Dr. Johannes Söding

1-80 of 80
 
The bibliographical data in your publication list are complete
You can correct existing data in the blue highlighted fields.To do this, please click on the coloured field. It is not possible to delete data here.
Fields that are not marked in colour (e. g. the authors) can be edited using the input form. To do so, click on the in front of the respective publication.
The bibliographic data in your publication list may be incomplete. You can
  • add any missing data in the fields marked in red or
  • correct existing data in the blue highlighted fields.
To do this, please click on the coloured field. It is not possible to delete data here.
Fields that are not marked in colour (e. g. the authors) can be edited using the input form. To do so, click on the in front of the respective publication.
Check/Uncheck all
  • 2022 | Journal Article | Research Paper
    ​ ​Cln5 represents a new type of cysteine-based S -depalmitoylase linked to neurodegeneration​
    Luebben, A. V.; Bender, D.; Becker, S.; Crowther, L. M.; Erven, I.; Hofmann, K. & Söding, J.  et al.​ (2022) 
    Science Advances, 8(15).​ DOI: https://doi.org/10.1126/sciadv.abj8633 
    ​Details  DOI  PMID  PMC 
  • 2021 | Journal Article
    ​ ​Fast and sensitive taxonomic assignment to metagenomic contigs​
    Mirdita, M.; Steinegger, M.; Breitwieser, F.; Söding, J.   & Levy Karin, E.​ (2021) 
    Bioinformatics, 37(18) pp. 3029​-3031​.​ DOI: https://doi.org/10.1093/bioinformatics/btab184 
    ​Details  DOI 
  • 2021 | Journal Article
    ​ ​SpacePHARER: sensitive identification of phages from CRISPR spacers in prokaryotic hosts​
    Zhang, R.; Mirdita, M.; Levy Karin, E.; Norroy, C.; Galiez, C. & Söding, J. ​ (2021) 
    Bioinformatics, 37(19) pp. 3364​-3366​.​ DOI: https://doi.org/10.1093/bioinformatics/btab222 
    ​Details  DOI 
  • 2021 | Journal Article
    ​ ​Thermodynamic modeling reveals widespread multivalent binding by RNA-binding proteins​
    Sohrabi-Jahromi, S. & Söding, J. ​ (2021) 
    Bioinformatics, 37(Supplement_1) pp. i308​-i316​.​ DOI: https://doi.org/10.1093/bioinformatics/btab300 
    ​Details  DOI 
  • 2021 | Journal Article | 
    ​ ​Evidence for additive and synergistic action of mammalian enhancers during cell fate determination​
    Choi, J.; Lysakovskaia, K.; Stik, G.; Demel, C.; Söding, J. ; Tian, T. V & Graf, T. et al.​ (2021) 
    eLife, 10.​ DOI: https://doi.org/10.7554/eLife.65381 
    ​Details  DOI 
  • 2020 | Journal Article
    ​ ​A High-Throughput Screen for Transcription Activation Domains Reveals Their Sequence Features and Permits Prediction by Deep Learning​
    Erijman, A.; Kozlowski, L.; Sohrabi-Jahromi, S.; Fishburn, J.; Warfield, L.; Schreiber, J. & Noble, W. S. et al.​ (2020) 
    Molecular Cell, 78(5) pp. 890​-902.e6​.​ DOI: https://doi.org/10.1016/j.molcel.2020.04.020 
    ​Details  DOI 
  • 2020 | Journal Article
    ​ ​Mechanisms for Active Regulation of Biomolecular Condensates​
    Söding, J. ; Zwicker, D.; Sohrabi-Jahromi, S.; Boehning, M. & Kirschbaum, J.​ (2020) 
    Trends in Cell Biology, 30(1) pp. 4​-14​.​ DOI: https://doi.org/10.1016/j.tcb.2019.10.006 
    ​Details  DOI 
  • 2020 | Journal Article | 
    ​ ​MetaEuk—sensitive, high-throughput gene discovery, and annotation for large-scale eukaryotic metagenomics​
    Levy Karin, E.; Mirdita, M. & Söding, J. ​ (2020) 
    Microbiome, 8(1) art. 48​.​ DOI: https://doi.org/10.1186/s40168-020-00808-x 
    ​Details  DOI 
  • 2019 | Journal Article | 
    ​ ​Lysine/RNA-interactions drive and regulate biomolecular condensation​
    Ukmar-Godec, T.; Hutten, S.; Grieshop, M. P.; Rezaei-Ghaleh, N. ; Cima-Omori, M.-S.; Biernat, J. & Mandelkow, E. et al.​ (2019) 
    Nature Communications, 10(1) art. 2909​.​ DOI: https://doi.org/10.1038/s41467-019-10792-y 
    ​Details  DOI  PMID  PMC 
  • 2019 | Journal Article
    ​ ​Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold​
    Steinegger, M.; Mirdita, M. & Söding, J. ​ (2019) 
    Nature Methods, 16(7) pp. 603​-606​.​ DOI: https://doi.org/10.1038/s41592-019-0437-4 
    ​Details  DOI 
  • 2019 | Journal Article
    ​ ​PROSSTT: probabilistic simulation of single-cell RNA-seq data for complex differentiation processes​
    Papadopoulos, N.; Gonzalo, P. R & Söding, J. ​ (2019) 
    Bioinformatics, 35(18) pp. 3517​-3519​.​ DOI: https://doi.org/10.1093/bioinformatics/btz078 
    ​Details  DOI 
  • 2019 | Journal Article
    ​ ​MMseqs2 desktop and local web server app for fast, interactive sequence searches​
    Mirdita, M.; Steinegger, M. & Söding, J. ​ (2019) 
    Bioinformatics, 35(16) pp. 2856​-2858​.​ DOI: https://doi.org/10.1093/bioinformatics/bty1057 
    ​Details  DOI 
  • 2019 | Journal Article | 
    ​ ​HH-suite3 for fast remote homology detection and deep protein annotation​
    Steinegger, M.; Meier, M.; Mirdita, M.; Vöhringer, H.; Haunsberger, S. J. & Söding, J. ​ (2019) 
    BMC Bioinformatics, 20(1) art. 473​.​ DOI: https://doi.org/10.1186/s12859-019-3019-7 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Bayesian multiple logistic regression for case-control GWAS​
    Banerjee, S.; Zeng, L.; Schunkert, H. & Söding, J. ​ (2018) 
    PLOS Genetics, 14(12) pp. e1007856​.​ DOI: https://doi.org/10.1371/journal.pgen.1007856 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core​
    Zimmermann, L.; Stephens, A.; Nam, S.-Z.; Rau, D.; Kübler, J.; Lozajic, M. & Gabler, F. et al.​ (2018) 
    Journal of Molecular Biology, 430(15) pp. 2237​-2243​.​ DOI: https://doi.org/10.1016/j.jmb.2017.12.007 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Synthetic protein alignments by CCMgen quantify noise in residue-residue contact prediction​
    Vorberg, S.; Seemayer, S. & Söding, J. ​ (2018) 
    PLOS Computational Biology, 14(11) pp. e1006526​.​ DOI: https://doi.org/10.1371/journal.pcbi.1006526 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​The BaMM web server for de-novo motif discovery and regulatory sequence analysis​
    Kiesel, A.; Roth, C.; Ge, W.; Wess, M.; Meier, M. & Söding, J. ​ (2018) 
    Nucleic Acids Research, 46(W1) pp. W215​-W220​.​ DOI: https://doi.org/10.1093/nar/gky431 
    ​Details  DOI 
  • 2018 | Journal Article | 
    ​ ​Clustering huge protein sequence sets in linear time​
    Steinegger, M. & Söding, J. ​ (2018) 
    Nature Communications, 9(1) art. 2542​.​ DOI: https://doi.org/10.1038/s41467-018-04964-5 
    ​Details  DOI 
  • 2017 | Journal Article
    ​ ​WIsH: who is the host? Predicting prokaryotic hosts from metagenomic phage contigs​
    Galiez, C.; Siebert, M.; Enault, F.; Vincent, J. & Söding, J. ​ (2017) 
    Bioinformatics, 33(19) pp. 3113​-3114​.​ DOI: https://doi.org/10.1093/bioinformatics/btx383 
    ​Details  DOI 
  • 2017 | Journal Article
    ​ ​MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets​
    Steinegger, M. & Söding, J. ​ (2017) 
    Nature Biotechnology, 35(11) pp. 1026​-1028​.​ DOI: https://doi.org/10.1038/nbt.3988 
    ​Details  DOI 
  • 2017 | Journal Article
    ​ ​Big-data approaches to protein structure prediction​
    Söding, J. ​ (2017) 
    Science, 355(6322) pp. 248​-249​.​ DOI: https://doi.org/10.1126/science.aal4512 
    ​Details  DOI 
  • 2017 | Journal Article
    ​ ​Genome-wide Analysis of RNA Polymerase II Termination at Protein-Coding Genes​
    Baejen, C.; Andreani, J.; Torkler, P.; Battaglia, S.; Schwalb, B.; Lidschreiber, M. & Maier, K. C. et al.​ (2017) 
    Molecular Cell, 66(1) pp. 38​-49​.​ DOI: https://doi.org/10.1016/j.molcel.2017.02.009 
    ​Details  DOI  PMID  PMC 
  • 2016 | Journal Article
    ​ ​Modulations of DNA Contacts by Linker Histones and Post-translational Modifications Determine the Mobility and Modifiability of Nucleosomal H3 Tails​
    Stützer, A.; Liokatis, S.; Kiesel, A.; Schwarzer, D.; Sprangers, R.; Söding, J.   & Selenko, P. et al.​ (2016) 
    Molecular Cell, 61(2) pp. 247​-259​.​ DOI: https://doi.org/10.1016/j.molcel.2015.12.015 
    ​Details  DOI 
  • 2016 | Journal Article
    ​ ​The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis​
    Alva, V.; Nam, S.-Z.; Söding, J.   & Lupas, A. N.​ (2016) 
    Nucleic Acids Research, 44(W1) pp. W410​-W415​.​ DOI: https://doi.org/10.1093/nar/gkw348 
    ​Details  DOI 
  • 2016 | Journal Article
    ​ ​MMseqs software suite for fast and deep clustering and searching of large protein sequence sets​
    Hauser, M.; Steinegger, M. & Söding, J. ​ (2016) 
    Bioinformatics, 32(9) pp. 1323​-1330​.​ DOI: https://doi.org/10.1093/bioinformatics/btw006 
    ​Details  DOI 
  • 2016 | Journal Article
    ​ ​Uniclust databases of clustered and deeply annotated protein sequences and alignments​
    Mirdita, M.; von den Driesch, L.; Galiez, C.; Martin, M. J.; Söding, J.   & Steinegger, M.​ (2016) 
    Nucleic Acids Research, 45(D1) pp. D170​-D176​.​ DOI: https://doi.org/10.1093/nar/gkw1081 
    ​Details  DOI 
  • 2016 | Journal Article
    ​ ​Bayesian Markov models consistently outperform PWMs at predicting motifs in nucleotide sequences​
    Siebert, M. & Söding, J. ​ (2016) 
    Nucleic Acids Research, 44(13) pp. 6055​-6069​.​ DOI: https://doi.org/10.1093/nar/gkw521 
    ​Details  DOI 
  • 2015 | Journal Article
    ​ ​bbcontacts: prediction of β -strand pairing from direct coupling patterns​
    Andreani, J. & Söding, J. ​ (2015) 
    Bioinformatics, 31(11) pp. 1729​-1737​.​ DOI: https://doi.org/10.1093/bioinformatics/btv041 
    ​Details  DOI 
  • 2015 | Journal Article
    ​ ​Automatic Prediction of Protein 3D Structures by Probabilistic Multi-template Homology Modeling​
    Meier, A. & Söding, J. ​ (2015) 
    PLOS Computational Biology, 11(10) pp. e1004343​.​ DOI: https://doi.org/10.1371/journal.pcbi.1004343 
    ​Details  DOI 
  • 2015 | Journal Article | 
    ​ ​A vocabulary of ancient peptides at the origin of folded proteins​
    Alva, V.; Söding, J.   & Lupas, A. N.​ (2015) 
    eLife, 4.​ DOI: https://doi.org/10.7554/eLife.09410 
    ​Details  DOI 
  • 2014 | Journal Article
    ​ ​In Vivo Ligands of MDA5 and RIG-I in Measles Virus-Infected Cells​
    Runge, S.; Sparrer, K. M. J.; Lässig, C.; Hembach, K.; Baum, A.; García-Sastre, A. & Söding, J.  et al.​ (2014) 
    PLoS Pathogens, 10(4) pp. e1004081​.​ DOI: https://doi.org/10.1371/journal.ppat.1004081 
    ​Details  DOI 
  • 2014 | Journal Article
    ​ ​RECQL5 Controls Transcript Elongation and Suppresses Genome Instability Associated with Transcription Stress​
    Saponaro, M.; Kantidakis, T.; Mitter, R.; Kelly, G.; Heron, M.; Williams, H. & Söding, J.  et al.​ (2014) 
    Cell, 157(5) pp. 1037​-1049​.​ DOI: https://doi.org/10.1016/j.cell.2014.03.048 
    ​Details  DOI 
  • 2014 | Journal Article
    ​ ​CCMpred—fast and precise prediction of protein residue–residue contacts from correlated mutations​
    Seemayer, S.; Gruber, M. & Söding, J. ​ (2014) 
    Bioinformatics, 30(21) pp. 3128​-3130​.​ DOI: https://doi.org/10.1093/bioinformatics/btu500 
    ​Details  DOI 
  • 2014 | Journal Article
    ​ ​Context similarity scoring improves protein sequence alignments in the midnight zone​
    Meier, A. & Söding, J. ​ (2014) 
    Bioinformatics, 31(5) pp. 674​-681​.​ DOI: https://doi.org/10.1093/bioinformatics/btu697 
    ​Details  DOI 
  • 2013 | Journal Article
    ​ ​Eph receptors and ephrin class B ligands are expressed at tissue boundaries in Hydra vulgaris​
    Tischer, S.; Reineck, M.; Söding, J. ; Münder, S. & Böttger, A.​ (2013) 
    The International Journal of Developmental Biology, 57(9-10) pp. 759​-765​.​ DOI: https://doi.org/10.1387/ijdb.130158ab 
    ​Details  DOI 
  • 2013 | Conference Abstract
    ​ ​Coupling of mRNA synthesis and export by direct binding of TREX to the phospho-CTD of RNA Polymerase II​
    Meinel, D. M.; Burkert-Kautzsch, C.; Kieser, A.; O'Duibhir, E.; Siebert, M.; Mayer, A. & Cramer, P.  et al.​ (2013)
    ​Yeast. , Frankfurt/Main, Germany. DOI: https://doi.org/10.1002/yea.2972 
    ​Details  DOI 
  • 2013 | Journal Article | 
    ​ ​kClust: fast and sensitive clustering of large protein sequence databases​
    Hauser, M.; Mayer, C. E & Söding, J. ​ (2013) 
    BMC Bioinformatics, 14(1) art. 248​.​ DOI: https://doi.org/10.1186/1471-2105-14-248 
    ​Details  DOI 
  • 2013 | Journal Article
    ​ ​Recruitment of TREX to the Transcription Machinery by Its Direct Binding to the Phospho-CTD of RNA Polymerase II​
    Meinel, D. M.; Burkert-Kautzsch, C.; Kieser, A.; O'Duibhir, E.; Siebert, M.; Mayer, A. & Cramer, P.  et al.​ (2013) 
    PLoS Genetics, 9(11) art. e1003914​.​ DOI: https://doi.org/10.1371/journal.pgen.1003914 
    ​Details  DOI  PMID  PMC  WoS 
  • 2012 | Journal Article
    ​ ​DBIRD complex integrates alternative mRNA splicing with RNA polymerase II transcript elongation​
    Close, P.; East, P.; Dirac-Svejstrup, A. B.; Hartmann, H.; Heron, M.; Maslen, S. & Chariot, A. et al.​ (2012) 
    Nature, 484(7394) pp. 386​-389​.​ DOI: https://doi.org/10.1038/nature10925 
    ​Details  DOI 
  • 2012 | Journal Article
    ​ ​Discriminative modelling of context-specific amino acid substitution probabilities​
    Angermüller, C.; Biegert, A. & Söding, J. ​ (2012) 
    Bioinformatics, 28(24) pp. 3240​-3247​.​ DOI: https://doi.org/10.1093/bioinformatics/bts622 
    ​Details  DOI 
  • 2012 | Journal Article
    ​ ​The XXmotif web server for eXhaustive, weight matriX-based motif discovery in nucleotide sequences​
    Luehr, S.; Hartmann, H. & Söding, J. ​ (2012) 
    Nucleic Acids Research, 40(W1) pp. W104​-W109​.​ DOI: https://doi.org/10.1093/nar/gks602 
    ​Details  DOI 
  • 2012 | Journal Article
    ​ ​P -value-based regulatory motif discovery using positional weight matrices​
    Hartmann, H.; Guthöhrlein, E. W.; Siebert, M.; Luehr, S. & Söding, J. ​ (2012) 
    Genome Research, 23(1) pp. 181​-194​.​ DOI: https://doi.org/10.1101/gr.139881.112 
    ​Details  DOI 
  • 2011 | Journal Article
    ​ ​Different Binding Properties and Function of CXXC Zinc Finger Domains in Dnmt1 and Tet1​
    Frauer, C.; Rottach, A.; Meilinger, D.; Bultmann, S.; Fellinger, K.; Hasenöder, S. & Wang, M. et al.​ (2011) 
    PLoS ONE, 6(2) pp. e16627​.​ DOI: https://doi.org/10.1371/journal.pone.0016627 
    ​Details  DOI 
  • 2011 | Journal Article
    ​ ​Protein sequence comparison and fold recognition: progress and good-practice benchmarking​
    Söding, J.   & Remmert, M.​ (2011) 
    Current Opinion in Structural Biology, 21(3) pp. 404​-411​.​ DOI: https://doi.org/10.1016/j.sbi.2011.03.005 
    ​Details  DOI 
  • 2011 | Journal Article
    ​ ​The Mre11:Rad50 Structure Shows an ATP-Dependent Molecular Clamp in DNA Double-Strand Break Repair​
    Lammens, K.; Bemeleit, D.; Möckel, C.; Clausing, E.; Schele, A.; Hartung, S. & Schiller, C. et al.​ (2011) 
    Cell, 145(1) pp. 54​-66​.​ DOI: https://doi.org/10.1016/j.cell.2011.02.038 
    ​Details  DOI 
  • 2011 | Journal Article
    ​ ​HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment​
    Remmert, M.; Biegert, A.; Hauser, A. & Söding, J. ​ (2011) 
    Nature Methods, 9(2) pp. 173​-175​.​ DOI: https://doi.org/10.1038/nmeth.1818 
    ​Details  DOI 
  • 2011 | Journal Article
    ​ ​The MOF-containing NSL complex associates globally with housekeeping genes, but activates only a defined subset​
    Feller, C.; Prestel, M.; Hartmann, H.; Straub, T.; Söding, J.   & Becker, P. B.​ (2011) 
    Nucleic Acids Research, 40(4) pp. 1509​-1522​.​ DOI: https://doi.org/10.1093/nar/gkr869 
    ​Details  DOI 
  • 2011 | Journal Article
    ​ ​Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega​
    Sievers, F.; Wilm, A.; Dineen, D.; Gibson, T. J; Karplus, K.; Li, W. & Lopez, R. et al.​ (2011) 
    Molecular Systems Biology, 7(1) pp. 539​.​ DOI: https://doi.org/10.1038/msb.2011.75 
    ​Details  DOI 
  • 2010 | Journal Article
    ​ ​Of Bits and Bugs — On the Use of Bioinformatics and a Bacterial Crystal Structure to Solve a Eukaryotic Repeat-Protein Structure​
    Graebsch, A.; Roche, S.; Kostrewa, D.; Söding, J.   & Niessing, D.​ (2010) 
    PLoS ONE, 5(10) pp. e13402​.​ DOI: https://doi.org/10.1371/journal.pone.0013402 
    ​Details  DOI 
  • 2010 | Journal Article
    ​ ​Evolution of Outer Membrane β-Barrels from an Ancestral ββ Hairpin​
    Remmert, M.; Biegert, A.; Linke, D.; Lupas, A. N. & Söding, J. ​ (2010) 
    Molecular Biology and Evolution, 27(6) pp. 1348​-1358​.​ DOI: https://doi.org/10.1093/molbev/msq017 
    ​Details  DOI 
  • 2010 | Journal Article
    ​ ​Localization of eukaryote-specific ribosomal proteins in a 5.5-A cryo-EM map of the 80S eukaryotic ribosome​
    Armache, J.-P.; Jarasch, A.; Anger, A. M.; Villa, E.; Becker, T.; Bhushan, S. & Jossinet, F. et al.​ (2010) 
    Proceedings of the National Academy of Sciences of the United States of America, 107(46) pp. 19754​-19759​.​ DOI: https://doi.org/10.1073/pnas.1010005107 
    ​Details  DOI 
  • 2009 | Journal Article
    ​ ​Sequence context-specific profiles for homology searching​
    Biegert, A. & Söding, J. ​ (2009) 
    Proceedings of the National Academy of Sciences of the United States of America, 106(10) pp. 3770​-3775​.​ DOI: https://doi.org/10.1073/pnas.0810767106 
    ​Details  DOI 
  • 2009 | Journal Article
    ​ ​Fast and accurate automatic structure prediction with HHpred​
    Hildebrand, A.; Remmert, M.; Biegert, A. & Söding, J. ​ (2009) 
    Proteins: Structure, Function, and Bioinformatics, 77(S9) pp. 128​-132​.​ DOI: https://doi.org/10.1002/prot.22499 
    ​Details  DOI 
  • 2009 | Journal Article
    ​ ​HHomp—prediction and classification of outer membrane proteins​
    Remmert, M.; Linke, D.; Lupas, A. N. & Söding, J. ​ (2009) 
    Nucleic Acids Research, 37(suppl_2) pp. W446​-W451​.​ DOI: https://doi.org/10.1093/nar/gkp325 
    ​Details  DOI 
  • 2008 | Journal Article
    ​ ​Prediction of protein functional residues from sequence by probability density estimation​
    Fischer, J. D.; Mayer, C. E. & Söding, J. ​ (2008) 
    Bioinformatics, 24(5) pp. 613​-620​.​ DOI: https://doi.org/10.1093/bioinformatics/btm626 
    ​Details  DOI 
  • 2008 | Journal Article
    ​ ​De novo identification of highly diverged protein repeats by probabilistic consistency​
    Biegert, A. & Söding, J. ​ (2008) 
    Bioinformatics, 24(6) pp. 807​-814​.​ DOI: https://doi.org/10.1093/bioinformatics/btn039 
    ​Details  DOI 
  • 2008 | Journal Article
    ​ ​Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors​
    Bateman, A.; Finn, R. D.; Sims, P. J.; Wiedmer, T.; Biegert, A. & Söding, J. ​ (2008) 
    Bioinformatics, 25(2) pp. 159​-162​.​ DOI: https://doi.org/10.1093/bioinformatics/btn595 
    ​Details  DOI 
  • 2008 | Journal Article
    ​ ​Evolution of the β-propeller fold​
    Chaudhuri, I.; Söding, J.   & Lupas, A. N.​ (2008) 
    Proteins: Structure, Function, and Bioinformatics, 71(2) pp. 795​-803​.​ DOI: https://doi.org/10.1002/prot.21764 
    ​Details  DOI 
  • 2008 | Journal Article | 
    ​ ​PDBalert: automatic, recurrent remote homology tracking and protein structure prediction​
    Agarwal, V.; Remmert, M.; Biegert, A. & Söding, J. ​ (2008) 
    BMC Structural Biology, 8(1) art. 51​.​ DOI: https://doi.org/10.1186/1472-6807-8-51 
    ​Details  DOI 
  • 2007 | Journal Article
    ​ ​Observation of the Magneto-Optical Radiation Force by Laser Spectroscopy​
    Söding, J. ; Grimm, R.; Kowalski, J. ; Ovchinnikov, Y. B & Sidorov, A. I​ (2007) 
    EPL, 20(2) pp. 101​-106​.​ DOI: https://doi.org/10.1209/0295-5075/20/2/002 
    ​Details  DOI 
  • 2007 | Journal Article
    ​ ​ScbA from Streptomyces coelicolor A3(2) has homology to fatty acid synthases and is able to synthesize γ-butyrolactones​
    Hsiao, N.-H.; Söding, J. ; Linke, D.; Lange, C.; Hertweck, C.; Wohlleben, W. & Takano, E.​ (2007) 
    Microbiology, 153(5) pp. 1394​-1404​.​ DOI: https://doi.org/10.1099/mic.0.2006/004432-0 
    ​Details  DOI 
  • 2007 | Journal Article
    ​ ​What is the value of automatic protein structure prediction?​
    Söding, J. ​ (2007) 
    Acta Crystallographica Section A Foundations of Crystallography, 63(a1) pp. s10​-s10​.​ DOI: https://doi.org/10.1107/S0108767307099801 
    ​Details  DOI 
  • 2007 | Journal Article | 
    ​ ​TPRpred: a tool for prediction of TPR-, PPR- and SEL1-like repeats from protein sequences​
    Karpenahalli, M. R; Lupas, A. N & Söding, J. ​ (2007) 
    BMC Bioinformatics, 8(1) art. 2​.​ DOI: https://doi.org/10.1186/1471-2105-8-2 
    ​Details  DOI 
  • 2007 | Journal Article | 
    ​ ​On the origin of the histone fold​
    Alva, V.; Ammelburg, M.; Söding, J.   & Lupas, A. N.​ (2007) 
    BMC Structural Biology, 7(1) art. 17​.​ DOI: https://doi.org/10.1186/1472-6807-7-17 
    ​Details  DOI 
  • 2006 | Journal Article
    ​ ​Comparative analysis of coiled-coil prediction methods​
    Gruber, M.; Söding, J.   & Lupas, A. N.​ (2006) 
    Journal of Structural Biology, 155(2) pp. 140​-145​.​ DOI: https://doi.org/10.1016/j.jsb.2006.03.009 
    ​Details  DOI 
  • 2006 | Journal Article
    ​ ​HHsenser: exhaustive transitive profile search using HMM-HMM comparison​
    Söding, J. ; Remmert, M.; Biegert, A. & Lupas, A. N.​ (2006) 
    Nucleic Acids Research, 34(Web Server) pp. W374​-W378​.​ DOI: https://doi.org/10.1093/nar/gkl195 
    ​Details  DOI 
  • 2006 | Journal Article
    ​ ​HHrep: de novo protein repeat detection and the origin of TIM barrels​
    Söding, J. ; Remmert, M. & Biegert, A.​ (2006) 
    Nucleic Acids Research, 34(Web Server) pp. W137​-W142​.​ DOI: https://doi.org/10.1093/nar/gkl130 
    ​Details  DOI 
  • 2006 | Journal Article
    ​ ​Expression, crystallization and preliminary X-ray crystallographic studies of the outer membrane protein OmpW from Escherichia coli​
    Albrecht, R.; Zeth, K.; Söding, J. ; Lupas, A. & Linke, D.​ (2006) 
    Acta Crystallographica. Section F, Structural Biology Communications, 62(4) pp. 415​-418​.​ DOI: https://doi.org/10.1107/S1744309106010190 
    ​Details  DOI 
  • 2006 | Journal Article
    ​ ​The MPI Bioinformatics Toolkit for protein sequence analysis​
    Biegert, A.; Mayer, C.; Remmert, M.; Söding, J.   & Lupas, A. N.​ (2006) 
    Nucleic Acids Research, 34(Web Server) pp. W335​-W339​.​ DOI: https://doi.org/10.1093/nar/gkl217 
    ​Details  DOI 
  • 2005 | Journal Article
    ​ ​Retroactive, a membrane-anchored extracellular protein related to vertebrate snake neurotoxin-like proteins, is required for cuticle organization in the larva ofDrosophila melanogaster​
    Moussian, B.; Söding, J. ; Schwarz, H. & Nüsslein-Volhard, C.​ (2005) 
    Developmental Dynamics, 233(3) pp. 1056​-1063​.​ DOI: https://doi.org/10.1002/dvdy.20389 
    ​Details  DOI 
  • 2005 | Journal Article
    ​ ​AbrB-like Transcription Factors Assume a Swapped Hairpin Fold that Is Evolutionarily Related to Double-Psi β Barrels​
    Coles, M.; Djuranovic, S.; Söding, J. ; Frickey, T.; Koretke, K.; Truffault, V. & Martin, J. et al.​ (2005) 
    Structure, 13(6) pp. 919​-928​.​ DOI: https://doi.org/10.1016/j.str.2005.03.017 
    ​Details  DOI 
  • 2005 | Journal Article
    ​ ​REPPER--repeats and their periodicities in fibrous proteins​
    Gruber, M.; Söding, J.   & Lupas, A. N.​ (2005) 
    Nucleic Acids Research, 33(Web Server) pp. W239​-W243​.​ DOI: https://doi.org/10.1093/nar/gki405 
    ​Details  DOI 
  • 2005 | Journal Article
    ​ ​The HHpred interactive server for protein homology detection and structure prediction​
    Söding, J. ; Biegert, A. & Lupas, A. N.​ (2005) 
    Nucleic Acids Research, 33(Web Server) pp. W244​-W248​.​ DOI: https://doi.org/10.1093/nar/gki408 
    ​Details  DOI 
  • 2004 | Journal Article
    ​ ​Protein homology detection by HMM-HMM comparison​
    Söding, J. ​ (2004) 
    Bioinformatics, 21(7) pp. 951​-960​.​ DOI: https://doi.org/10.1093/bioinformatics/bti125 
    ​Details  DOI 
  • 2003 | Journal Article
    ​ ​More than the sum of their parts: On the evolution of proteins from peptides​
    Söding, J.   & Lupas, A. N.​ (2003) 
    BioEssays, 25(9) pp. 837​-846​.​ DOI: https://doi.org/10.1002/bies.10321 
    ​Details  DOI 
  • 1997 | Journal Article
    ​ ​Short-Distance Atomic Beam Deceleration with a Stimulated Light Force​
    Söding, J. ; Grimm, R.; Ovchinnikov, Y. B.; Bouyer, P. & Salomon, C.​ (1997) 
    Physical Review Letters, 78(8) pp. 1420​-1423​.​ DOI: https://doi.org/10.1103/PhysRevLett.78.1420 
    ​Details  DOI 
  • 1995 | Journal Article
    ​ ​Gravitational laser trap for atoms with evanescent-wave cooling​
    Söding, J. ; Grimm, R. & Ovchinnikov, Y. B.​ (1995) 
    Optics Communications, 119(5-6) pp. 652​-662​.​ DOI: https://doi.org/10.1016/0030-4018(95)00391-K 
    ​Details  DOI 
  • 1994 | Journal Article
    ​ ​Stimulated magneto-optical force in the dressed-atom picture​
    Söding, J.   & Grimm, R.​ (1994) 
    Physical Review. A, 50(3) pp. 2517​-2527​.​ DOI: https://doi.org/10.1103/PhysRevA.50.2517 
    ​Details  DOI 
  • 1994 | Journal Article
    ​ ​Coherent beam splitter for atoms based on a bichromatic standing light wave​
    Grimm, R.; Ovchinnikov, Y. B. & Söding, J. ​ (1994) 
    Optics Letters, 19(9) pp. 658​.​ DOI: https://doi.org/10.1364/OL.19.000658 
    ​Details  DOI 
  • 1993 | Journal Article
    ​ ​Sub-Doppler manifestation of the magneto-optical radiation force​
    Grimm, R.; Söding, J. ; Ovchinnikov, Y. B. & Sidorov, A. I.​ (1993) 
    Optics Communications, 98(1-3) pp. 54​-60​.​ DOI: https://doi.org/10.1016/0030-4018(93)90757-V 
    ​Details  DOI 

Publication List

All Articles (Book & Journal) Conference objects Articles & Preprints Papers (Journal & Conference)

Type

Subtype

Date issued

Author

Project

Peer-Reviewed

Language

Fulltext

Options

Citation Style

GRO View APA Chicago MLA Vancouver
https://publications.goettingen-research-online.de URI: /cris/rp/rp114931
ID: 0000000
PREF: default TOKEN:

0

Sort

Issue Date
ASC DESC
Title
ASC DESC

Embed

JavaScript
Link

Export

Activate Export Mode
Deactivate Export Mode

Select some or all items (max. 800 for CSV/Excel) from the publications list, then choose an export format below.