Prof. Dr. Rolf Daniel

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  • 2023 | Journal Article | 
    ​ ​Friedrich, Ines, et al. "Brevundimonas and Serratia as host systems for assessing associated environmental viromes and phage diversity by complementary approaches​." ​Frontiers in Microbiology, vol. 14, ​2023, , ​doi: 10.3389/fmicb.2023.1095850. 
    ​Details  DOI 
  • 2023 | Journal Article | 
    ​ ​Iddris, Najeeb Al-Amin, et al. "Mechanical weeding enhances ecosystem multifunctionality and profit in industrial oil palm​." ​Nature Sustainability, ​2023, , ​doi: 10.1038/s41893-023-01076-x. 
    ​Details  DOI 
  • 2023 | Journal Article | 
    ​ ​Hollensteiner, Jacqueline, et al. "Metagenome-assembled genomes from particle-associated microbial communities in the mesopelagic zone of the Pacific Ocean​." ​Microbiology Resource Announcements, ​2023, , ​doi: 10.1128/MRA.00614-23. 
    ​Details  DOI 
  • 2023 | Journal Article | 
    ​ ​Hollensteiner, Jacqueline, et al. "Pan-genome analysis of six Paracoccus type strain genomes reveal lifestyle traits​." ​PLoS One, vol. 18, no. 12, ​2023, , ​doi: 10.1371/journal.pone.0287947. 
    ​Details  DOI 
  • 2022 | Journal Article | 
    ​ ​Lewkowski, Oleg, et al. "In the battle of the disease: a transcriptomic analysis of European foulbrood-diseased larvae of the Western honey bee (Apis mellifera)​." ​BMC Genomics, vol. 23, no. 1, ​2022, , ​doi: 10.1186/s12864-022-09075-6. 
    ​Details  DOI 
  • 2022 | Journal Article | Research Paper | 
    ​ ​Lu, Mingji, Dominik Schneider, and Rolf Daniel. "Metagenomic Screening for Lipolytic Genes Reveals an Ecology-Clustered Distribution Pattern​." ​Frontiers in Microbiology, vol. 13, ​2022, , ​doi: 10.3389/fmicb.2022.851969. 
    ​Details  DOI 
  • 2022 | Journal Article | 
    ​ ​Breisch, Jennifer, et al. "The carnitine degradation pathway of Acinetobacter baumannii and its role in virulence​." ​Environmental Microbiology, vol. 24, no. 9, ​2022, pp. 4437​-4448​, ​doi: 10.1111/1462-2920.16075. 
    ​Details  DOI 
  • 2022 | Journal Article | Research Paper | 
    ​ ​Werner, Katharina A., et al. "Thermophilic Composting of Human Feces: Development of Bacterial Community Composition and Antimicrobial Resistance Gene Pool​." ​Frontiers in Microbiology, vol. 13, ​2022, , ​doi: 10.3389/fmicb.2022.824834. 
    ​Details  DOI 
  • 2022 | Journal Article | Research Paper
    ​ ​Rudolph, Katja, et al. "Drivers of gut microbiome variation within and between groups of a wild Malagasy primate​." ​Microbiome, vol. 10, no. 1, ​2022, , ​doi: 10.1186/s40168-021-01223-6. 
    ​Details  DOI 
  • 2022 | Journal Article | Research Paper | 
    ​ ​Ryadin, Aisjah R., et al. "Early Effects of Fertilizer and Herbicide Reduction on Root-Associated Biota in Oil Palm Plantations​." ​Agronomy, vol. 12, no. 1, ​2022, , ​doi: 10.3390/agronomy12010199. 
    ​Details  DOI 
  • 2022 | Journal Article | Research Paper | 
    ​ ​Chacón, Florencia Isabel, et al. "Native Cultivable Bacteria from the Blueberry Microbiome as Novel Potential Biocontrol Agents​." ​Microorganisms, vol. 10, no. 5, ​2022, p. 969​, ​doi: 10.3390/microorganisms10050969. 
    ​Details  DOI 
  • 2022 | Journal Article | Research Paper | 
    ​ ​Murillo, Tatiana, et al. "Dietary shifts and social interactions drive temporal fluctuations of the gut microbiome from wild redfronted lemurs​." ​ISME Communications, vol. 2, no. 1, ​2022, , ​doi: 10.1038/s43705-021-00086-0. 
    ​Details  DOI 
  • 2022 | Journal Article
    ​ ​Schoch, Teresa, et al. "Reclassification of Clostridium aurantibutyricum Hellinger 1944 and Clostridium roseum (ex McCoy and McClung 1935) Cato et al. 1988​." ​International Journal of Systematic and Evolutionary Microbiology, vol. 72, no. 10, ​2022, , ​doi: 10.1099/ijsem.0.005589. 
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  • 2022 | Journal Article | Research Paper | 
    ​ ​von Hoyningen-Huene, Avril Jean Elisabeth, et al. "DNA- and RNA-based bacterial communities and geochemical zonation under changing sediment porewater dynamics on the Aldabra Atoll​." ​Scientific Reports, vol. 12, no. 1, ​2022, , ​doi: 10.1038/s41598-022-07980-0. 
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  • 2022 | Journal Article | Research Paper
    ​ ​Fussmann, Dario, et al. "Decoupling of Pore Water Chemistry, Bacterial Community Profiles, and Carbonate Mud Diagenesis in a Land-Locked Pool on Aldabra (Seychelles, Indian Ocean)​." ​Geomicrobiology Journal, ​2022, pp. 1​-19​, ​doi: 10.1080/01490451.2022.2070689. 
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  • 2022 | Journal Article | Research Paper | 
    ​ ​Rivera Pérez, Carmen Alicia, et al. "Transcriptional Landscape of Ectomycorrhizal Fungi and Their Host Provides Insight into N Uptake from Forest Soil​." ​mSystems, vol. 7, no. 1, ​2022, , ​doi: 10.1128/mSystems.00957-21. 
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  • 2022 | Preprint | 
    ​ ​Montoya-Sánchez, Vannesa, et al. "Landscape heterogeneity and soil biota are central to multi-taxa diversity for landscape restoration​." ​​2022. doi: 10.1101/2022.10.31.514517. 
    ​Details  DOI 
  • 2022 | Journal Article | 
    ​ ​Eze, Michael O., et al. "Bacteria-plant interactions synergistically enhance biodegradation of diesel fuel hydrocarbons​." ​Communications Earth & Environment, vol. 3, no. 1, ​2022, , ​doi: 10.1038/s43247-022-00526-2. 
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  • 2021 | Journal Article | 
    ​ ​Friedrich, Ines, et al. "Living in a Puddle of Mud: Isolation and Characterization of Two Novel Caulobacteraceae Strains Brevundimonas pondensis sp. nov. and Brevundimonas goettingensis sp. nov.​." ​Applied Microbiology, vol. 1, no. 1, ​2021, , ​doi: 10.3390/applmicrobiol1010005. 
    ​Details  DOI 
  • 2021 | Journal Article
    ​ ​Rosenbaum, Florian P., et al. "Lactate metabolism in strictly anaerobic microorganisms with a soluble NAD + ‐dependent l ‐lactate dehydrogenase​." ​Environmental Microbiology, ​2021, , ​doi: 10.1111/1462-2920.15657. 
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  • 2021 | Journal Article
    ​ ​Richts, Björn, et al. "A Bacillus subtilis   Δ pdxT mutant suppresses vitamin B6 limitation by acquiring mutations enhancing pdxS gene dosage and ammonium assimilation​." ​Environmental Microbiology Reports, vol. 13, no. 2, ​2021, pp. 218​-233​, ​doi: 10.1111/1758-2229.12936. 
    ​Details  DOI 
  • 2021 | Journal Article | Research Paper | 
    ​ ​Krüger, Larissa, et al. "Essentiality of c-di-AMP in Bacillus subtilis: Bypassing mutations converge in potassium and glutamate homeostasis​." ​PLoS Genetics, vol. 17, no. 1, ​2021, , ​doi: 10.1371/journal.pgen.1009092. 
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  • 2021 | Journal Article | Research Paper | 
    ​ ​Lu, Mingji, and Rolf Daniel. "A Novel Carboxylesterase Derived from a Compost Metagenome Exhibiting High Stability and Activity towards High Salinity​." ​Genes, vol. 12, no. 1, ​2021, p. 122​, ​doi: 10.3390/genes12010122. 
    ​Details  DOI 
  • 2021 | Journal Article | Research Paper | 
    ​ ​Friedrich, Ines, et al. "Down in the pond: Isolation and characterization of a new Serratia marcescens strain (LVF3) from the surface water near frog’s lettuce (Groenlandia densa)​." ​PLoS One, vol. 16, no. 11, ​2021, , ​doi: 10.1371/journal.pone.0259673. 
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  • 2021 | Journal Article | Research Paper | 
    ​ ​von Hoyningen-Huene, Avril J. E., et al. "Pontibacillus sp. ALD_SL1 and Psychroflexus sp. ALD_RP9, two novel moderately halophilic bacteria isolated from sediment and water from the Aldabra Atoll, Seychelles​." ​PLoS One, vol. 16, no. 8, ​2021, p. e0256639​, ​doi: 10.1371/journal.pone.0256639. 
    ​Details  DOI 
  • 2020 | Journal Article | Erratum
    ​ ​Wübbeler, Jan Hendrik, et al. "Corrigendum: Sphingomonas jeddahensis sp. nov., isolated from Saudi Arabian desert soil​." ​International Journal of Systematic and Evolutionary Microbiology, vol. 70, no. 4, ​2020, pp. 2955​-2955​, ​doi: 10.1099/ijsem.0.004039. 
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  • 2020 | Journal Article
    ​ ​Flaiz, Maximilian, et al. "Caproicibacter fermentans gen. nov., sp. nov., a new caproate-producing bacterium and emended description of the genus Caproiciproducens​." ​International Journal of Systematic and Evolutionary Microbiology, vol. 70, no. 7, ​2020, pp. 4269​-4279​, ​doi: 10.1099/ijsem.0.004283. 
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  • 2020 | Journal Article
    ​ ​Alio, Ifey, et al. "Phenotypic and Transcriptomic Analyses of Seven Clinical Stenotrophomonas maltophilia Isolates Identify a Small Set of Shared and Commonly Regulated Genes Involved in the Biofilm Lifestyle​." ​Applied and Environmental Microbiology, vol. 86, no. 24, ​2020, , ​doi: 10.1128/AEM.02038-20. 
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  • 2020 | Journal Article
    ​ ​Tiede, Julia, et al. "Seasonal variation in the diet of the serotine bat (Eptesicus serotinus): A high-resolution analysis using DNA metabarcoding​." ​Basic and Applied Ecology, vol. 49, ​2020, pp. 1​-12​, ​doi: 10.1016/j.baae.2020.09.004. 
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  • 2020 | Journal Article
    ​ ​Salgar-Chaparro, Silvia J., et al. "Complete Genome Sequence of Pseudomonas balearica Strain EC28, an Iron-Oxidizing Bacterium Isolated from Corroded Steel​." ​Microbiology resource announcements, vol. 9, no. 19, ​2020, , ​doi: 10.1128/MRA.00275-20. 
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  • 2020 | Journal Article
    ​ ​Aloo, Becky N., et al. "Whole-Genome Sequences of Three Plant Growth-Promoting Rhizobacteria Isolated from Solanum tuberosum L. Rhizosphere in Tanzania​." ​Microbiology resource announcements, vol. 9, no. 20, ​2020, , ​doi: 10.1128/MRA.00371-20. 
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  • 2020 | Journal Article
    ​ ​Poehlein, Anja, et al. "Complete Genome Sequence of Sporomusa termitida DSM 4440T​." ​Microbiology resource announcements, vol. 9, no. 11, ​2020, , ​doi: 10.1128/MRA.00046-20. 
    ​Details  DOI 
  • 2020 | Journal Article
    ​ ​Hollensteiner, Jacqueline, et al. "Genome Sequence of Komagataeibacter saccharivorans Strain JH1, Isolated from Fruit Flies​." ​Microbiology resource announcements, vol. 9, no. 13, ​2020, , ​doi: 10.1128/MRA.00098-20. 
    ​Details  DOI 
  • 2020 | Journal Article
    ​ ​Schneider, Dominik, et al. "Metagenomes of Wastewater at Different Treatment Stages in Central Germany​." ​Microbiology resource announcements, vol. 9, no. 15, ​2020, , ​doi: 10.1128/MRA.00201-20. 
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  • 2020 | Journal Article
    ​ ​Klewing, Anika, et al. "Resistance to serine in Bacillus subtilis : identification of the serine transporter YbeC and of a metabolic network that links serine and threonine metabolism​." ​Environmental Microbiology, vol. 22, no. 9, ​2020, pp. 3937​-3949​, ​doi: 10.1111/1462-2920.15179. 
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  • 2020 | Journal Article
    ​ ​Schüler, Miriam A, et al. "Genome sequence analysis of the temperate bacteriophage TBP2 of the solvent producer Clostridium saccharoperbutylacetonicum N1-4 (HMT, ATCC 27021)​." ​FEMS Microbiology Letters, vol. 367, no. 14, ​2020, , ​doi: 10.1093/femsle/fnaa103. 
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  • 2020 | Journal Article
    ​ ​Aloo, B. N., et al. "Molecular Identification and In Vitro Plant Growth-Promoting Activities of Culturable Potato (Solanum tuberosum L.) Rhizobacteria in Tanzania​." ​Potato Research, ​2020, , ​doi: 10.1007/s11540-020-09465-x. 
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  • 2020 | Journal Article
    ​ ​Krüger, Larissa, et al. "Two Ways To Convert a Low-Affinity Potassium Channel to High Affinity: Control of Bacillus subtilis KtrCD by Glutamate​." ​Journal of Bacteriology, vol. 202, no. 12, ​2020, , ​doi: 10.1128/JB.00138-20. 
    ​Details  DOI 
  • 2020 | Journal Article | 
    ​ ​Egelkamp, Richard, et al. "From sequence to function: a new workflow for nitrilase identification​." ​Applied Microbiology and Biotechnology, vol. 104, no. 11, ​2020, pp. 4957​-4970​, ​doi: 10.1007/s00253-020-10544-9. 
    ​Details  DOI 
  • 2020 | Journal Article | 
    ​ ​Redl, Stephanie, et al. "Genome-Based Comparison of All Species of the Genus Moorella, and Status of the Species Moorella thermoacetica and Moorella thermoautotrophica​." ​Frontiers in Microbiology, vol. 10, ​2020, , ​doi: 10.3389/fmicb.2019.03070. 
    ​Details  DOI 
  • 2020 | Journal Article | Research Paper | 
    ​ ​Ballauff, Johannes, et al. "Legacy Effects Overshadow Tree Diversity Effects on Soil Fungal Communities in Oil Palm-Enrichment Plantations​." ​Microorganisms, vol. 8, no. 10, ​2020, p. 1577​, ​doi: 10.3390/microorganisms8101577. 
    ​Details  DOI 
  • 2020 | Journal Article | 
    ​ ​Nguyen, Dung Quang, et al. "Soil and root nutrient chemistry structure root‐associated fungal assemblages in temperate forests​." ​Environmental Microbiology, vol. 22, no. 8, ​2020, pp. 3081​-3095​, ​doi: 10.1111/1462-2920.15037. 
    ​Details  DOI 
  • 2020 | Journal Article | Research Paper | 
    ​ ​Berkelmann, Dirk, et al. "Unravelling the effects of tropical land use conversion on the soil microbiome​." ​Environmental Microbiome, vol. 15, no. 1, ​2020, , ​doi: 10.1186/s40793-020-0353-3. 
    ​Details  DOI 
  • 2020 | Journal Article | 
    ​ ​Perez, María Florencia, et al. "First Report on the Plasmidome From a High-Altitude Lake of the Andean Puna​." ​Frontiers in Microbiology, vol. 11, ​2020, , ​doi: 10.3389/fmicb.2020.01343. 
    ​Details  DOI 
  • 2020 | Journal Article | 
    ​ ​Friedrich, Ines, et al. "First Complete Genome Sequences of Janthinobacterium lividum EIF1 and EIF2 and Their Comparative Genome Analysis​." ​Genome Biology and Evolution, vol. 12, no. 10, ​2020, pp. 1782​-1788​, ​doi: 10.1093/gbe/evaa148. 
    ​Details  DOI 
  • 2020 | Journal Article | 
    ​ ​Hollensteiner, Jacqueline, et al. "Complete Genome of Roseobacter ponti DSM 106830T​." ​Genome Biology and Evolution, vol. 12, no. 7, ​2020, pp. 1013​-1018​, ​doi: 10.1093/gbe/evaa114. 
    ​Details  DOI 
  • 2020 | Journal Article | Research Paper | 
    ​ ​Berkelmann, Dirk, et al. "Soil bacterial community structures in relation to different oil palm management practices​." ​Scientific Data, vol. 7, no. 1, ​2020, , ​doi: 10.1038/s41597-020-00752-3. 
    ​Details  DOI 
  • 2020 | Journal Article | 
    ​ ​Wemheuer, Franziska, et al. "Tax4Fun2: prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene sequences​." ​Environmental Microbiome, vol. 15, no. 1, ​2020, , ​doi: 10.1186/s40793-020-00358-7. 
    ​Details  DOI 
  • 2020 | Journal Article | 
    ​ ​Wischer, Daniela, et al. "Novel Antimicrobial Cellulose Fleece Inhibits Growth of Human-Derived Biofilm-Forming Staphylococci During the SIRIUS19 Simulated Space Mission​." ​Frontiers in Microbiology, vol. 11, ​2020, , ​doi: 10.3389/fmicb.2020.01626. 
    ​Details  DOI 
  • 2020 | Journal Article | 
    ​ ​Fussmann, Dario, et al. "Authigenic formation of Ca-Mg carbonates in the shallow alkaline Lake Neusiedl, Austria​." ​Biogeosciences, vol. 17, no. 7, ​2020, pp. 2085​-2106​, ​doi: 10.5194/bg-17-2085-2020. 
    ​Details  DOI 
  • 2020 | Journal Article | Research Paper | 
    ​ ​Grass, Ingo, et al. "Trade-offs between multifunctionality and profit in tropical smallholder landscapes​." ​Nature Communications, vol. 11, no. 1, ​2020, p. 1186​, ​doi: 10.1038/s41467-020-15013-5. 
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  • 2020 | Journal Article | 
    ​ ​Wemheuer, Franziska, et al. "Agroforestry Management Systems Drive the Composition, Diversity, and Function of Fungal and Bacterial Endophyte Communities in Theobroma Cacao Leaves​." ​Microorganisms, vol. 8, no. 3, ​2020, , ​doi: 10.3390/microorganisms8030405. 
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  • 2019 | Journal Article
    ​ ​Steinert, Georg, et al. "Prokaryotic Diversity and Community Patterns in Antarctic Continental Shelf Sponges​." ​Frontiers in Marine Science, vol. 6, ​2019, , ​doi: 10.3389/fmars.2019.00297. 
    ​Details  DOI 
  • 2019 | Journal Article
    ​ ​Hollensteiner, Jacqueline, Anja Poehlein, and Rolf Daniel. "Complete Genome Sequence of Marinobacter sp. Strain JH2, Isolated from Seawater of the Kiel Fjord​." ​Microbiology resource announcements, vol. 8, no. 30, ​2019, , ​doi: 10.1128/MRA.00596-19. 
    ​Details  DOI 
  • 2019 | Journal Article
    ​ ​Bengelsdorf, Frank R., et al. "Genome Sequence of the Caproic Acid-Producing Bacterium Caproiciproducens galactitolivorans BS-1T (JCM 30532)​." ​Microbiology resource announcements, vol. 8, no. 31, ​2019, , ​doi: 10.1128/MRA.00346-19. 
    ​Details  DOI 
  • 2019 | Journal Article
    ​ ​Gundlach, Jan, et al. "Sustained sensing in potassium homeostasis: Cyclic di-AMP controls potassium uptake by KimA at the levels of expression and activity​." ​Journal of Biological Chemistry, vol. 294, no. 24, ​2019, pp. 9605​-9614​, ​doi: 10.1074/jbc.RA119.008774. 
    ​Details  DOI 
  • 2019 | Journal Article
    ​ ​Dinter, Thomas, et al. "Impact of sea level change on coastal soil organic matter, priming effects and prokaryotic community assembly​." ​FEMS Microbiology Ecology, vol. 95, no. 10, ​2019, , ​doi: 10.1093/femsec/fiz129. 
    ​Details  DOI 
  • 2019 | Journal Article | 
    ​ ​Egelkamp, Richard, et al. "Impact of Nitriles on Bacterial Communities​." ​Frontiers in Environmental Science, vol. 7, ​2019, , ​doi: 10.3389/fenvs.2019.00103. 
    ​Details  DOI 
  • 2019 | Journal Article | 
    ​ ​Pratama, Rahadian, et al. "First Insights Into Bacterial Gastrointestinal Tract Communities of the Eurasian Beaver (Castor fiber)​." ​Frontiers in Microbiology, vol. 10, ​2019, , ​doi: 10.3389/fmicb.2019.01646. 
    ​Details  DOI 
  • 2019 | Journal Article | 
    ​ ​Rudolph, Katja, et al. "One size fits all? Relationships among group size, health, and ecology indicate a lack of an optimal group size in a wild lemur population​." ​Behavioral Ecology and Sociobiology, vol. 73, no. 9, ​2019, , ​doi: 10.1007/s00265-019-2746-0. 
    ​Details  DOI 
  • 2019 | Journal Article | 
    ​ ​Reuß, Daniel R, et al. "Topoisomerase IV can functionally replace all type 1A topoisomerases in Bacillus subtilis​." ​Nucleic Acids Research, vol. 47, no. 10, ​2019, pp. 5231​-5242​, ​doi: 10.1093/nar/gkz260. 
    ​Details  DOI 
  • 2019 | Preprint
    ​ ​Fussmann, Dario, et al. "Authigenic formation of Ca-Mg carbonates in the shallow alkaline Lake Neusiedl, Austria​." ​​2019. doi: 10.5194/bg-2019-449. 
    ​Details  DOI 
  • 2019 | Journal Article
    ​ ​Bakenhus, Insa, et al. "Distinct relationships between fluorescence in situ hybridization and 16S rRNA gene- and amplicon-based sequencing data of bacterioplankton lineages​." ​Systematic and Applied Microbiology, vol. 42, no. 5, ​2019, , ​doi: 10.1016/j.syapm.2019.06.005. 
    ​Details  DOI  PMID  PMC 
  • 2019 | Journal Article
    ​ ​Lu, Mingji, Amélie Dukunde, and Rolf Daniel. "Biochemical profiles of two thermostable and organic solvent-tolerant esterases derived from a compost metagenome​." ​Applied microbiology and biotechnology, vol. 103, no. 8, ​2019, pp. 3421​-3437​, ​doi: 10.1007/s00253-019-09695-1. 
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  • 2019 | Journal Article | 
    ​ ​Lüneberg, Kathia, et al. "Land Use Change and Water Quality Use for Irrigation Alters Drylands Soil Fungal Community in the Mezquital Valley, Mexico​." ​Frontiers in Microbiology, vol. 10, ​2019, p. 1220​, ​doi: 10.3389/fmicb.2019.01220. 
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  • 2019 | Journal Article
    ​ ​Schröter, Kristina, et al. "Assembly processes of trophic guilds in the root mycobiome of temperate forests​." ​Molecular Ecology, vol. 28, no. 2, ​2019, pp. 348​-364​, ​doi: 10.1111/mec.14887. 
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  • 2019 | Journal Article | 
    ​ ​Castillo Villamizar, Genis Andrés, et al. "Functional Metagenomics Reveals a New Catalytic Domain, the Metallo-β-Lactamase Superfamily Domain, Associated with Phytase Activity​." ​mSphere, vol. 4, no. 3, ​2019, , ​doi: 10.1128/mSphere.00167-19. 
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  • 2019 | Journal Article | Research Paper | 
    ​ ​Schulz, Garvin, et al. "Changes in Trophic Groups of Protists With Conversion of Rainforest Into Rubber and Oil Palm Plantations​." ​Frontiers in Microbiology, vol. 10, ​2019, , ​doi: 10.3389/fmicb.2019.00240. 
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  • 2019 | Journal Article | 
    ​ ​Wemheuer, Franziska, et al. "Primary Production in the Water Column as Major Structuring Element of the Biogeographical Distribution and Function of Archaea in Deep-Sea Sediments of the Central Pacific Ocean​." ​Archaea, vol. 2019, ​2019, pp. 1​-12​, ​doi: 10.1155/2019/3717239. 
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  • 2019 | Journal Article | 
    ​ ​Wemheuer, Franziska, et al. "Deciphering bacterial and fungal endophyte communities in leaves of two maple trees with green islands​." ​Scientific Reports, vol. 9, no. 1, ​2019, , ​doi: 10.1038/s41598-019-50540-2. 
    ​Details  DOI  PMID  PMC 
  • 2019 | Journal Article | 
    ​ ​Pinter, Niko, et al. "Signal peptide peptidase activity connects the unfolded protein response to plant defense suppression by Ustilago maydis​." ​PLOS Pathogens, vol. 15, no. 4, ​2019, , ​doi: 10.1371/journal.ppat.1007734. 
    ​Details  DOI  PMID  PMC 
  • 2019 | Journal Article | 
    ​ ​Castillo Villamizar, Genis Andrés, et al. "Functional Metagenomics Reveals an Overlooked Diversity and Novel Features of Soil-Derived Bacterial Phosphatases and Phytases​." ​mBio, vol. 10, no. 1, ​2019, p. e01966-18​, ​doi: 10.1128/mBio.01966-18. 
    ​Details  DOI  PMID  PMC 
  • 2019 | Journal Article | 
    ​ ​von Hoyningen-Huene, Avril Jean Elisabeth, et al. "Bacterial succession along a sediment porewater gradient at Lake Neusiedl in Austria​." ​Scientific Data, vol. 6, no. 1, ​2019, , ​doi: 10.1038/s41597-019-0172-9. 
    ​Details  DOI  PMID  PMC 
  • 2018 | Journal Article
    ​ ​Kremp, Florian, et al. "Methanol metabolism in the acetogenic bacterium Acetobacterium woodii​." ​Environmental Microbiology, vol. 20, no. 12, ​2018, pp. 4369​-4384​, ​doi: 10.1111/1462-2920.14356. 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Nasfi, Zina, et al. "Draft Genome Sequence of Bacillus sp. Strain M21, Isolated from the Arid Area of Matmata, Tunisia​." ​Genome Announcements, vol. 6, no. 17, ​2018, , ​doi: 10.1128/genomeA.00323-18. 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Amiri Moghaddam, Jamshid, et al. "Draft Genome Sequences of the Obligatory Marine Myxobacterial Strains Enhygromyxa salina SWB005 and SWB007​." ​Genome Announcements, vol. 6, no. 17, ​2018, , ​doi: 10.1128/genomeA.00324-18. 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Zhang, Qingyang, et al. "Draft Genome Sequence of Komagataeibacter maltaceti LMG 1529 T , a Vinegar-Producing Acetic Acid Bacterium Isolated from Malt Vinegar Brewery Acetifiers​." ​Genome Announcements, vol. 6, no. 16, ​2018, p. e00330-18​, ​doi: 10.1128/genomeA.00330-18. 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Poehlein, Anja, et al. "First Insight into the Genome Sequence of Clostridium vincentii DSM 10228, Isolated from Sediment of the McMurdo Ice Shelf, Antarctica​." ​Genome Announcements, vol. 6, no. 15, ​2018, p. e00334-18​, ​doi: 10.1128/genomeA.00334-18. 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Meinert, Christina, et al. "The unexpected function of a Flavin-dependent oxidoreductase (Fox) from Variovorax paradoxus TBEA6.​." ​FEMS Microbiology Letters, ​2018, , ​doi: 10.1093/femsle/fny011. 
    ​Details  DOI 
  • 2018 | Monograph
    ​ ​Daniel, Rolf, Meinhard Simon, and Bernd Wemheuer. Molecular ecology and genetic diversity of the Roseobacter clade​. ​​Frontiers Media SA, ​2018. doi: 10.3389/978-2-88945-538-6. 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Poehlein, Anja, et al. "Complete Genome Sequence of the Methanococcus maripaludis Type Strain JJ (DSM 2067), a Model for Selenoprotein Synthesis in Archaea​." ​Genome Announcements, vol. 6, no. 14, ​2018, , ​doi: 10.1128/genomeA.00237-18. 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Poehlein, Anja, et al. "First Insight into the Genome Sequence of Clostridium liquoris DSM 100320, a Butyrate- and Ethanol-Producing Bacterium​." ​Genome Announcements, vol. 6, no. 18, ​2018, , ​doi: 10.1128/genomeA.00376-18. 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Poehlein, Anja, et al. "Draft Genome Sequence of the Butanoic Acid-Producing Bacterium Clostridium luticellarii DSM 29923, Used for Strong Aromatic Chinese Liquor Production​." ​Genome Announcements, vol. 6, no. 18, ​2018, , ​doi: 10.1128/genomeA.00377-18. 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Poehlein, Anja, et al. "First Insights into the Genome Sequence of Clostridium thermopalmarium DSM 5974, a Butyrate-Producing Bacterium Isolated from Palm Wine​." ​Genome Announcements, vol. 6, no. 17, ​2018, , ​doi: 10.1128/genomeA.00338-18. 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Poehlein, Anja, et al. "Draft Genome Sequence of the Thermophilic Acetogen Moorella humiferrea DSM 23265​." ​Genome Announcements, vol. 6, no. 17, ​2018, , ​doi: 10.1128/genomeA.00357-18. 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Poehlein, Anja, et al. "Draft Genome Sequence of the Hydrogenogenic Carboxydotroph Moorella stamsii DSM 26271​." ​Genome Announcements, vol. 6, no. 18, ​2018, , ​doi: 10.1128/genomeA.00345-18. 
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  • 2018 | Journal Article
    ​ ​Reuß, Daniel R., et al. "Changes of DNA topology affect the global transcription landscape and allow rapid growth of a Bacillus subtilis mutant lacking carbon catabolite repression​." ​Metabolic Engineering, vol. 45, ​2018, pp. 171​-179​, ​doi: 10.1016/j.ymben.2017.12.004. 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Schilling, Tobias, et al. "Complete Genome Sequence of vB_BveP-Goe6, a Virus Infecting Bacillus velezensis FZB42​." ​Genome Announcements, vol. 6, no. 8, ​2018, , ​doi: 10.1128/genomeA.00008-18. 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Dib, Julian Rafael, et al. "Complete Genome Sequences of pLMA1 and pLMA7, Two Large Linear Plasmids of Micrococcus Strains Isolated from a High-Altitude Lake in Argentina​." ​Genome Announcements, vol. 6, no. 8, ​2018, , ​doi: 10.1128/genomeA.00010-18. 
    ​Details  DOI 
  • 2018 | Preprint
    ​ ​Wemheuer, Franziska, et al. "Tax4Fun2: a R-based tool for the rapid prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene marker gene sequences​." ​​2018. doi: 10.1101/490037. 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Schall, Peter, et al. "The impact of even-aged and uneven-aged forest management on regional biodiversity of multiple taxa in European beech forests​." ​Journal of Applied Ecology, vol. 55, no. 1, ​2018, pp. 267​-278​, ​doi: 10.1111/1365-2664.12950. 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Hollensteiner, Jacqueline, et al. "Draft Genome Sequence of the Endophyte Bacillus mycoides Strain GM5LP Isolated from Lolium perenne​." ​Genome Announcements, vol. 6, no. 4, ​2018, , ​doi: 10.1128/genomeA.01517-17. 
    ​Details  DOI 
  • 2018 | Journal Article | 
    ​ ​Bakenhus, Insa, et al. "Genome sequence of Planktotalea frisia type strain (SH6-1T), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloom​." ​Standards in Genomic Sciences, vol. 13, no. 1, ​2018, , ​doi: 10.1186/s40793-018-0311-5. 
    ​Details  DOI 
  • 2018 | Journal Article | 
    ​ ​Poehlein, Anja, et al. "Comparative Genomic Analysis of Members of the Genera Methanosphaera and Methanobrevibacter Reveals Distinct Clades with Specific Potential Metabolic Functions​." ​Archaea, vol. 2018, ​2018, pp. 1​-9​, ​doi: 10.1155/2018/7609847. 
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  • 2018 | Journal Article | 
    ​ ​Lüneberg, Kathia, et al. "Drylands soil bacterial community is affected by land use change and different irrigation practices in the Mezquital Valley, Mexico​." ​Scientific Reports, vol. 8, no. 1, ​2018, , ​doi: 10.1038/s41598-018-19743-x. 
    ​Details  DOI 
  • 2018 | Journal Article | Research Paper | 
    ​ ​Berkelmann, Dirk, et al. "How Rainforest Conversion to Agricultural Systems in Sumatra (Indonesia) Affects Active Soil Bacterial Communities​." ​Frontiers in Microbiology, vol. 9, ​2018, , ​doi: 10.3389/fmicb.2018.02381. 
    ​Details  DOI 
  • 2018 | Journal Article | 
    ​ ​Groß, Uwe, et al. "Comparative genome and phenotypic analysis of three Clostridioides difficile strains isolated from a single patient provide insight into multiple infection of C. difficile.​." ​BMC Genomics, vol. 19, no. 1, ​2018, pp. 1​-14​, ​doi: 10.1186/s12864-017-4368-0. 
    ​Details  DOI  PMID  PMC 
  • 2018 | Journal Article
    ​ ​Wemheuer, Franziska, et al. "Draft Genome Sequence of the Endophyte Paenibacillus sp. Strain GM2FR Isolated from Festuca rubra​." ​Genome Announcements, vol. 6, no. 6, ​2018, pp. e00017​-e00018​, ​doi: 10.1128/genomeA.00017-18. 
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  • 2018 | Journal Article
    ​ ​Wemheuer, Franziska, et al. "Draft Genome Sequence of the Endophyte Bacillus mycoides Strain GM6LP Isolated from Lolium perenne​." ​Genome Announcements, vol. 6, no. 5, ​2018, , ​doi: 10.1128/genomeA.00011-18. 
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  • 2018 | Journal Article | 
    ​ ​Sann, Christina, et al. "Preliminary Investigation of Species Diversity of Rice Hopper Parasitoids in Southeast Asia.​." ​Insects, vol. 9, no. 1, ​2018, pp. 1​-12​, ​doi: 10.3390/insects9010019. 
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  • 2018 | Journal Article | Editorial Contribution (Editorial, Introduction, Epilogue)
    ​ ​Daniel, Rolf, Meinhard Simon, and Bernd Wemheuer. "Editorial: Molecular Ecology and Genetic Diversity of the Roseobacter Clade​." ​Frontiers in Microbiology, vol. 9, ​2018, , ​doi: 10.3389/fmicb.2018.01185. 
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  • 2017 | Journal Article | 
    ​ ​Schneider, Dominik, et al. "Gut bacterial communities of diarrheic patients with indications of Clostridioides difficile infection.​." ​Scientific data, vol. 4, ​2017, , ​doi: 10.1038/sdata.2017.152. 
    ​Details  DOI  PMID  PMC 
  • 2017 | Journal Article
    ​ ​Villamizar, Genis Andrés Castillo, Rolf Daniel, and Anja Poehlein. "First Insights into the Genome Sequence of the Strictly Anaerobic Homoacetogenic Sporomusa sphaeroides Strain E (DSM 2875)​." ​Genome Announcements, vol. 5, no. 12, ​2017, , ​doi: 10.1128/genomeA.00037-17. 
    ​Details  DOI 
  • 2017 | Journal Article
    ​ ​Nacke, Heiko, Rolf Daniel, and Anja Poehlein. "Genome Sequence of Creatinine-Fermenting Tissierella creatinophila Strain KRE 4T (DSM 6911)​." ​Genome Announcements, vol. 5, no. 12, ​2017, , ​doi: 10.1128/genomeA.00051-17. 
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  • 2017 | Journal Article
    ​ ​Poehlein, Anja, et al. "First Insights into the Genome Sequence of Pseudomonas oleovorans DSM 1045​." ​Genome Announcements, vol. 5, no. 32, ​2017, , ​doi: 10.1128/genomeA.00774-17. 
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  • 2017 | Journal Article
    ​ ​Poehlein, Anja, et al. "Genome Sequence of Uric Acid-Fermenting Eubacterium angustum DSM 1989T (MK-1)​." ​Genome Announcements, vol. 5, no. 2, ​2017, , ​doi: 10.1128/genomeA.01439-16. 
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  • 2017 | Journal Article
    ​ ​Nacke, Heiko, et al. "Links between seawater flooding, soil ammonia oxidiser communities and their response to changes in salinity​." ​FEMS Microbiology Ecology, vol. 93, no. 11, ​2017, , ​doi: 10.1093/femsec/fix144. 
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  • 2017 | Journal Article
    ​ ​Gabris, Christina, et al. "Genome Sequence of Lactobacillus sunkii Strain CG_D​." ​Genome Announcements, vol. 5, no. 2, ​2017, , ​doi: 10.1128/genomeA.01487-16. 
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  • 2017 | Journal Article
    ​ ​Gabris, Christina, et al. "Genome Sequence of Enterococcus faecalis Strain CG_E​." ​Genome Announcements, vol. 5, no. 2, ​2017, , ​doi: 10.1128/genomeA.01488-16. 
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  • 2017 | Journal Article
    ​ ​Poehlein, Anja, et al. "Draft Genome Sequences of Sphingomonas mucosissima DSM 17494 and Sphingomonas dokdonensis DSM 21029​." ​Genome Announcements, vol. 5, no. 35, ​2017, , ​doi: 10.1128/genomeA.00889-17. 
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  • 2017 | Journal Article
    ​ ​Poehlein, Anja, et al. "First Insights into the Genome Sequence of Clostridium oryzae DSM 28571, Isolated from the Soil of a Japanese Rice Field​." ​Genome Announcements, vol. 5, no. 24, ​2017, , ​doi: 10.1128/genomeA.00539-17. 
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  • 2017 | Journal Article
    ​ ​Poehlein, Anja, et al. "First Insights into the Genome of the Cr(VI)-Reducing Bacterium Clostridium chromiireducens DSM 23318​." ​Genome Announcements, vol. 5, no. 22, ​2017, , ​doi: 10.1128/genomeA.00420-17. 
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  • 2017 | Journal Article
    ​ ​Karl, Michael M., et al. "Complete Genome Sequence of the Autotrophic Acetogen Clostridium formicaceticum DSM 92T Using Nanopore and Illumina Sequencing Data​." ​Genome Announcements, vol. 5, no. 21, ​2017, , ​doi: 10.1128/genomeA.00423-17. 
    ​Details  DOI 
  • 2017 | Journal Article
    ​ ​Humphreys, Jonathan R., Rolf Daniel, and Anja Poehlein. "Genome Sequence of the Homoacetogenic, Gram-Negative, Endospore-Forming Bacterium Sporomusa acidovorans DSM 3132​." ​Genome Announcements, vol. 5, no. 38, ​2017, , ​doi: 10.1128/genomeA.00981-17. 
    ​Details  DOI 
  • 2017 | Journal Article
    ​ ​Gundlach, Jan, et al. "Adaptation of Bacillus subtilis to Life at Extreme Potassium Limitation​." ​mBio, vol. 8, no. 4, ​2017, , ​doi: 10.1128/mBio.00861-17. 
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  • 2017 | Journal Article
    ​ ​Poehlein, Anja, et al. "First Insight into the Genome Sequence of Clostridium thermobutyricum DSM 4928, a Butyrate-Producing Moderate Thermophile​." ​Genome Announcements, vol. 5, no. 20, ​2017, , ​doi: 10.1128/genomeA.00367-17. 
    ​Details  DOI 
  • 2017 | Journal Article
    ​ ​Poehlein, Anja, et al. "First Insights into the Genome Sequence of the Cellulolytic Bacterium Clostridium hungatei DSM 14427​." ​Genome Announcements, vol. 5, no. 20, ​2017, , ​doi: 10.1128/genomeA.00363-17. 
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  • 2017 | Journal Article
    ​ ​Poehlein, Anja, et al. "First Insights into the Genome Sequence of the Alkaliphilic Thermotolerant Bacterium Clostridium thermoalcaliphilum JW/YL23-2T​." ​Genome Announcements, vol. 5, no. 20, ​2017, , ​doi: 10.1128/genomeA.00368-17. 
    ​Details  DOI 
  • 2017 | Journal Article
    ​ ​Braun, Christoph, et al. "Genetic Variability of Myxoma Virus Genomes​." ​Journal of Virology, vol. 91, no. 4, ​2017, , ​doi: 10.1128/JVI.01570-16. 
    ​Details  DOI 
  • 2017 | Journal Article
    ​ ​Humphreys, Jonathan R., Rolf Daniel, and Anja Poehlein. "Insights into the Genome of the Anaerobic Acetogen Sporomusa silvacetica DSM 10669​." ​Genome Announcements, vol. 5, no. 38, ​2017, , ​doi: 10.1128/genomeA.00983-17. 
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  • 2017 | Journal Article
    ​ ​Reyes, Carolina, et al. "Potentially Active Iron, Sulfur, and Sulfate Reducing Bacteria in Skagerrak and Bothnian Bay Sediments​." ​Geomicrobiology Journal, vol. 34, no. 10, ​2017, pp. 840​-850​, ​doi: 10.1080/01490451.2017.1281360. 
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  • 2017 | Journal Article
    ​ ​Peters, Björn, et al. "Expression of membrane-bound dehydrogenases from a mother of vinegar metagenome in Gluconobacter oxydans​." ​Applied Microbiology and Biotechnology, vol. 101, no. 21, ​2017, pp. 7901​-7912​, ​doi: 10.1007/s00253-017-8479-y. 
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  • 2017 | Journal Article
    ​ ​Ammer, Christian, et al. "Waldbewirtschaftung und Biodiversität: Vielfalt ist gefragt​." ​AFZ, der Wald, vol. 72, no. 17, ​2017, pp. 20​-25​. ​
    ​Details 
  • 2017 | Journal Article | 
    ​ ​Hollensteiner, Jacqueline, et al. "Bacillus thuringiensis and Bacillus weihenstephanensis Inhibit the Growth of Phytopathogenic Verticillium Species​." ​Frontiers in Microbiology, vol. 7, ​2017, , ​doi: 10.3389/fmicb.2016.02171. 
    ​Details  DOI  WoS 
  • 2017 | Journal Article | 
    ​ ​Wübbeler, Jan Hendrik, et al. "Sphingomonas jeddahensis sp. nov., isolated from Saudi Arabian desert soil​." ​International Journal of Systematic and Evolutionary Microbiology, vol. 67, no. 10, ​2017, pp. 4057​-4063​, ​doi: 10.1099/ijsem.0.002249. 
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  • 2017 | Journal Article | Erratum | 
    ​ ​Poehlein, Anja, et al. "Erratum: Proposal for the reclassification of obligately purine-fermenting bacteria Clostridium acidurici (Barker 1938) and Clostridium purinilyticum (Dürre et al. 1981) as Gottschalkia acidurici gen. nov. comb. nov. and Gottschalkia purinilytica comb. nov. and of Eubacterium angustum (Beuscher and Andreesen 1985) as Andreesenia angusta gen. nov. comb. nov. in the family Gottschalkiaceae fam. nov.​." ​International Journal of Systematic and Evolutionary Microbiology, vol. 67, no. 10, ​2017, pp. 4287​-4288​, ​doi: 10.1099/ijsem.0.002362. 
    ​Details  DOI 
  • 2017 | Journal Article | 
    ​ ​Poehlein, Anja, et al. "Proposal for the reclassification of obligately purine-fermenting bacteria Clostridium acidurici (Barker 1938) and Clostridium purinilyticum (Dürre et al. 1981) as Gottschalkia acidurici gen. nov. comb. nov. and Gottschalkia purinilytica comb. nov. and of Eubacterium angustum (Beuscher and Andreesen 1985) as Andreesenia angusta gen. nov. comb. nov. in the family Gottschalkiaceae fam. nov.​." ​International Journal of Systematic and Evolutionary Microbiology, vol. 67, no. 8, ​2017, pp. 2711​-2719​, ​doi: 10.1099/ijsem.0.002008. 
    ​Details  DOI 
  • 2017 | Journal Article | 
    ​ ​Wemheuer, Franziska, et al. "Bacterial endophyte communities of three agricultural important grass species differ in their response towards management regimes​." ​Scientific Reports, vol. 7, ​2017, , ​doi: 10.1038/srep40914. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2017 | Journal Article
    ​ ​Wemheuer, Franziska, et al. "Draft Genome Sequence of Pseudomonas putida Strain GM4FR, an Endophytic Bacterium Isolated from Festuca rubra L​." ​Genome Announcements, vol. 5, no. 13, ​2017, , ​doi: 10.1128/genomeA.00086-17. 
    ​Details  DOI  PMID  PMC 
  • 2017 | Book Chapter
    ​ ​Schneider, Dominik, et al. "Extraction of Total DNA and RNA from Marine Filter Samples and Generation of a cDNA as Universal Template for Marker Gene Studies​." ​Metagenomics. Methods in Molecular Biology, edited by W. Streit, R. Daniel, vol. 1539, ​Humana Press, ​2017, pp. 13​-22​. ​doi: 10.1007/978-1-4939-6691-2_2. 
    ​Details  DOI  PMID  PMC 
  • 2017 | Book Chapter
    ​ ​Wemheuer, Bernd, and Franziska Wemheuer. "Assessing Bacterial and Fungal Diversity in the Plant Endosphere​." ​Metagenomics. Methods in Molecular Biology, edited by W. Streit, R. Daniel, vol. 1539, ​Humana Press, ​2017, pp. 75​-84​. ​doi: 10.1007/978-1-4939-6691-2_6. 
    ​Details  DOI  PMID  PMC 
  • 2017 | Journal Article
    ​ ​Dogs, Marco, et al. "Rhodobacteraceae on the marine brown alga Fucus spiralis are abundant and show physiological adaptation to an epiphytic lifestyle​." ​Systematic and Applied Microbiology, vol. 40, no. 6, ​2017, pp. 370​-382​, ​doi: 10.1016/j.syapm.2017.05.006. 
    ​Details  DOI  PMID  PMC 
  • 2017 | Journal Article | 
    ​ ​Wemheuer, Bernd, et al. "Linking Compositional and Functional Predictions to Decipher the Biogeochemical Significance in DFAA Turnover of Abundant Bacterioplankton Lineages in the North Sea.​." ​Microorganisms, vol. 5, no. 4, ​2017, , ​doi: 10.3390/microorganisms5040068. 
    ​Details  DOI  PMID  PMC 
  • 2017 | Journal Article | 
    ​ ​Woehlbrand, Lars, et al. "Complementary Metaproteomic Approaches to Assess the Bacterioplankton Response toward a Phytoplankton Spring Bloom in the Southern North Sea​." ​Frontiers in Microbiology, vol. 8, ​2017, , ​doi: 10.3389/fmicb.2017.00442. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2017 | Journal Article
    ​ ​Hollensteiner, Jacqueline, et al. "Draft Genome Sequence of Bacillus pumilus Strain GM3FR, an Endophyte Isolated from Aerial Plant Tissues of Festuca rubra L​." ​Genome Announcements, vol. 5, no. 13, ​2017, , ​doi: 10.1128/genomeA.00085-17. 
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  • 2017 | Journal Article | Research Paper
    ​ ​Barnes, Andrew D., et al. "Direct and cascading impacts of tropical land-use change on multi-trophic biodiversity​." ​Nature Ecology & Evolution, vol. 1, no. 10, ​2017, pp. 1511​-1519​, ​doi: 10.1038/s41559-017-0275-7. 
    ​Details  DOI  PMID  PMC 
  • 2017 | Journal Article | Research Paper | 
    ​ ​Granzow, Sandra, et al. "The Effects of Cropping Regimes on Fungal and Bacterial Communities of Wheat and Faba Bean in a Greenhouse Pot Experiment Differ between Plant Species and Compartment​." ​Frontiers in Microbiology, vol. 8, ​2017, , ​doi: 10.3389/fmicb.2017.00902. 
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  • 2016 | Conference Paper
    ​ ​Tiede, Julia, et al. "Plant diversity affects multitrophic interactions in an experimental grassland​." ​150 years of Ecology - lessons for the future, ​Gesellschaft für Ökologie, ​2016, pp. 295​-295​. ​
    ​Details 
  • 2016 | Journal Article
    ​ ​Poehlein, Anja, et al. "Complete Genome Sequence of the Amino Acid-Fermenting Clostridium propionicum X2 (DSM 1682)​." ​Genome Announcements, vol. 4, no. 2, ​2016, , ​doi: 10.1128/genomeA.00294-16. 
    ​Details  DOI 
  • 2016 | Journal Article
    ​ ​Poehlein, Anja, et al. "First Insights into the Genome Sequence of the Halophilic Archaeon Halalkalicoccus paucihalophilus (DSM 24557)​." ​Genome Announcements, vol. 4, no. 3, ​2016, , ​doi: 10.1128/genomeA.00382-16. 
    ​Details  DOI 
  • 2016 | Journal Article
    ​ ​Poehlein, Anja, et al. "First Insights into the Draft Genome of Clostridium colicanis DSM 13634, Isolated from Canine Feces​." ​Genome Announcements, vol. 4, no. 3, ​2016, , ​doi: 10.1128/genomeA.00385-16. 
    ​Details  DOI 
  • 2016 | Journal Article
    ​ ​Leimbach, Andreas, et al. "Whole-Genome Draft Sequences of Six Commensal Fecal and Six Mastitis-Associated Escherichia coli Strains of Bovine Origin: TABLE 1​." ​Genome Announcements, vol. 4, no. 4, ​2016, , ​doi: 10.1128/genomeA.00753-16. 
    ​Details  DOI 
  • 2016 | Journal Article
    ​ ​Reuß, Daniel R., et al. "Complete Genome Sequence of Bacillus subtilis subsp. subtilis Strain ∆6​." ​Genome Announcements, vol. 4, no. 4, ​2016, , ​doi: 10.1128/genomeA.00759-16. 
    ​Details  DOI 
  • 2016 | Journal Article
    ​ ​Poehlein, Anja, et al. "Genome Sequence of the Acetogenic Bacterium Acetobacterium wieringae DSM 1911 T​." ​Genome Announcements, vol. 4, no. 6, ​2016, , ​doi: 10.1128/genomeA.01430-16. 
    ​Details  DOI 
  • 2016 | Journal Article
    ​ ​Jag, Vanessa, et al. "Genome Sequence of the Facultative Anaerobe Oerskovia enterophila DFA-19 (DSM 43852 T )​." ​Genome Announcements, vol. 4, no. 5, ​2016, , ​doi: 10.1128/genomeA.00973-16. 
    ​Details  DOI 
  • 2016 | Journal Article
    ​ ​Uhlig, Ronny, et al. "Genome Sequence of the Autotrophic Acetogen Clostridium magnum DSM 2767​." ​Genome Announcements, vol. 4, no. 3, ​2016, , ​doi: 10.1128/genomeA.00464-16. 
    ​Details  DOI 
  • 2016 | Journal Article
    ​ ​Domik, Dajana, et al. "A Terpene Synthase Is Involved in the Synthesis of the Volatile Organic Compound Sodorifen of Serratia plymuthica 4Rx13​." ​Frontiers in Microbiology, vol. 7, ​2016, , ​doi: 10.3389/fmicb.2016.00737. 
    ​Details  DOI 
  • 2016 | Journal Article
    ​ ​Flüchter, Sebastian, et al. "Genome Sequence of the Poly-3-Hydroxybutyrate Producer Clostridium acetireducens DSM 10703​." ​Genome Announcements, vol. 4, no. 6, ​2016, , ​doi: 10.1128/genomeA.01399-16. 
    ​Details  DOI 
  • 2016 | Journal Article
    ​ ​Bengelsdorf, Frank R., et al. "Genome Sequence of the Acetogenic Bacterium Butyribacterium methylotrophicum DSM 3468 T​." ​Genome Announcements, vol. 4, no. 6, ​2016, , ​doi: 10.1128/genomeA.01338-16. 
    ​Details  DOI 
  • 2016 | Journal Article
    ​ ​Beck, Matthias H., et al. "Draft Genome Sequence of the Strict Anaerobe Clostridium neopropionicum X4 (DSM 3847 T )​." ​Genome Announcements, vol. 4, no. 2, ​2016, , ​doi: 10.1128/genomeA.00209-16. 
    ​Details  DOI 
  • 2016 | Journal Article
    ​ ​Poehlein, Anja, et al. "First Insights into the Genome of the Moderately Thermophilic Bacterium Clostridium tepidiprofundi SG 508 T​." ​Genome Announcements, vol. 4, no. 3, ​2016, , ​doi: 10.1128/genomeA.00379-16. 
    ​Details  DOI 
  • 2016 | Journal Article
    ​ ​Kanukollu, Saranya, et al. "Distinct compositions of free-living, particle-associated and benthic communities of the Roseobacter group in the North Sea​." ​FEMS Microbiology Ecology, vol. 92, no. 1, ​2016, , ​doi: 10.1093/femsec/fiv145. 
    ​Details  DOI  WoS 
  • 2016 | Journal Article | Research Paper | 
    ​ ​Clough, Yann, et al. "Land-use choices follow profitability at the expense of ecological functions in Indonesian smallholder landscapes​." ​Nature Communications, vol. 7, ​2016, pp. 1​-12​, ​doi: 10.1038/ncomms13137. 
    ​Details  DOI 
  • 2016 | Journal Article | 
    ​ ​Tiede, Julia, et al. "Trophic and Non-Trophic Interactions in a Biodiversity Experiment Assessed by Next-Generation Sequencing​." ​PLOS ONE, vol. 11, no. 2, ​2016, , ​doi: 10.1371/journal.pone.0148781. 
    ​Details  DOI  PMID  PMC 
  • 2016 | Journal Article | 
    ​ ​Osterholz, Helena, et al. "Deciphering associations between dissolved organic molecules and bacterial communities in a pelagic marine system​." ​The ISME Journal, vol. 10, no. 7, ​2016, pp. 1717​-1730​, ​doi: 10.1038/ismej.2015.231. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2016 | Journal Article | 
    ​ ​Kaiser, Kristin, et al. "Driving forces of soil bacterial community structure, diversity, and function in temperate grasslands and forests​." ​Scientific Reports, vol. 6, ​2016, , ​doi: 10.1038/srep33696. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2016 | Journal Article | 
    ​ ​Poehlein, Anja, et al. "Genome sequence of Shinella sp strain DD12, isolated from homogenized guts of starved Daphnia magna​." ​Standards in Genomic Sciences, vol. 11, ​2016, , ​doi: 10.1186/s40793-015-0129-3. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2016 | Journal Article | 
    ​ ​Güllert, Simon, et al. "Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies​." ​Biotechnology for Biofuels, vol. 9, ​2016, , ​doi: 10.1186/s13068-016-0534-x. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2016 | Journal Article
    ​ ​Wüst, Pia K., et al. "Estimates of Soil Bacterial Ribosome Content and Diversity Are Significantly Affected by the Nucleic Acid Extraction Method Employed​." ​Applied and Environmental Microbiology, vol. 82, no. 9, ​2016, pp. 2595​-2607​, ​doi: 10.1128/AEM.00019-16. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2016 | Journal Article
    ​ ​Billerbeck, Sara, et al. "Biogeography and environmental genomics of the Roseobacter-affiliated pelagic CHAB-I-5 lineage​." ​Nature Microbiology, vol. 1, no. 7, ​2016, , ​doi: 10.1038/nmicrobiol.2016.63. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2016 | Journal Article
    ​ ​Röttig, Annika, et al. "Role of Wax Ester Synthase/Acyl Coenzyme A:Diacylglycerol Acyltransferase in Oleaginous Streptomyces sp. Strain G25​." ​Applied and Environmental Microbiology, vol. 82, no. 19, ​2016, pp. 5969​-5981​, ​doi: 10.1128/AEM.01719-16. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2015 | Conference Abstract
    ​ ​Rybalka, Nataliya, et al. "MICROALGAE COMMUNITIES IN ANTARCTIC SOILS: CHANGES ALONG SOIL DEVELOPMENTAL STAGES AND TESTING FOR GEOGRAPHICAL DISTRIBUTION​." ​European Journal of Phycology, vol. 50, ​2015, . ​
    ​Details  WoS 
  • 2015 | Journal Article
    ​ ​Schneider, Dominik, et al. "Metagenomic and Metatranscriptomic Analyses of Bacterial Communities Derived From a Calcifying Karst Water Creek Biofilm and Tufa​." ​Geomicrobiology Journal, vol. 32, no. 3-4, ​2015, pp. 316​-331​, ​doi: 10.1080/01490451.2014.907376. 
    ​Details  DOI  WoS 
  • 2015 | Journal Article
    ​ ​Voget, Sonja, et al. "Complete genome sequence of the lipase producing strain Burkholderia glumae PG1​." ​Journal of Biotechnology, vol. 204, ​2015, pp. 3​-4​, ​doi: 10.1016/j.jbiotec.2015.03.022. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2015 | Journal Article | 
    ​ ​Poehlein, Anja, Rolf Daniel, and Diliana Dancheva Simeonova. "Genome sequence of Pedobacter glucosidilyticus DD6b, isolated from zooplankton Daphnia magna​." ​Standards in Genomic Sciences, vol. 10, ​2015, , ​doi: 10.1186/s40793-015-0086-x. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2015 | Journal Article
    ​ ​Wietz, Matthias, et al. "Bacterial community dynamics during polysaccharide degradation at contrasting sites in the Southern and Atlantic Oceans​." ​Environmental Microbiology, vol. 17, no. 10, ​2015, pp. 3822​-3831​, ​doi: 10.1111/1462-2920.12842. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2015 | Journal Article | 
    ​ ​Herzog, Sarah, et al. "Effects of Fertilization and Sampling Time on Composition and Diversity of Entire and Active Bacterial Communities in German Grassland Soils​." ​PLoS ONE, vol. 10, no. 12, ​2015, , ​doi: 10.1371/journal.pone.0145575. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2015 | Journal Article | 
    ​ ​Voget, Sonja, et al. "Adaptation of an abundant Roseobacter RCA organism to pelagic systems revealed by genomic and transcriptomic analyses​." ​The ISME Journal, vol. 9, no. 2, ​2015, pp. 371​-384​, ​doi: 10.1038/ismej.2014.134. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2015 | Journal Article | 
    ​ ​Aßhauer, Kathrin Petra, et al. "Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data​." ​Bioinformatics, vol. 31, no. 17, ​2015, pp. 2882​-2884​, ​doi: 10.1093/bioinformatics/btv287. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2015 | Journal Article | 
    ​ ​Wemheuer, Bernd, et al. "The green impact: bacterioplankton response toward a phytoplankton spring bloom in the southern North Sea assessed by comparative metagenomic and metatranscriptomic approaches​." ​Frontiers in Microbiology, vol. 6, ​2015, , ​doi: 10.3389/fmicb.2015.00805. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2014 | Conference Paper
    ​ ​Wietz, Matthias, et al. "Community-level, physiological and genomic characterization of polysaccharide degradation by bacterioplankton from the Southern and Atlantic Oceans​." ​Gordon Research Conference ‘Marine Microbes’ and ISME-15, Bentley, USA / Seoul, Korea, 2014-06-22 - 2014-06-27​2014. doi: 10.13140/2.1.4778.7527. 
    ​Details  DOI 
  • 2014 | Journal Article | 
    ​ ​Ilmberger, Nele, et al. "A Comparative Metagenome Survey of the Fecal Microbiota of a Breast- and a Plant-Fed Asian Elephant Reveals an Unexpectedly High Diversity of Glycoside Hydrolase Family Enzymes​." ​PLoS One, vol. 9, no. 9, ​2014, , ​doi: 10.1371/journal.pone.0106707. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2014 | Journal Article
    ​ ​Wemheuer, Bernd, et al. "Impact of a phytoplankton bloom on the diversity of the active bacterial community in the southern North Sea as revealed by metatranscriptomic approaches​." ​FEMS Microbiology Ecology, vol. 87, no. 2, ​2014, pp. 378​-389​, ​doi: 10.1111/1574-6941.12230. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2014 | Journal Article | 
    ​ ​Djukic, Marvin, et al. "How to Kill the Honey Bee Larva: Genomic Potential and Virulence Mechanisms of Paenibacillus larvae​." ​PLoS ONE, vol. 9, no. 3, ​2014, , ​doi: 10.1371/journal.pone.0090914. 
    ​Details  DOI  PMID  PMC 
  • 2014 | Journal Article | 
    ​ ​Hess, Verena, et al. "A genome-guided analysis of energy conservation in the thermophilic, cytochrome-free acetogenic bacterium Thermoanaerobacter kivui​." ​BMC Genomics, vol. 15, ​2014, , ​doi: 10.1186/1471-2164-15-1139. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2013 | Journal Article
    ​ ​Mientus, Markus, et al. "Thermostable Xylanase and β-Glucanase Derived from the Metagenome of the Avachinsky Crater in Kamchatka (Russia)​." ​Current Biotechnology, vol. 2, no. 4, ​2013, pp. 284​-293​, ​doi: 10.2174/2211550102999131128150257. 
    ​Details  DOI 
  • 2013 | Journal Article
    ​ ​Cesarz, Simone, et al. "Roots from beech (Fagus sylvatica L.) and ash (Fraxinus excelsior L.) differentially affect soil microorganisms and carbon dynamics​." ​Soil Biology and Biochemistry, vol. 61, ​2013, pp. 23​-32​, ​doi: 10.1016/j.soilbio.2013.02.003. 
    ​Details  DOI 
  • 2013 | Journal Article | 
    ​ ​Wemheuer, Bernd, et al. "Microbial Diversity and Biochemical Potential Encoded by Thermal Spring Metagenomes Derived from the Kamchatka Peninsula​." ​Archaea, ​2013, , ​doi: 10.1155/2013/136714. 
    ​Details  DOI  WoS 
  • 2013 | Journal Article
    ​ ​Blumenberg, Martin, et al. "Bacteriohopanepolyols in a stratified cyanobacterial mat from Kiritimati (Christmas Island, Kiribati)​." ​Organic Geochemistry, vol. 55, ​2013, pp. 55​-62​, ​doi: 10.1016/j.orggeochem.2012.11.004. 
    ​Details  DOI  WoS 
  • 2013 | Journal Article
    ​ ​Sahm, Kerstin, et al. "High abundance of heterotrophic prokaryotes in hydrothermal springs of the Azores as revealed by a network of 16S rRNA gene-based methods​." ​Extremophiles, vol. 17, no. 4, ​2013, pp. 649​-662​, ​doi: 10.1007/s00792-013-0548-2. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2013 | Journal Article
    ​ ​Krohn-Molt, Ines, et al. "Metagenome Survey of a Multispecies and Alga-Associated Biofilm Revealed Key Elements of Bacterial-Algal Interactions in Photobioreactors​." ​Applied and Environmental Microbiology, vol. 79, no. 20, ​2013, pp. 6196​-6206​, ​doi: 10.1128/AEM.01641-13. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2013 | Journal Article | 
    ​ ​Schneider, Dominik, et al. "Phylogenetic Analysis of a Microbialite-Forming Microbial Mat from a Hypersaline Lake of the Kiritimati Atoll, Central Pacific​." ​PLoS ONE, vol. 8, no. 6, ​2013, , ​doi: 10.1371/journal.pone.0066662. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2012 | Journal Article | 
    ​ ​Birkhofer, Klaus, et al. "General Relationships between Abiotic Soil Properties and Soil Biota across Spatial Scales and Different Land-Use Types​." ​PLoS ONE, vol. 7, no. 8, ​2012, pp. 1​-8​, ​doi: 10.1371/journal.pone.0043292. 
    ​Details  DOI 
  • 2012 | Journal Article | 
    ​ ​Danielsen, Lara, et al. "Fungal soil communities in a young transgenic poplar plantation form a rich reservoir for fungal root communities​." ​Ecology and Evolution, vol. 2, no. 8, ​2012, pp. 1935​-1948​, ​doi: 10.1002/ece3.305. 
    ​Details  DOI 
  • 2012 | Journal Article | 
    ​ ​Wemheuer, Bernd, Franziska Wemheuer, and Rolf Daniel. "RNA-Based Assessment of Diversity and Composition of Active Archaeal Communities in the German Bight​." ​Archaea, ​2012, , ​doi: 10.1155/2012/695826. 
    ​Details  DOI  WoS 
  • 2012 | Journal Article
    ​ ​Djukic, Marvin, et al. "Genome Sequence of Paenibacillus alvei DSM 29, a Secondary Invader during European Foulbrood Outbreaks​." ​Journal of Bacteriology, vol. 194, no. 22, ​2012, , ​doi: 10.1128/JB.01698-12. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2012 | Journal Article
    ​ ​Brzuszkiewicz, Elzbieta B., et al. "Complete Genome Sequence of the B-12-Producing Shimwellia blattae Strain DSM 4481, Isolated from a Cockroach​." ​Journal of Bacteriology, vol. 194, no. 16, ​2012, , ​doi: 10.1128/JB.00829-12. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2012 | Journal Article
    ​ ​Schuldes, Jörg, et al. "Complete Genome Sequence of the Broad-Host-Range Strain Sinorhizobium fredii USDA257​." ​Journal of Bacteriology, vol. 194, no. 16, ​2012, , ​doi: 10.1128/JB.00966-12. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2011 | Journal Article
    ​ ​Voget, Sonja, et al. "Complete Genome Sequence of Carnobacterium sp 17-4​." ​Journal of Bacteriology, vol. 193, no. 13, ​2011, pp. 3403​-3404​, ​doi: 10.1128/JB.05113-11. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2011 | Journal Article
    ​ ​Poehlein, Anja, et al. "Complete Genome Sequence of the Type Strain Cupriavidus necator N-1​." ​Journal of Bacteriology, vol. 193, no. 18, ​2011, , ​doi: 10.1128/JB.05660-11. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2011 | Journal Article
    ​ ​Djukic, Marvin, et al. "Genome Sequence of Brevibacillus laterosporus LMG 15441, a Pathogen of Invertebrates​." ​Journal of Bacteriology, vol. 193, no. 19, ​2011, pp. 5535​-5536​, ​doi: 10.1128/JB.05696-11. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2011 | Journal Article
    ​ ​Volland, Sonja, et al. "Complete Genome Sequences of the Chemolithoautotrophic Oligotropha carboxidovorans Strains OM4 and OM5​." ​Journal of Bacteriology, vol. 193, no. 18, ​2011, , ​doi: 10.1128/JB.05619-11. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2010 | Journal Article
    ​ ​Schreiber, Fabian, et al. "Treephyler: fast taxonomic profiling of metagenomes​." ​Bioinformatics, vol. 26, no. 7, ​2010, pp. 960​-961​, ​doi: 10.1093/bioinformatics/btq070. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2010 | Journal Article
    ​ ​Angelov, Angel, et al. "Genome Sequence of the Polysaccharide-Degrading, Thermophilic Anaerobe Spirochaeta thermophila DSM 6192​." ​Journal of Bacteriology, vol. 192, no. 24, ​2010, pp. 6492​-6493​, ​doi: 10.1128/JB.01023-10. 
    ​Details  DOI  PMID  PMC  WoS 
  • 2009 | Journal Article
    ​ ​Simon, Carola, et al. "Rapid Identification of Genes Encoding DNA Polymerases by Function-Based Screening of Metagenomic Libraries Derived from Glacial Ice​." ​Applied and Environmental Microbiology, vol. 75, no. 9, ​2009, pp. 2964​-2968​, ​doi: 10.1128/AEM.02644-08. 
    ​Details  DOI  PMID  PMC  WoS 
  • 1996 | Journal Article
    ​ ​Seyfried, M., Rolf Daniel, and Gerhard Gottschalk. "Cloning, sequencing, and overexpression of the genes encoding coenzyme B12-dependent glycerol dehydratase of Citrobacter freundii​." ​Journal of Bacteriology, vol. 178, no. 19, ​1996, pp. 5793​-5796​, ​doi: 10.1128/JB.178.19.5793-5796.1996. 
    ​Details  DOI 
  • 1992 | Journal Article
    ​ ​Daniel, Rolf, and Gerhard Gottschalk. "Growth temperature-dependent activity of glycerol dehydratase in Escherichia coli expressing the Citrobacter freundii dha regulon​." ​FEMS Microbiology Letters, vol. 100, no. 1-3, ​1992, pp. 281​-285​, ​doi: 10.1111/j.1574-6968.1992.tb14053.x. 
    ​Details  DOI  PMID  PMC 

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