Dr. Martin Kollmar

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  • 2022 | Journal Article | 
    ​ ​Simm, Dominic, Blagovesta Popova, Gerhard H. Braus, Stephan Waack, and Martin Kollmar. "Design of typical genes for heterologous gene expression​." ​Scientific Reports ​12, no. 1 (2022): . ​https://doi.org/10.1038/s41598-022-13089-1.
    ​Details  DOI 
  • 2019 | Preprint
    ​ ​Simm, Dominic, Klas Hatje, Stephan Waack, and Martin Kollmar​. "Protein function prediction in genomes: Critical assessment of coiled-coil predictions based on protein structure data​." ​Preprint, submitted ​​2019. https://doi.org/10.1101/675025.
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Mühlhausen, Stefanie, Hans Dieter Schmitt, Kuan-Ting Pan, Uwe Plessmann, Henning Urlaub, Laurence D Hurst, and Martin Kollmar. "Endogenous Stochastic Decoding of the CUG Codon by Competing Ser- and Leu-tRNAs in Ascoidea asiatica​." ​Current biology : CB ​28, no. 13 (2018): ​2046-2057.e5​-2057.e5​. ​https://doi.org/10.1016/j.cub.2018.04.085.
    ​Details  DOI  PMID  PMC 
  • 2018 | Journal Article | 
    ​ ​Simm, Dominic, and Martin Kollmar. "Waggawagga-CLI: A command-line tool for predicting stable single α-helices (SAH-domains), and the SAH-domain distribution across eukaryotes​." ​PLOS ONE ​13, no. 2 (2018): ​e0191924​. ​https://doi.org/10.1371/journal.pone.0191924.
    ​Details  DOI  PMID  PMC 
  • 2017 | Journal Article
    ​ ​Kollmar, Martin, and Stefanie Mühlhausen. "Nuclear codon reassignments in the genomics era and mechanisms behind their evolution​." ​BioEssays : news and reviews in molecular, cellular and developmental biology ​39, no. 5 (2017): ​1600221​. ​https://doi.org/10.1002/bies.201600221.
    ​Details  DOI  PMID  PMC 
  • 2017 | Journal Article
    ​ ​Kollmar, Martin, and Stefanie Mühlhausen. "How tRNAs dictate nuclear codon reassignments: Only a few can capture non-cognate codons​." ​RNA biology ​14, no. 3 (2017): ​293-299​-299​. ​https://doi.org/10.1080/15476286.2017.1279785.
    ​Details  DOI  PMID  PMC 
  • 2017 | Journal Article | 
    ​ ​Kollmar, Martin, and Stefanie Mühlhausen. "Myosin repertoire expansion coincides with eukaryotic diversification in the Mesoproterozoic era​." ​BMC evolutionary biology ​17, no. 1 (2017): ​211​. ​https://doi.org/10.1186/s12862-017-1056-2.
    ​Details  DOI  PMID  PMC 
  • 2017 | Journal Article
    ​ ​Hatje, Klas, Raza-Ur Rahman, Ramon O. Vidal, Dominic Simm, Björn Hammesfahr, Vikas Bansal, Ashish Rajput et al. "The landscape of human mutually exclusive splicing​." ​Molecular systems biology ​13, no. 12 (2017): ​959​. ​https://doi.org/10.15252/msb.20177728.
    ​Details  DOI  PMID  PMC 
  • 2016 | Journal Article
    ​ ​Mühlhausen, Stefanie, Peggy Findeisen, Uwe Plessmann, Henning Urlaub, and Martin Kollmar. "A novel nuclear genetic code alteration in yeasts and the evolution of codon reassignment in eukaryotes​." ​Genome research ​26, no. 7 (2016): ​945-55​-955​. ​https://doi.org/10.1101/gr.200931.115.
    ​Details  DOI  PMID  PMC 
  • 2015 | Journal Article
    ​ ​Mühlhausen, Stefanie, Marcel Hellkamp, and Martin Kollmar. "GenePainter v. 2.0 resolves the taxonomic distribution of intron positions​." ​Bioinformatics (Oxford, England) ​31, no. 8 (2015): ​1302-4​-1304​. ​https://doi.org/10.1093/bioinformatics/btu798.
    ​Details  DOI  PMID  PMC 
  • 2014 | Journal Article
    ​ ​Findeisen, Peggy, Stefanie Mühlhausen, Silke Dempewolf, Jonny Hertzog, Alexander Zietlow, Teresa Carlomagno, and Martin Kollmar. "Six subgroups and extensive recent duplications characterize the evolution of the eukaryotic tubulin protein family​." ​Genome biology and evolution ​6, no. 9 (2014): ​2274-88​-2288​. ​https://doi.org/10.1093/gbe/evu187.
    ​Details  DOI  PMID  PMC 
  • 2014 | Journal Article
    ​ ​Mühlhausen, Stefanie, and Martin Kollmar. "Predicting the fungal CUG codon translation with Bagheera​." ​BMC genomics ​15, no. 1 (2014): ​411​. ​https://doi.org/10.1186/1471-2164-15-411.
    ​Details  DOI  PMID  PMC 
  • 2014 | Journal Article
    ​ ​Mühlhausen, Stefanie, and Martin Kollmar. "Molecular phylogeny of sequenced Saccharomycetes reveals polyphyly of the alternative yeast codon usage​." ​Genome biology and evolution ​6, no. 12 (2014): ​3222-37​-3237​. ​https://doi.org/10.1093/gbe/evu152.
    ​Details  DOI  PMID  PMC 
  • 2013 | Journal Article
    ​ ​Mühlhausen, Stefanie, and Martin Kollmar. "Whole genome duplication events in plant evolution reconstructed and predicted using myosin motor proteins​." ​BMC evolutionary biology ​13, no. 1 (2013): ​202​. ​https://doi.org/10.1186/1471-2148-13-202.
    ​Details  DOI  PMID  PMC 
  • 2013 | Conference Proceedings
    ​ ​Beißbarth, Tim, Martin Kollmar, Andreas Leha, Burkhard Morgenstern, Anne-Kathrin Schultz, Stephan Waack, and Edgar Wingender​, eds. German Conference on Bioinformatics 2013​. ​​2013. 
    ​Details 
  • 2013 | Journal Article | Research Paper
    ​ ​Mazur, Adam, Björn Hammesfahr, Christian Griesinger, Donghan Lee, and Martin Kollmar. "ShereKhan-calculating exchange parameters in relaxation dispersion data from CPMG experiments​." ​Bioinformatics ​29, no. 14 (2013): ​1819​-1820​. ​https://doi.org/10.1093/bioinformatics/btt286.
    ​Details  DOI  PMID  PMC  WoS 

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