Prof. Dr. Michael Habeck

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  • 2010 | Journal Article
    ​ ​Localization of eukaryote-specific ribosomal proteins in a 5.5-A cryo-EM map of the 80S eukaryotic ribosome​
    Armache, J.-P.; Jarasch, A.; Anger, A. M.; Villa, E.; Becker, T.; Bhushan, S. & Jossinet, F. et al.​ (2010) 
    Proceedings of the National Academy of Sciences of the United States of America, 107(46) pp. 19754​-19759​.​ DOI: https://doi.org/10.1073/pnas.1010005107 
    ​Details  DOI 
  • 2010 | Journal Article
    ​ ​Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution​
    Armache, J.-P.; Jarasch, A.; Anger, A. M.; Villa, E.; Becker, T.; Bhushan, S. & Jossinet, F. et al.​ (2010) 
    Proceedings of the National Academy of Sciences, 107(46) pp. 19748​-19753​.​ DOI: https://doi.org/10.1073/pnas.1009999107 
    ​Details  DOI 
  • 2010 | Journal Article | 
    ​ ​Robust probabilistic superposition and comparison of protein structures​
    Mechelke, M. & Habeck, M. ​ (2010) 
    BMC Bioinformatics, 11(1) art. 363​.​ DOI: https://doi.org/10.1186/1471-2105-11-363 
    ​Details  DOI 
  • 2011 | Journal Article
    ​ ​Statistical mechanics analysis of sparse data​
    Habeck, M. ​ (2011) 
    Journal of Structural Biology, 173(3) pp. 541​-548​.​ DOI: https://doi.org/10.1016/j.jsb.2010.09.016 
    ​Details  DOI 
  • 2011 | Journal Article
    ​ ​Combining computational modeling with sparse and low-resolution data​
    Habeck, M.   & Nilges, M.​ (2011) 
    Journal of Structural Biology, 173(3) pp. 419​.​ DOI: https://doi.org/10.1016/j.jsb.2011.01.002 
    ​Details  DOI 
  • 2011 | Journal Article
    ​ ​A Blind Deconvolution Approach for Improving the Resolution of Cryo-EM Density Maps​
    Hirsch, M.; Schölkopf, B. & Habeck, M. ​ (2011) 
    Journal of Computational Biology, 18(3) pp. 335​-346​.​ DOI: https://doi.org/10.1089/cmb.2010.0264 
    ​Details  DOI 
  • 2011 | Journal Article
    ​ ​HHfrag: HMM-based fragment detection using HHpred​
    Kalev, I. & Habeck, M. ​ (2011) 
    Bioinformatics, 27(22) pp. 3110​-3116​.​ DOI: https://doi.org/10.1093/bioinformatics/btr541 
    ​Details  DOI 
  • 2012 | Journal Article
    ​ ​Membrane-protein structure determination by solid-state NMR spectroscopy of microcrystals​
    Shahid, S. A.; Bardiaux, B.; Franks, W. T.; Krabben, L.; Habeck, M. ; van Rossum, B.-J. & Linke, D.​ (2012) 
    Nature Methods, 9(12) pp. 1212​-1217​.​ DOI: https://doi.org/10.1038/nmeth.2248 
    ​Details  DOI 
  • 2012 | Journal Article
    ​ ​Structure-Activity Analysis of the Dermcidin-derived Peptide DCD-1L, an Anionic Antimicrobial Peptide Present in Human Sweat​
    Paulmann, M.; Arnold, T.; Linke, D.; Özdirekcan, S.; Kopp, A.; Gutsmann, T. & Kalbacher, H. et al.​ (2012) 
    Journal of Biological Chemistry, 287(11) pp. 8434​-8443​.​ DOI: https://doi.org/10.1074/jbc.M111.332270 
    ​Details  DOI 
  • 2012 | Journal Article
    ​ ​Bayesian Estimation of Free Energies From Equilibrium Simulations​
    Habeck, M. ​ (2012) 
    Physical Review Letters, 109(10) art. 100601​.​ DOI: https://doi.org/10.1103/PhysRevLett.109.100601 
    ​Details  DOI 
  • 2012 | Journal Article
    ​ ​CSB: a Python framework for structural bioinformatics​
    Kalev, I.; Mechelke, M.; Kopec, K. O.; Holder, T.; Carstens, S. & Habeck, M. ​ (2012) 
    Bioinformatics, 28(22) pp. 2996​-2997​.​ DOI: https://doi.org/10.1093/bioinformatics/bts538 
    ​Details  DOI 
  • 2012 | Journal Article
    ​ ​Calibration of Boltzmann distribution priors in Bayesian data analysis​
    Mechelke, M. & Habeck, M. ​ (2012) 
    Physical Review E, 86(6) art. 066705​.​ DOI: https://doi.org/10.1103/PhysRevE.86.066705 
    ​Details  DOI 
  • 2012 | Journal Article | 
    ​ ​Is the C-terminal insertional signal in Gram-negative bacterial outer membrane proteins species-specific or not?​
    Paramasivam, N.; Habeck, M.   & Linke, D.​ (2012) 
    BMC Genomics, 13(1) art. 510​.​ DOI: https://doi.org/10.1186/1471-2164-13-510 
    ​Details  DOI 
  • 2012 | Journal Article | Research Paper
    ​ ​Inferential NMR/X-ray-Based Structure Determination of a Dibenzo[a,d]cycloheptenone Inhibitor-p38a MAP Kinase Complex in Solution​
    Honndorf, V. S.; Coudevylle, N.; Laufer, S.; Becker, S. ; Griesinger, C.   & Habeck, M. ​ (2012) 
    Angewandte Chemie International Edition, 51(10) pp. 2359​-2362​.​ DOI: https://doi.org/10.1002/anie.201105241 
    ​Details  DOI  PMID  PMC  WoS 
  • 2013 | Journal Article
    ​ ​A probabilistic model for secondary structure prediction from protein chemical shifts​
    Mechelke, M. & Habeck, M. ​ (2013) 
    Proteins: Structure, Function, and Bioinformatics, 81(6) pp. 984​-993​.​ DOI: https://doi.org/10.1002/prot.24249 
    ​Details  DOI 
  • 2013 | Journal Article | 
    ​ ​Structures of the human and Drosophila 80S ribosome​
    Anger, A. M.; Armache, J.-P.; Berninghausen, O.; Habeck, M. ; Subklewe, M.; Wilson, D. N. & Beckmann, R.​ (2013) 
    Nature, 497(7447) pp. 80​-85​.​ DOI: https://doi.org/10.1038/nature12104 
    ​Details  DOI 
  • 2013 | Journal Article | 
    ​ ​Confidence-Guided Local Structure Prediction with HHfrag​
    Kalev, I. & Habeck, M. ​ (2013) 
    PLoS ONE, 8(10) art. e76512​.​ DOI: https://doi.org/10.1371/journal.pone.0076512 
    ​Details  DOI  PMID  PMC  WoS 
  • 2013 | Journal Article
    ​ ​Estimation of Interaction Potentials through the Configurational Temperature Formalism​
    Mechelke, M. & Habeck, M. ​ (2013) 
    Journal of Chemical Theory and Computation, 9(12) pp. 5685​-5692​.​ DOI: https://doi.org/10.1021/ct400580p 
    ​Details  DOI  PMID  PMC  WoS 
  • 2014 | Journal Article | 
    ​ ​A derivation of the Grand Canonical Partition Function for systems with a finite number of binding sites using a Markov chain model for the dynamics of single molecules​
    Martini, J. W. R.; Habeck, M.   & Schlather, M.​ (2014) 
    Journal of Mathematical Chemistry, 52(2) pp. 665​-674​.​ DOI: https://doi.org/10.1007/s10910-013-0287-8 
    ​Details  DOI  WoS 
  • 2014 | Journal Article | 
    ​ ​Bayesian Weighting of Statistical Potentials in NMR Structure Calculation​
    Mechelke, M. & Habeck, M. ​ (2014) 
    PLoS ONE, 9(6) art. e100197​.​ DOI: https://doi.org/10.1371/journal.pone.0100197 
    ​Details  DOI  PMID  PMC  WoS 
  • 2014 | Journal Article
    ​ ​Autonomous reconstruction and segmentation of tomographic data​
    Wollgarten, M. & Habeck, M. ​ (2014) 
    Micron, 63 pp. 20​-27​.​ DOI: https://doi.org/10.1016/j.micron.2014.02.005 
    ​Details  DOI  PMID  PMC  WoS 
  • 2014 | Journal Article
    ​ ​Bayesian approach to inverse statistical mechanics​
    Habeck, M. ​ (2014) 
    Physical Review. E, 89(5) art. 052113​.​ DOI: https://doi.org/10.1103/PhysRevE.89.052113 
    ​Details  DOI  PMID  PMC  WoS 
  • 2014 | Journal Article | Letter Note | 
    ​ ​Kinetics or Equilibrium? - A Commentary on a Recent Simulation Study of Semiochemical Dose-Response Curves of Insect Olfactory Sensing​
    Martini, J. W. R. & Habeck, M. ​ (2014) 
    Journal of Chemical Ecology, 40(11-12) pp. 1163​-1164​.​ DOI: https://doi.org/10.1007/s10886-014-0526-x 
    ​Details  DOI  PMID  PMC  WoS 
  • 2015 | Conference Abstract
    ​ ​Maximum entropy reconstruction of protein ensembles from structural data​
    Mechelke, M. & Habeck, M. ​ (2015)
    European Biophysics Journal, 44 ​10th European-Biophysical-Societies-Association (EBSA) European Biophysics Congress​, Dresden, GERMANY.
    New york​: Springer.
    ​Details  WoS 
  • 2015 | Journal Article
    ​ ​Bayesian evidence and model selection​
    Knuth, K. H.; Habeck, M. ; Malakar, N. K.; Mubeen, A. M. & Placek, B.​ (2015) 
    Digital Signal Processing, 47 pp. 50​-67​.​ DOI: https://doi.org/10.1016/j.dsp.2015.06.012 
    ​Details  DOI  WoS 
  • 2015 | Journal Article
    ​ ​Structure and Evolution of N-domains in AAA Metalloproteases​
    Scharfenberg, F.; Serek-Heuberger, J.; Coles, M.; Hartmann, M. D.; Habeck, M. ; Martin, J. & Lupas, A. N. et al.​ (2015) 
    Journal of Molecular Biology, 427(4) pp. 910​-923​.​ DOI: https://doi.org/10.1016/j.jmb.2014.12.024 
    ​Details  DOI 
  • 2015 | Journal Article
    ​ ​Solid-state NMR Study of the YadA Membrane-Anchor Domain in the Bacterial Outer Membrane​
    Shahid, S. A.; Nagaraj, M.; Chauhan, N.; Franks, T. W.; Bardiaux, B.; Habeck, M.   & Orwick-Rydmark, M. et al.​ (2015) 
    Angewandte Chemie. International Edition, 54(43) pp. 12602​-12606​.​ DOI: https://doi.org/10.1002/anie.201505506 
    ​Details  DOI 
  • 2015 | Conference Abstract
    ​ ​Bayesian integrative modeling of macromolecular complexes​
    Joubert, P. & Habeck, M. ​ (2015)
    European Biophysics Journal, 44 ​10th European-Biophysical-Societies-Association (EBSA) European Biophysics Congress​, Dresden, GERMANY.
    New york​: Springer.
    ​Details  WoS 
  • 2015 | Journal Article
    ​ ​Comparison of the kinetics of different Markov models for ligand binding under varying conditions​
    Martini, J. W. R. & Habeck, M. ​ (2015) 
    The Journal of Chemical Physics, 142(9) art. 094104​.​ DOI: https://doi.org/10.1063/1.4908531 
    ​Details  DOI  PMID  PMC  WoS 
  • 2015 | Journal Article
    ​ ​Festkörper‐NMR‐Studien an der Membrananker‐Domäne von YadA in der bakteriellen Außenmembran​
    Shahid, S. A.; Nagaraj, M.; Chauhan, N.; Franks, T. W.; Bardiaux, B.; Habeck, M.   & Orwick-Rydmark, M. et al.​ (2015) 
    Angewandte Chemie International Edition, 54(43) pp. 12602​-12606​.​ DOI: https://doi.org/10.1002/ange.201505506 
    ​Details  DOI  PMID  PMC  WoS 
  • 2015 | Journal Article
    ​ ​Bayesian Inference of Initial Models in Cryo-Electron Microscopy Using Pseudo-atoms​
    Joubert, P. & Habeck, M. ​ (2015) 
    Biophysical Journal, 108(5) pp. 1165​-1175​.​ DOI: https://doi.org/10.1016/j.bpj.2014.12.054 
    ​Details  DOI  PMID  PMC  WoS 
  • 2015 | Journal Article
    ​ ​Hybrid Structure of the Type 1 Pilus of Uropathogenic Escherichia coli​
    Habenstein, B. ; Loquet, A.; Hwang, S.; Giller, K. ; Vasa, S. K.; Becker, S. & Habeck, M.  et al.​ (2015) 
    Angewandte Chemie International Edition, 54(40) pp. 11691​-11695​.​ DOI: https://doi.org/10.1002/anie.201505065 
    ​Details  DOI  PMID  PMC  WoS 
  • 2016 | Conference Paper
    ​ ​A probabilistic model for detecting rigid domains in protein structures​
    Thach Nguyen, T. N. & Habeck, M. ​ (2016)
    Bioinformatics, 32(17) pp. 710​-717. ​15th European Conference on Computational Biology (ECCB)​, The Hague, NETHERLANDS.
    Oxford​: Oxford Univ Press. DOI: https://doi.org/10.1093/bioinformatics/btw442 
    ​Details  DOI  PMID  PMC  WoS 
  • 2016 | Journal Article
    ​ ​Cooperative binding: a multiple personality​
    Martini, J. W. R.; Diambra, L. & Habeck, M. ​ (2016) 
    Journal of Mathematical Biology, 72(7) pp. 1747​-1774​.​ DOI: https://doi.org/10.1007/s00285-015-0922-z 
    ​Details  DOI  PMID  PMC  WoS 
  • 2016 | Journal Article | Research Paper
    ​ ​The adaptor protein CIN85 assembles intracellular signaling clusters for B cell activation​
    Kühn, J. ; Wong, L. E. ; Pirkuliyeva, S. ; Schulz, K. ; Schwiegk, C. ; Fünfgeld, K. G.   & Keppler, S. et al.​ (2016) 
    Science Signaling, 9(434) art. ra66​.​ DOI: https://doi.org/10.1126/scisignal.aad6275 
    ​Details  DOI  PMID  PMC  WoS 
  • 2016 | Journal Article | 
    ​ ​Inferential Structure Determination of Chromosomes from Single-Cell Hi-C Data​
    Carstens, S.; Nilges, M. & Habeck, M. ​ (2016) 
    PLoS Computational Biology, 12(12) art. e1005292​.​ DOI: https://doi.org/10.1371/journal.pcbi.1005292 
    ​Details  DOI  PMID  PMC  WoS 
  • 2017 | Journal Article
    ​ ​Bayesian Modeling of Biomolecular Assemblies with Cryo-EM Maps​
    Habeck, M. ​ (2017) 
    Frontiers in Molecular Biosciences, 4.​ DOI: https://doi.org/10.3389/fmolb.2017.00015 
    ​Details  DOI 
  • 2017 | Journal Article | 
    ​ ​Data-driven coarse graining of large biomolecular structures​
    Chen, Y.-L. & Habeck, M. ​ (2017) 
    PloS one, 12(8) art. e0183057​.​ DOI: https://doi.org/10.1371/journal.pone.0183057 
    ​Details  DOI  PMID  PMC 
  • 2017 | Journal Article | 
    ​ ​An evolutionarily conserved glycine-tyrosine motif forms a folding core in outer membrane proteins.​
    Michalik, M.; Orwick-Rydmark, M.; Habeck, M. ; Alva, V.; Arnold, T. & Linke, D.​ (2017) 
    PLoS One, 12(8) art. e0182016​.​ DOI: https://doi.org/10.1371/journal.pone.0182016 
    ​Details  DOI  PMID  PMC 
  • 2018 | Journal Article
    ​ ​A probabilistic network model for structural transitions in biomolecules​
    Habeck, M.   & Nguyen, T.​ (2018) 
    Proteins, 86(6) pp. 634​-643​.​ DOI: https://doi.org/10.1002/prot.25490 
    ​Details  DOI 
  • 2019 | Journal Article
    ​ ​Bayesian Structural Modeling of Large Biomolecular Systems​
    Habeck, M. ​ (2019) 
    Biophysical Journal, 116(3) pp. 330a​.​ DOI: https://doi.org/10.1016/j.bpj.2018.11.1793 
    ​Details  DOI 
  • 2019 | Journal Article | 
    ​ ​Auto-regulation of Rab5 GEF activity in Rabex5 by allosteric structural changes, catalytic core dynamics and ubiquitin binding​
    Lauer, J.; Segeletz, S.; Cezanne, A.; Guaitoli, G.; Raimondi, F.; Gentzel, M. & Alva, V. et al.​ (2019) 
    eLife, 8.​ DOI: https://doi.org/10.7554/eLife.46302 
    ​Details  DOI 

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