Rodolfo Briones

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  • 2019 | Journal Article
    ​ ​Gromaps: A Gromacs-Based Toolset to Analyse Density Maps Derived from Molecular Dynamics Simulations​
    Briones, R. ; Blau, C. ; Kutzner, C.; de Groot, B. L.   & Aponte-Santamaría, C.​ (2019) 
    Biophysical Journal, 116(3) pp. 142a​-143a​.​ DOI: https://doi.org/10.1016/j.bpj.2018.11.790 
    ​Details  DOI 
  • 2019 | Journal Article
    ​ ​GROmaρs: A GROMACS-Based Toolset to Analyze Density Maps Derived from Molecular Dynamics Simulations​
    Briones, R. ; Blau, C. ; Kutzner, C.; de Groot, B. L.   & Aponte-Santamaría, C.​ (2019) 
    Biophysical Journal, 116(1) pp. 4​-11​.​ DOI: https://doi.org/10.1016/j.bpj.2018.11.3126 
    ​Details  DOI 
  • 2017 | Journal Article
    ​ ​Gating Charge Calculations by Computational Electrophysiology Simulations​
    Machtens, J.-P.; Briones, R. ; Alleva, C.; de Groot, B. L.   & Fahlke, C.​ (2017) 
    Biophysical Journal, 112(7) pp. 1396​-1405​.​ DOI: https://doi.org/10.1016/j.bpj.2017.02.016 
    ​Details  DOI 
  • 2017 | Journal Article
    ​ ​Localization and Ordering of Lipids Around Aquaporin-0: Protein and Lipid Mobility Effects​
    Briones, R. ; Aponte-Santamaría, C. & de Groot, B. L. ​ (2017) 
    Frontiers in Physiology, 8.​ DOI: https://doi.org/10.3389/fphys.2017.00124 
    ​Details  DOI 
  • 2016 | Journal Article
    ​ ​Gating Charge Calculations: Probing Voltage-Sensing Proteins through Computational Electrophysiology​
    Machtens, J.-P.; Briones, R. ; de Groot, B. L.   & Fahlke, C.​ (2016) 
    Biophysical Journal, 110(3) pp. 106a​.​ DOI: https://doi.org/10.1016/j.bpj.2015.11.628 
    ​Details  DOI 
  • 2016 | Journal Article | Research Paper | 
    ​ ​Voltage Dependence of Conformational Dynamics and Subconducting States of VDAC-1​
    Briones, R. ; Weichbrodt, C. ; Paltrinieri, L.; Mey, I. ; Villinger, S. ; Giller, K.   & Lange, A.  et al.​ (2016) 
    Biophysical Journal, 111(6) pp. 1223​-1234​.​ DOI: https://doi.org/10.1016/j.bpj.2016.08.007 
    ​Details  DOI  PMID  PMC  WoS 
  • 2015 | Journal Article
    ​ ​The membrane anchor of the transcriptional activator SREBP is characterized by intrinsic conformational flexibility​
    Linser, R. ; Salvi, N.; Briones, R. ; Rovó, P.; de Groot, B. L.   & Wagner, G.​ (2015) 
    Proceedings of the National Academy of Sciences of the United States of America, 112(40) pp. 12390​-12395​.​ DOI: https://doi.org/10.1073/pnas.1513782112 
    ​Details  DOI 
  • 2015 | Journal Article
    ​ ​Mechanisms of Anion Conduction by Coupled Glutamate Transporters​
    Machtens, J.-P.; Kortzak, D.; Lansche, C.; Leinenweber, A.; Kilian, P.; Begemann, B. & Zachariae, U. et al.​ (2015) 
    Cell, 160(3) pp. 542​-553​.​ DOI: https://doi.org/10.1016/j.cell.2014.12.035 
    ​Details  DOI 
  • 2014 | Journal Article
    ​ ​Anion Permeation through Excitatory Amino Acid Transporters​
    Machtens, J.-P.; Lansche, C.; Leinenweber, A.; Kilian, P.; Begemann, B.; Zachariae, U. & Ewers, D. et al.​ (2014) 
    Biophysical Journal, 106(2) pp. 149a​.​ DOI: https://doi.org/10.1016/j.bpj.2013.11.858 
    ​Details  DOI 
  • 2013 | Journal Article | 
    ​ ​Computational analysis of local membrane properties​
    Gapsys, V. ; de Groot, B. L.   & Briones, R. ​ (2013) 
    Journal of Computer-Aided Molecular Design, 27(10) pp. 845​-858​.​ DOI: https://doi.org/10.1007/s10822-013-9684-0 
    ​Details  DOI 
  • 2012 | Journal Article
    ​ ​Molecular driving forces defining lipid positions around aquaporin-0​
    Aponte-Santamaria, C.; Briones, R. ; Schenk, A. D.; Walz, T. & de Groot, B. L. ​ (2012) 
    Proceedings of the National Academy of Sciences of the United States of America, 109(25) pp. 9887​-9892​.​ DOI: https://doi.org/10.1073/pnas.1121054109 
    ​Details  DOI 
  • 2012 | Journal Article | Research Paper | 
    ​ ​Partial Least-Squares Functional Mode Analysis: Application to the Membrane Proteins AQP1, Aqy1, and CLC-ec1​
    Krivobokova, T. ; Briones, R. ; Hub, J. S. ; Munk, A.   & Groot, B. L. de ​ (2012) 
    Biophysical Journal, 103(4) pp. 786​-796​.​ DOI: https://doi.org/10.1016/j.bpj.2012.07.022 
    ​Details  DOI  PMID  PMC  WoS 
  • 2012 | Journal Article | Research Paper
    ​ ​beta-Barrel Mobility Underlies Closure of the Voltage-Dependent Anion Channel​
    Zachariae, U.; Schneider, R. ; Briones, R. ; Gattin, Z. ; Demers, J.-P.; Giller, K.   & Maier, E. et al.​ (2012) 
    Structure, 20(9) pp. 1540​-1549​.​ DOI: https://doi.org/10.1016/j.str.2012.06.015 
    ​Details  DOI  PMID  PMC  WoS 
  • 2010 | Journal Article | Research Paper
    ​ ​Functional dynamics in the voltage-dependent anion channel​
    Villinger, S. ; Briones, R. ; Giller, K. ; Zachariae, U.; Lange, A. ; Groot, B. L. de   & Griesinger, C.  et al.​ (2010) 
    Proceedings of the National Academy of Sciences, 107(52) pp. 22546​-22551​.​ DOI: https://doi.org/10.1073/pnas.1012310108 
    ​Details  DOI  PMID  PMC  WoS 

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https://publications.goettingen-research-online.de URI: /cris/rp/rp08178
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