Prof. Dr. Burkhard Morgenstern

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  • 2011 | Journal Article
    ​ ​5 ' TRU: Identification and Analysis of Translationally Regulative 5 ' Untranslated Regions in Amino Acid Starved Yeast Cells​
    Rachfall, N.; Heinemeyer, I.; Morgenstern, B. ; Valerius, O. & Braus, G. H.​ (2011) 
    Molecular & Cellular Proteomics, 10(6).​ DOI: https://doi.org/10.1074/mcp.M110.003350 
    ​Details  DOI  WoS 
  • 2010 | Journal Article
    ​ ​A min-cut algorithm for the consistency problem in multiple sequence alignment​
    Corel, E.; Pitschi, F. & Morgenstern, B. ​ (2010) 
    Bioinformatics, 26(8) pp. 1015​-1021​.​ DOI: https://doi.org/10.1093/bioinformatics/btq082 
    ​Details  DOI  PMID  PMC  WoS 
  • 2002 | Journal Article
    ​ ​A simple and space-efficient fragment-chaining algorithm for alignment of DNA and protein sequences​
    Morgenstern, B. ​ (2002) 
    Applied Mathematics Letters, 15(1) pp. 11​-16​.​ DOI: https://doi.org/10.1016/S0893-9659(01)00085-4 
    ​Details  DOI 
  • 2000 | Journal Article
    ​ ​A space-efficient algorithm for aligning large genomic sequences​
    Morgenstern, B. ​ (2000) 
    Bioinformatics, 16(10) pp. 948​-949​.​ DOI: https://doi.org/10.1093/bioinformatics/16.10.948 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Accurate multiple alignment of distantly related genome sequences using filtered spaced word matches as anchor points​
    Leimeister, C.-A.; Dencker, T. & Morgenstern, B. ​ (2018) 
    Bioinformatics, 35(2) pp. 211​-218​.​ DOI: https://doi.org/10.1093/bioinformatics/bty592 
    ​Details  DOI 
  • 2003 | Journal Article
    ​ ​AGenDA: homology-based gene prediction​
    Taher, L.; Rinner, O.; Garg, S.; Sczyrba, A.; Brudno, M.; Batzoglou, S. & Morgenstern, B. ​ (2003) 
    Bioinformatics, 19(12) pp. 1575​-1577​.​ DOI: https://doi.org/10.1093/bioinformatics/btg181 
    ​Details  DOI  PMID  PMC  WoS 
  • 2003 | Journal Article
    ​ ​AltAVisT: Comparing alternative multiple sequence alignments​
    Morgenstern, B. ; Goel, S.; Sczyrba, A. & Dress, A.​ (2003) 
    Bioinformatics, 19(3) pp. 425​-426​.​ DOI: https://doi.org/10.1093/bioinformatics/btf882 
    ​Details  DOI 
  • 1999 | Journal Article
    ​ ​An exact solution for the segment-to-segment multiple sequence alignment problem​
    Lenhof, H.; Morgenstern, B.   & Reinert, K.​ (1999) 
    Bioinformatics, 15(3) pp. 203​-210​.​ DOI: https://doi.org/10.1093/bioinformatics/15.3.203 
    ​Details  DOI 
  • 2009 | Journal Article | Research Paper
    ​ ​AUGUSTUS at MediGRID: Adaption of a bioinformatics application to grid computing for efficient genome analysis​
    Sommerfeld, D.; Lingner, T.; Stanke, M.; Morgenstern, B.   & Richter, H.​ (2009) 
    Future Generation Computer Systems, 25(3) pp. 337​-345​.​ DOI: https://doi.org/10.1016/j.future.2008.05.010 
    ​Details  DOI  WoS 
  • 1999 | Journal Article
    ​ ​DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment​
    Morgenstern, B. ​ (1999) 
    Bioinformatics, 15(3) pp. 211​-218​.​ DOI: https://doi.org/10.1093/bioinformatics/15.3.211 
    ​Details  DOI 
  • 1998 | Journal Article
    ​ ​DIALIGN: finding local similarities by multiple sequence alignment​
    Morgenstern, B. ; Frech, K.; Dress, A. & Werner, T.​ (1998) 
    Bioinformatics, 14(3) pp. 290​-294​.​ DOI: https://doi.org/10.1093/bioinformatics/14.3.290 
    ​Details  DOI 
  • 2003 | Journal Article
    ​ ​Divide-and-conquer multiple alignment with segment-based constraints​
    Sammeth, M.; Morgenstern, B.   & Stoye, J.​ (2003) 
    Bioinformatics, 19 pp. II189​-II195​.​ DOI: https://doi.org/10.1093/bioinformatics/btg1077 
    ​Details  DOI  PMID  PMC  WoS 
  • 1999 | Journal Article
    ​ ​Evolution of bHLH transcription factors: modular evolution by domain shuffling?​
    Morgenstern, B.   & Atchley, W. R.​ (1999) 
    Molecular Biology and Evolution, 16(12) pp. 1654​-1663​.​ DOI: https://doi.org/10.1093/oxfordjournals.molbev.a026079 
    ​Details  DOI 
  • 2002 | Journal Article
    ​ ​Exon discovery by genomic sequence alignment​
    Morgenstern, B. ; Rinner, O.; Abdeddaim, S.; Haase, D.; Mayer, K. F. X.; Dress, A. W. M. & Mewes, H.-W.​ (2002) 
    Bioinformatics, 18(6) pp. 777​-787​.​ DOI: https://doi.org/10.1093/bioinformatics/18.6.777 
    ​Details  DOI 
  • 2021 | Journal Article
    ​ ​Genome and Methylome analysis of a phylogenetic novel Campylobacter coli cluster with C. jejuni introgression​
    Dieckmann, A.-L.; Riedel, T.; Bunk, B.; Spröer, C.; Overmann, J.; Groß, U. & Bader, O. et al.​ (2021) 
    Microbial Genomics, 7(10).​ DOI: https://doi.org/10.1099/mgen.0.000679 
    ​Details  DOI 
  • 2013 | Conference Proceedings
    ​ ​German Conference on Bioinformatics 2013​
    Beißbarth, T. ; Kollmar, M. ; Leha, A. ; Morgenstern, B. ; Schultz, A.-K.; Waack, S.  & Wingender, E. ​ (Eds.) (2013)
    German Conference on Bioinformatics 2013​, Göttingen.
    ​Details 
  • 2010 | Journal Article
    ​ ​HIV classification using the coalescent theory​
    Bulla, I.; Schultz, A.-K.; Schreiber, F.; Zhang, M.; Leitner, T.; Korber, B. & Morgenstern, B.  et al.​ (2010) 
    Bioinformatics, 26(11) pp. 1409​-1415​.​ DOI: https://doi.org/10.1093/bioinformatics/btq159 
    ​Details  DOI  PMID  PMC  WoS 
  • 2009 | Conference Abstract
    ​ ​Identification of metabolic changes after wounding in Arabidopsis thaliana by an unbiased UPLC-MS approach​
    Goebel, C.; Feussner, K.; Kaever, A.; Meinicke, P. ; Morgenstern, B.   & Feussner, I.​ (2009)
    Chemistry and Physics of Lipids, 160 ​50th International Conference on Bioscience of Lipids​, Regenburg, GERMANY.
    Clare​: Elsevier Ireland Ltd. DOI: https://doi.org/10.1016/j.chemphyslip.2009.06.024 
    ​Details  DOI  WoS 
  • 2011 | Journal Article
    ​ ​Identification of Novel Plant Peroxisomal Targeting Signals by a Combination of Machine Learning Methods and in Vivo Subcellular Targeting Analyses​
    Lingner, T.; Kataya, A. R.; Antonicelli, G. E.; Benichou, A.; Nilssen, K.; Chen, X.-Y. & Siemsen, T. et al.​ (2011) 
    The Plant Cell, 23(4) pp. 1556​-1572​.​ DOI: https://doi.org/10.1105/tpc.111.084095 
    ​Details  DOI  PMID  PMC  WoS 
  • 2010 | Journal Article
    ​ ​Improved Phylogenomic Taxon Sampling Noticeably Affects Nonbilaterian Relationships​
    Pick, K.; Philippe, H.; Schreiber, F.; Erpenbeck, D.; Jackson, D. J. ; Wrede, P. & Wiens, M. et al.​ (2010) 
    Molecular Biology and Evolution, 27(9) pp. 1983​-1987​.​ DOI: https://doi.org/10.1093/molbev/msq089 
    ​Details  DOI  PMID  PMC  WoS 
  • 2010 | Journal Article
    ​ ​jpHMM: improving the reliability of recombination prediction in HIV-1​
    Schultz, A.-K.; Zhang, M.; Bulla, I.; Leitner, T.; Korber, B.; Morgenstern, B.   & Stanke, M.​ (2010) 
    Nucleic Acids Research, 38(3) pp. 1059​-1059​.​ DOI: https://doi.org/10.1093/nar/gkq015 
    ​Details  DOI 
  • 2009 | Journal Article
    ​ ​jpHMM: Improving the reliability of recombination prediction in HIV-1​
    Schultz, A.-K.; Zhang, M.; Bulla, I.; Leitner, T.; Korber, B.; Morgenstern, B.   & Stanke, M.​ (2009) 
    Nucleic Acids Research, 37 pp. W647​-W651​.​ DOI: https://doi.org/10.1093/nar/gkp371 
    ​Details  DOI  PMID  PMC  WoS 
  • 2014 | Journal Article
    ​ ​kmacs: the k-mismatch average common substring approach to alignment-free sequence comparison​
    Leimeister, C.-A. & Morgenstern, B. ​ (2014) 
    Bioinformatics, 30(14) pp. 2000​-2008​.​ DOI: https://doi.org/10.1093/bioinformatics/btu331 
    ​Details  DOI  PMID  PMC  WoS 
  • 1996 | Journal Article
    ​ ​Multiple DNA and protein sequence alignment based on segment-to-segment comparison.​
    Morgenstern, B. ; Dress, A. & Werner, T.​ (1996) 
    Proceedings of the National Academy of Sciences, 93(22) pp. 12098​-12103​.​ DOI: https://doi.org/10.1073/pnas.93.22.12098 
    ​Details  DOI 
  • 2005 | Journal Article
    ​ ​Multiple sequence alignment with user-defined constraints at GOBICS​
    Morgenstern, B. ; Werner, N.; Prohaska, S. J.; Steinkamp, R.; Schneider, I.; Subramanian, A. R. & Stadler, P. F. et al.​ (2005) 
    Bioinformatics, 21(7) pp. 1271​-1273​.​ DOI: https://doi.org/10.1093/bioinformatics/bti142 
    ​Details  DOI  PMID  PMC  WoS 
  • 2009 | Journal Article
    ​ ​OrthoSelect: a web server for selecting orthologous gene alignments from EST sequences​
    Schreiber, F.; Woerheide, G. & Morgenstern, B. ​ (2009) 
    Nucleic Acids Research, 37 pp. W185​-W188​.​ DOI: https://doi.org/10.1093/nar/gkp434 
    ​Details  DOI  PMID  PMC  WoS 
  • 2009 | Journal Article
    ​ ​Phylogenomics Revives Traditional Views on Deep Animal Relationships​
    Philippe, H.; Derelle, R.; Lopez, P.; Pick, K.; Borchiellini, C.; Boury-Esnault, N. & Vacelet, J. et al.​ (2009) 
    Current Biology, 19(8) pp. 706​-712​.​ DOI: https://doi.org/10.1016/j.cub.2009.02.052 
    ​Details  DOI  PMID  PMC  WoS 
  • 2018 | Journal Article
    ​ ​Prot-SpaM: fast alignment-free phylogeny reconstruction based on whole-proteome sequences​
    Leimeister, C.-A.; Schellhorn, J. ; Dörrer, S.; Gerth, M.; Bleidorn, C.   & Morgenstern, B. ​ (2018) 
    GigaScience, 8(3).​ DOI: https://doi.org/10.1093/gigascience/giy148 
    ​Details  DOI 
  • 2009 | Journal Article
    ​ ​Rhizobium sp Strain NGR234 Possesses a Remarkable Number of Secretion Systems​
    Schmeisser, C.; Liesegang, H. ; Krysciak, D.; Bakkou, N.; Le Quere, A.; Wollherr, A. & Heinemeyer, I. et al.​ (2009) 
    Applied and Environmental Microbiology, 75(12) pp. 4035​-4045​.​ DOI: https://doi.org/10.1128/AEM.00515-09 
    ​Details  DOI  PMID  PMC  WoS 
  • 2020 | Journal Article
    ​ ​Smash++: an alignment-free and memory-efficient tool to find genomic rearrangements​
    Hosseini, M.; Pratas, D.; Morgenstern, B.   & Pinho, A. J​ (2020) 
    GigaScience, 9(5).​ DOI: https://doi.org/10.1093/gigascience/giaa048 
    ​Details  DOI 
  • 2004 | Conference Abstract
    ​ ​The DIALIGN multiple alignment program: Recent developments and applications​
    Morgenstern, B. ​ (2004)
    CLADISTICS-THE INTERNATIONAL JOURNAL OF THE WILLI HENNIG SOCIETY, 20(1) pp. 89​-90. ​22nd Annual Meeting of the Willi-Hennig-Society​, New York Botan Garden, Bronx, NY.
    London​: Academic Press Ltd Elsevier Science Ltd.
    ​Details  WoS 
  • 2001 | Journal Article
    ​ ​The HIB database of annotated UniGene clusters​
    Geier, B.; Kastenmuller, G.; Fellenberg, M.; Mewes, H.-W. & Morgenstern, B. ​ (2001) 
    Bioinformatics, 17(6) pp. 571​-572​.​ DOI: https://doi.org/10.1093/bioinformatics/17.6.571 
    ​Details  DOI 
  • 1998 | Journal Article
    ​ ​The number of standard and of effective multiple alignments​
    Dress, A.; Morgenstern, B.   & Stoye, J.​ (1998) 
    Applied Mathematics Letters, 11(4) pp. 43​-49​.​ DOI: https://doi.org/10.1016/S0893-9659(98)00054-8 
    ​Details  DOI 
  • 2005 | Journal Article
    ​ ​TICO: a tool for improving predictions of prokaryotic translation initiation sites​
    Tech, M. ; Pfeifer, N.; Morgenstern, B.   & Meinicke, P. ​ (2005) 
    Bioinformatics, 21(17) pp. 3568​-3569​.​ DOI: https://doi.org/10.1093/bioinformatics/bti563 
    ​Details  DOI  PMID  PMC  WoS 
  • 2020 | Preprint
    ​ ​V. longisporum elicits media-dependent secretome responses with a further capacity to distinguish between plant-related environments​
    Leonard, M.; Kühn, A.; Harting, R.; Maurus, I.; Nagel, A.; Starke, J.& Kusch, H.  et al.​ (2020). DOI: https://doi.org/10.1101/2020.02.11.943803 
    ​Details  DOI 

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