Prof. Dr. Burkhard Morgenstern

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  • 2019 | Journal Article | 
    ​ ​Benchmarking of alignment-free sequence comparison methods​
    Zielezinski, A.; Girgis, H. Z.; Bernard, G.; Leimeister, C.-A.; Tang, K.; Dencker, T. & Lau, A. K. et al.​ (2019) 
    Genome Biology, 20(1).​ DOI: https://doi.org/10.1186/s13059-019-1755-7 
    ​Details  DOI 
  • 2019 | Journal Article | 
    ​ ​Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage​
    Lau, A.-K.; Dörrer, S.; Leimeister, C.-A.; Bleidorn, C.   & Morgenstern, B. ​ (2019) 
    BMC Bioinformatics, 20(Suppl 20) art. 638​.​ DOI: https://doi.org/10.1186/s12859-019-3205-7 
    ​Details  DOI  PMID  PMC 
  • 2018 | Journal Article
    ​ ​Accurate multiple alignment of distantly related genome sequences using filtered spaced word matches as anchor points​
    Leimeister, C.-A.; Dencker, T. & Morgenstern, B. ​ (2018) 
    Bioinformatics, 35(2) pp. 211​-218​.​ DOI: https://doi.org/10.1093/bioinformatics/bty592 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Prot-SpaM: fast alignment-free phylogeny reconstruction based on whole-proteome sequences​
    Leimeister, C.-A.; Schellhorn, J. ; Dörrer, S.; Gerth, M.; Bleidorn, C.   & Morgenstern, B. ​ (2018) 
    GigaScience, 8(3).​ DOI: https://doi.org/10.1093/gigascience/giy148 
    ​Details  DOI 
  • 2017 | Journal Article | 
    ​ ​Phylogeny reconstruction based on the length distribution of k-mismatch common substrings​
    Morgenstern, B. ; Schöbel, S. & Leimeister, C.-A.​ (2017) 
    Algorithms for Molecular Biology, 12(1) art. 27​.​ DOI: https://doi.org/10.1186/s13015-017-0118-8 
    ​Details  DOI 
  • 2017 | Journal Article | 
    ​ ​Fast and accurate phylogeny reconstruction using filtered spaced-word matches​
    Leimeister, C.-A.; Sohrabi-Jahromi, S. & Morgenstern, B. ​ (2017) 
    Bioinformatics, 33(7) pp. 971​-979​.​ DOI: https://doi.org/10.1093/bioinformatics/btw776 
    ​Details  DOI  PMID  PMC  WoS 
  • 2016 | Journal Article | 
    ​ ​rasbhari: Optimizing Spaced Seeds for Database Searching, Read Mapping and Alignment-Free Sequence Comparison​
    Hahn, L.; Leimeister, C.-A.; Ounit, R.; Lonardi, S. & Morgenstern, B. ​ (2016) 
    PLoS Computational Biology, 12(10) art. e1005107​.​ DOI: https://doi.org/10.1371/journal.pcbi.1005107 
    ​Details  DOI  PMID  PMC  WoS 
  • 2015 | Journal Article | 
    ​ ​MarVis-Pathway: integrative and exploratory pathway analysis of non-targeted metabolomics data​
    Kaever, A.; Landesfeind, M.; Feussner, K.; Mosblech, A.; Heilmann, I.; Morgenstern, B.   & Feussner, I. et al.​ (2015) 
    Metabolomics, 11(3) pp. 764​-777​.​ DOI: https://doi.org/10.1007/s11306-014-0734-y 
    ​Details  DOI  WoS 
  • 2015 | Journal Article | Research Paper | 
    ​ ​The iBeetle large-scale RNAi screen reveals gene functions for insect development and physiology​
    Schmitt-Engel, C.; Schultheis, D.; Schwirz, J.; Stroehlein, N.; Troelenberg, N.; Majumdar, U. & Dao, V. A. et al.​ (2015) 
    Nature Communications, 6 art. 7822​.​ DOI: https://doi.org/10.1038/ncomms8822 
    ​Details  DOI  PMID  PMC  WoS 
  • 2015 | Journal Article | 
    ​ ​Estimating evolutionary distances between genomic sequences from spaced-word matches​
    Morgenstern, B. ; Zhu, B.; Horwege, S. & Leimeister, C. A.​ (2015) 
    Algorithms for Molecular Biology, 10 art. x​.​ DOI: https://doi.org/10.1186/s13015-015-0032-x 
    ​Details  DOI  PMID  PMC  WoS 
  • 2014 | Journal Article
    ​ ​kmacs: the k-mismatch average common substring approach to alignment-free sequence comparison​
    Leimeister, C.-A. & Morgenstern, B. ​ (2014) 
    Bioinformatics, 30(14) pp. 2000​-2008​.​ DOI: https://doi.org/10.1093/bioinformatics/btu331 
    ​Details  DOI  PMID  PMC  WoS 
  • 2014 | Journal Article | 
    ​ ​Spaced words and kmacs: fast alignment-free sequence comparison based on inexact word matches​
    Horwege, S.; Lindner, S.; Boden, M.; Hatje, K.; Kollmar, M.; Leimeister, C.-A. & Morgenstern, B. ​ (2014) 
    Nucleic Acids Research, 42(W1) pp. W7​-W11​.​ DOI: https://doi.org/10.1093/nar/gku398 
    ​Details  DOI  PMID  PMC  WoS 
  • 2014 | Journal Article | 
    ​ ​Meta-Analysis of Pathway Enrichment: Combining Independent and Dependent Omics Data Sets​
    Kaever, A.; Landesfeind, M.; Feussner, K.; Morgenstern, B. ; Feussner, I. & Meinicke, P. ​ (2014) 
    PLoS ONE, 9(2) art. e89297​.​ DOI: https://doi.org/10.1371/journal.pone.0089297 
    ​Details  DOI  PMID  PMC  WoS 
  • 2014 | Journal Article | 
    ​ ​Fast alignment-free sequence comparison using spaced-word frequencies​
    Leimeister, C.-A.; Boden, M.; Horwege, S.; Lindner, S. & Morgenstern, B. ​ (2014) 
    Bioinformatics, 30(14) pp. 1991​-1999​.​ DOI: https://doi.org/10.1093/bioinformatics/btu177 
    ​Details  DOI  PMID  PMC  WoS 
  • 2013 | Journal Article | 
    ​ ​DIALIGN at GOBICS-multiple sequence alignment using various sources of external information​
    Al Ait, L.; Yamak, Z. & Morgenstern, B. ​ (2013) 
    Nucleic Acids Research, 41(W1) pp. W3​-W7​.​ DOI: https://doi.org/10.1093/nar/gkt283 
    ​Details  DOI  PMID  PMC  WoS 
  • 2012 | Journal Article | 
    ​ ​jpHMM: recombination analysis in viruses with circular genomes such as the hepatitis B virus​
    Schultz, A.-K.; Bulla, I.; Abdou-Chekaraou, M.; Gordien, E.; Morgenstern, B. ; Zoulim, F. & Deny, P. et al.​ (2012) 
    Nucleic Acids Research, 40(W1) pp. W193​-W198​.​ DOI: https://doi.org/10.1093/nar/gks414 
    ​Details  DOI  PMID  PMC  WoS 
  • 2011 | Journal Article
    ​ ​5 ' TRU: Identification and Analysis of Translationally Regulative 5 ' Untranslated Regions in Amino Acid Starved Yeast Cells​
    Rachfall, N.; Heinemeyer, I.; Morgenstern, B. ; Valerius, O. & Braus, G. H.​ (2011) 
    Molecular & Cellular Proteomics, 10(6).​ DOI: https://doi.org/10.1074/mcp.M110.003350 
    ​Details  DOI  WoS 
  • 2011 | Journal Article
    ​ ​Identification of Novel Plant Peroxisomal Targeting Signals by a Combination of Machine Learning Methods and in Vivo Subcellular Targeting Analyses​
    Lingner, T.; Kataya, A. R.; Antonicelli, G. E.; Benichou, A.; Nilssen, K.; Chen, X.-Y. & Siemsen, T. et al.​ (2011) 
    The Plant Cell, 23(4) pp. 1556​-1572​.​ DOI: https://doi.org/10.1105/tpc.111.084095 
    ​Details  DOI  PMID  PMC  WoS 
  • 2011 | Journal Article | 
    ​ ​MolabIS - An integrated information system for storing and managing molecular genetics data​
    Truong, C. V. C.; Groeneveld, L. F.; Morgenstern, B.   & Groeneveld, E.​ (2011) 
    BMC Bioinformatics, 12 art. 425​.​ DOI: https://doi.org/10.1186/1471-2105-12-425 
    ​Details  DOI  PMID  PMC  WoS 
  • 2011 | Journal Article | 
    ​ ​Detection of viral sequence fragments of HIV-1 subfamilies yet unknown​
    Unterthiner, T.; Schultz, A.-K.; Bulla, J.; Morgenstern, B. ; Stanke, M. & Bulla, I.​ (2011) 
    BMC Bioinformatics, 12 art. 93​.​ DOI: https://doi.org/10.1186/1471-2105-12-93 
    ​Details  DOI  PMID  PMC  WoS 
  • 2010 | Journal Article | 
    ​ ​The role of recombination in the emergence of a complex and dynamic HIV epidemic​
    Zhang, M.; Foley, B.; Schultz, A.-K.; Macke, J. P.; Bulla, I.; Stanke, M. & Morgenstern, B.  et al.​ (2010) 
    Retrovirology, 7(25)-15​.​ DOI: https://doi.org/10.1186/1742-4690-7-25 
    ​Details  DOI 
  • 2010 | Journal Article
    ​ ​HIV classification using the coalescent theory​
    Bulla, I.; Schultz, A.-K.; Schreiber, F.; Zhang, M.; Leitner, T.; Korber, B. & Morgenstern, B.  et al.​ (2010) 
    Bioinformatics, 26(11) pp. 1409​-1415​.​ DOI: https://doi.org/10.1093/bioinformatics/btq159 
    ​Details  DOI  PMID  PMC  WoS 
  • 2010 | Journal Article
    ​ ​A min-cut algorithm for the consistency problem in multiple sequence alignment​
    Corel, E.; Pitschi, F. & Morgenstern, B. ​ (2010) 
    Bioinformatics, 26(8) pp. 1015​-1021​.​ DOI: https://doi.org/10.1093/bioinformatics/btq082 
    ​Details  DOI  PMID  PMC  WoS 
  • 2010 | Journal Article | 
    ​ ​DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS​
    Subramanian, A. R.; Hiran, S.; Steinkamp, R.; Meinicke, P. ; Corel, E. & Morgenstern, B. ​ (2010) 
    Nucleic Acids Research, 38 pp. W19​-W22​.​ DOI: https://doi.org/10.1093/nar/gkq442 
    ​Details  DOI  PMID  PMC  WoS 
  • 2010 | Journal Article
    ​ ​Improved Phylogenomic Taxon Sampling Noticeably Affects Nonbilaterian Relationships​
    Pick, K.; Philippe, H.; Schreiber, F.; Erpenbeck, D.; Jackson, D. J. ; Wrede, P. & Wiens, M. et al.​ (2010) 
    Molecular Biology and Evolution, 27(9) pp. 1983​-1987​.​ DOI: https://doi.org/10.1093/molbev/msq089 
    ​Details  DOI  PMID  PMC  WoS 

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