Letters, 94(1) art. 018105​.​ DOI: https://doi.org/10.1103/PhysRevLett.94.018105 
    ​Details  DOI 
  • 2005 | Journal Article
    ​ ​Bayesian inference applied to macromolecular structure determination​
    Habeck, M. ; Nilges, M. & Rieping, W.​ (2005) 
    Physical Review E, 72(3) art. 031912​.​ DOI: https://doi.org/10.1103/PhysRevE.72.031912 
    ​Details  DOI 
  • 2005 | Journal Article
    ​ ​Modeling Errors in NOE Data with a Log-normal Distribution Improves the Quality of NMR Structures​
    Rieping, W.; Habeck, M.   & Nilges, M.​ (2005) 
    Journal of the American Chemical Society, 127(46) pp. 16026​-16027​.​ DOI: https://doi.org/10.1021/ja055092c 
    ​Details  DOI 
  • 2004 | Journal Article
    ​ ​Correction of spin diffusion during iterative automated NOE assignment​
    Linge, J. P.; Habeck, M. ; Rieping, W. & Nilges, M.​ (2004) 
    Journal of Magnetic Resonance, 167(2) pp. 334​-342​.​ DOI: https://doi.org/10.1016/j.jmr.2004.01.010 
    ​Details  DOI 
  • 2003 | Journal Article
    ​ ​ARIA: automated NOE assignment and NMR structure calculation​
    Linge, J. P.; Habeck, M. ; Rieping, W. & Nilges, M.​ (2003) 
    Bioinformatics, 19(2) pp. 315​-316​.​ DOI: https://doi.org/10.1093/bioinformatics/19.2.315 
    ​Details  DOI 
  • 2001 | Journal Article
    ​ ​Structural and functional studies of titin’s fn3 modules reveal conserved surface patterns and binding to myosin S1 - a possible role in the frank-starling mechanism of the heart​
    Muhle-Goll, C.; Habeck, M. ; Cazorla, O.; Nilges, M.; Labeit, S. & Granzier, H.​ (2001) 
    Journal of Molecular Biology, 313(2) pp. 431​-447​.​ DOI: https://doi.org/10.1006/jmbi.2001.5017 
    ​Details  DOI 

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