Prof. Dr. Burkhard Morgenstern

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unigoe
 

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  • 2022 | Journal Article | 
    ​ ​Insertions and deletions as phylogenetic signal in an alignment-free context​
    Birth, N.; Dencker, T. & Morgenstern, B. ​ (2022) 
    PLOS Computational Biology, 18(8) pp. e1010303​.​ DOI: https://doi.org/10.1371/journal.pcbi.1010303 
    ​Details  DOI 
  • 2021 | Journal Article
    ​ ​Genome and Methylome analysis of a phylogenetic novel Campylobacter coli cluster with C. jejuni introgression​
    Dieckmann, A.-L.; Riedel, T.; Bunk, B.; Spröer, C.; Overmann, J.; Groß, U. & Bader, O. et al.​ (2021) 
    Microbial Genomics, 7(10).​ DOI: https://doi.org/10.1099/mgen.0.000679 
    ​Details  DOI 
  • 2021 | Journal Article | Research Paper | 
    ​ ​A 20‐kb lineage‐specific genomic region tames virulence in pathogenic amphidiploid Verticillium longisporum​
    Harting, R.; Starke, J.; Kusch, H. ; Pöggeler, S.; Maurus, I.; Schlüter, R. & Landesfeind, M. et al.​ (2021) 
    Molecular Plant Pathology,.​ DOI: https://doi.org/10.1111/mpp.13071 
    ​Details  DOI 
  • 2020 | Preprint
    ​ ​V. longisporum elicits media-dependent secretome responses with a further capacity to distinguish between plant-related environments​
    Leonard, M.; Kühn, A.; Harting, R.; Maurus, I.; Nagel, A.; Starke, J.& Kusch, H.  et al.​ (2020). DOI: https://doi.org/10.1101/2020.02.11.943803 
    ​Details  DOI 
  • 2020 | Journal Article
    ​ ​Smash++: an alignment-free and memory-efficient tool to find genomic rearrangements​
    Hosseini, M.; Pratas, D.; Morgenstern, B.   & Pinho, A. J​ (2020) 
    GigaScience, 9(5).​ DOI: https://doi.org/10.1093/gigascience/giaa048 
    ​Details  DOI 
  • 2020 | Journal Article | 
    ​ ​Verticillium longisporum Elicits Media-Dependent Secretome Responses With Capacity to Distinguish Between Plant-Related Environments​
    Leonard, M.; Kühn, A.; Harting, R.; Maurus, I.; Nagel, A.; Starke, J. & Kusch, H.  et al.​ (2020) 
    Frontiers in Microbiology, 11.​ DOI: https://doi.org/10.3389/fmicb.2020.01876 
    ​Details  DOI 
  • 2020 | Journal Article | 
    ​ ​The number of k-mer matches between two DNA sequences as a function of k and applications to estimate phylogenetic distances​
    Röhling, S.; Linne, A.; Schellhorn, J. ; Hosseini, M.; Dencker, T. & Morgenstern, B. ​ (2020) 
    PLoS One, 15(2) pp. e0228070​.​ DOI: https://doi.org/10.1371/journal.pone.0228070 
    ​Details  DOI 
  • 2019 | Journal Article | 
    ​ ​Benchmarking of alignment-free sequence comparison methods​
    Zielezinski, A.; Girgis, H. Z.; Bernard, G.; Leimeister, C.-A.; Tang, K.; Dencker, T. & Lau, A. K. et al.​ (2019) 
    Genome Biology, 20(1).​ DOI: https://doi.org/10.1186/s13059-019-1755-7 
    ​Details  DOI 
  • 2019 | Journal Article | 
    ​ ​Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage​
    Lau, A.-K.; Dörrer, S.; Leimeister, C.-A.; Bleidorn, C.   & Morgenstern, B. ​ (2019) 
    BMC Bioinformatics, 20(Suppl 20) art. 638​.​ DOI: https://doi.org/10.1186/s12859-019-3205-7 
    ​Details  DOI  PMID  PMC 
  • 2018 | Journal Article
    ​ ​Accurate multiple alignment of distantly related genome sequences using filtered spaced word matches as anchor points​
    Leimeister, C.-A.; Dencker, T. & Morgenstern, B. ​ (2018) 
    Bioinformatics, 35(2) pp. 211​-218​.​ DOI: https://doi.org/10.1093/bioinformatics/bty592 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Prot-SpaM: fast alignment-free phylogeny reconstruction based on whole-proteome sequences​
    Leimeister, C.-A.; Schellhorn, J. ; Dörrer, S.; Gerth, M.; Bleidorn, C.   & Morgenstern, B. ​ (2018) 
    GigaScience, 8(3).​ DOI: https://doi.org/10.1093/gigascience/giy148 
    ​Details  DOI 
  • 2017 | Journal Article | 
    ​ ​Phylogeny reconstruction based on the length distribution of k-mismatch common substrings​
    Morgenstern, B. ; Schöbel, S. & Leimeister, C.-A.​ (2017) 
    Algorithms for Molecular Biology, 12(1) art. 27​.​ DOI: https://doi.org/10.1186/s13015-017-0118-8 
    ​Details  DOI 
  • 2010 | Journal Article
    ​ ​jpHMM: improving the reliability of recombination prediction in HIV-1​
    Schultz, A.-K.; Zhang, M.; Bulla, I.; Leitner, T.; Korber, B.; Morgenstern, B.   & Stanke, M.​ (2010) 
    Nucleic Acids Research, 38(3) pp. 1059​-1059​.​ DOI: https://doi.org/10.1093/nar/gkq015 
    ​Details  DOI 
  • 2010 | Journal Article | 
    ​ ​The role of recombination in the emergence of a complex and dynamic HIV epidemic​
    Zhang, M.; Foley, B.; Schultz, A.-K.; Macke, J. P.; Bulla, I.; Stanke, M. & Morgenstern, B.  et al.​ (2010) 
    Retrovirology, 7(25)-15​.​ DOI: https://doi.org/10.1186/1742-4690-7-25 
    ​Details  DOI 
  • 2008 | Journal Article | 
    ​ ​DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment​
    Subramanian, A. R.; Kaufmann, M. & Morgenstern, B. ​ (2008) 
    Algorithms for molecular biology, 3(6) pp. 1​-11​.​
    ​Details 
  • 2006 | Journal Article | 
    ​ ​AUGUSTUS: ab initio prediction of alternative transcripts​
    Stanke, M.; Keller, O.; Gunduz, I.; Hayes, A.; Waack, S. & Morgenstern, B. ​ (2006) 
    NUCLEIC ACIDS RESEARCH, 34 pp. W435​-W439​.​ DOI: https://doi.org/10.1093/nar/gkl200 
    ​Details  DOI 
  • 2006 | Journal Article | 
    ​ ​jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1​
    Zhang, M.; Schultz, A.-K.; Calef, C.; Kuiken, C.; Leitner, T.; Korber, B. & Morgenstern, B.  et al.​ (2006) 
    NUCLEIC ACIDS RESEARCH, 34 pp. W463​-W465​.​ DOI: https://doi.org/10.1093/nar/gkl255 
    ​Details  DOI 
  • 2003 | Journal Article
    ​ ​AltAVisT: Comparing alternative multiple sequence alignments​
    Morgenstern, B. ; Goel, S.; Sczyrba, A. & Dress, A.​ (2003) 
    Bioinformatics, 19(3) pp. 425​-426​.​ DOI: https://doi.org/10.1093/bioinformatics/btf882 
    ​Details  DOI 
  • 2002 | Journal Article
    ​ ​Exon discovery by genomic sequence alignment​
    Morgenstern, B. ; Rinner, O.; Abdeddaim, S.; Haase, D.; Mayer, K. F. X.; Dress, A. W. M. & Mewes, H.-W.​ (2002) 
    Bioinformatics, 18(6) pp. 777​-787​.​ DOI: https://doi.org/10.1093/bioinformatics/18.6.777 
    ​Details  DOI 
  • 2002 | Journal Article
    ​ ​A simple and space-efficient fragment-chaining algorithm for alignment of DNA and protein sequences​
    Morgenstern, B. ​ (2002) 
    Applied Mathematics Letters, 15(1) pp. 11​-16​.​ DOI: https://doi.org/10.1016/S0893-9659(01)00085-4 
    ​Details  DOI 
  • 2002 | Journal Article | 
    ​ ​MIPS: a database for genomes and protein sequences.​
    Mewes, H. W.; Frishman, D.; Güldener, U.; Mannhaupt, G.; Mayer, K.; Mokrejs, M. & Morgenstern, B.  et al.​ (2002) 
    NUCLEIC ACIDS RESEARCH, 30(1) pp. 31​-34​.​
    ​Details 
  • 2001 | Journal Article
    ​ ​The HIB database of annotated UniGene clusters​
    Geier, B.; Kastenmuller, G.; Fellenberg, M.; Mewes, H.-W. & Morgenstern, B. ​ (2001) 
    Bioinformatics, 17(6) pp. 571​-572​.​ DOI: https://doi.org/10.1093/bioinformatics/17.6.571 
    ​Details  DOI 
  • 2000 | Journal Article
    ​ ​A space-efficient algorithm for aligning large genomic sequences​
    Morgenstern, B. ​ (2000) 
    Bioinformatics, 16(10) pp. 948​-949​.​ DOI: https://doi.org/10.1093/bioinformatics/16.10.948 
    ​Details  DOI 
  • 1999 | Journal Article
    ​ ​An exact solution for the segment-to-segment multiple sequence alignment problem​
    Lenhof, H.; Morgenstern, B.   & Reinert, K.​ (1999) 
    Bioinformatics, 15(3) pp. 203​-210​.​ DOI: https://doi.org/10.1093/bioinformatics/15.3.203 
    ​Details  DOI 
  • 1999 | Journal Article
    ​ ​Evolution of bHLH transcription factors: modular evolution by domain shuffling?​
    Morgenstern, B.   & Atchley, W. R.​ (1999) 
    Molecular Biology and Evolution, 16(12) pp. 1654​-1663​.​ DOI: https://doi.org/10.1093/oxfordjournals.molbev.a026079 
    ​Details  DOI 
  • 1999 | Journal Article
    ​ ​DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment​
    Morgenstern, B. ​ (1999) 
    Bioinformatics, 15(3) pp. 211​-218​.​ DOI: https://doi.org/10.1093/bioinformatics/15.3.211 
    ​Details  DOI 
  • 1998 | Journal Article
    ​ ​The number of standard and of effective multiple alignments​
    Dress, A.; Morgenstern, B.   & Stoye, J.​ (1998) 
    Applied Mathematics Letters, 11(4) pp. 43​-49​.​ DOI: https://doi.org/10.1016/S0893-9659(98)00054-8 
    ​Details  DOI 
  • 1998 | Journal Article
    ​ ​DIALIGN: finding local similarities by multiple sequence alignment​
    Morgenstern, B. ; Frech, K.; Dress, A. & Werner, T.​ (1998) 
    Bioinformatics, 14(3) pp. 290​-294​.​ DOI: https://doi.org/10.1093/bioinformatics/14.3.290 
    ​Details  DOI 
  • 1996 | Journal Article
    ​ ​Multiple DNA and protein sequence alignment based on segment-to-segment comparison.​
    Morgenstern, B. ; Dress, A. & Werner, T.​ (1996) 
    Proceedings of the National Academy of Sciences, 93(22) pp. 12098​-12103​.​ DOI: https://doi.org/10.1073/pnas.93.22.12098 
    ​Details  DOI 

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