SFB 1286 | A03: Dynamische Analyse der Remodellierung der extrazellulären Matrix (ECM) als Mechanismus der Synapsenorganisation und Plastizität RSS Feed


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  • 2024 | Journal Article
    ​ ​Subcellular protein turnover in human neural progenitor cells revealed by correlative electron microscopy and nanoscale secondary ion mass spectrometry imaging​
    Lork, A. A.; Rabasco, S.; Ernst, C.; du Toit, A.; Rizzoli, S. O. & Phan, N. T. N.​ (2024) 
    Chemical Science, 15(9) pp. 3311​-3322​.​ DOI: https://doi.org/10.1039/D3SC05629E 
    ​Details  DOI 
  • 2024 | Preprint
    ​ ​NanoPlex: a universal strategy for fluorescence microscopy multiplexing using nanobodies with erasable signals​
    Mougios, N.; Cotroneo, E. R.; Imse, N.; Setzke, J.; Rizzoli, S.; Simeth, N. A.& Tsukanov, R. et al.​ (2024). DOI: https://doi.org/10.1101/2024.03.18.585511 
    ​Details  DOI 
  • 2023 | Preprint
    ​ ​Age-dependent structural reorganization of utricular ribbon synapses​
    Michanski, S.; Henneck, T.; Mukhopadhyay, M.; Steyer, A. M.; Gonzalez, P. A.; Grewe, K.& Ilgen, P. et al.​ (2023). DOI: https://doi.org/10.1101/2022.12.19.521049 
    ​Details  DOI 
  • 2023 | Journal Article
    ​ ​Proteomic analysis of the human hippocampus identifies neuronal pentraxin 1 ( NPTX1 ) as synapto‐axonal target in late‐stage Parkinson's disease​
    Warth Perez Arias, C. C.; Silbern, I.; Caldi Gomes, L.; Wartmann, H.; Dambeck, V.; Fanz, J. & Neuenroth, L. et al.​ (2023) 
    Journal of Neurochemistry, 166(5) pp. 862​-874​.​ DOI: https://doi.org/10.1111/jnc.15924 
    ​Details  DOI  PMID  PMC 
  • 2023 | Journal Article
    ​ ​High-resolution analysis of bound Ca 2+ in neurons and synapses​
    Bonnin, E. A.; Golmohammadi, A.; Rehm, R.; Tetzlaff, C. & Rizzoli, S. O.​ (2023) 
    Life Science Alliance, 7(1) art. e202302030​.​ DOI: https://doi.org/10.26508/lsa.202302030 
    ​Details  DOI  PMID  PMC 
  • 2023 | Journal Article
    ​ ​Synapsin condensation controls synaptic vesicle sequestering and dynamics​
    Hoffmann, C.; Rentsch, J.; Tsunoyama, T. A.; Chhabra, A.; Aguilar Perez, G.; Chowdhury, R. & Trnka, F. et al.​ (2023) 
    Nature Communications, 14(1).​ DOI: https://doi.org/10.1038/s41467-023-42372-6 
    ​Details  DOI  PMID  PMC 
  • 2023 | Journal Article | Overview
    ​ ​The long-loop recycling (LLR) of synaptic components as a question of economics​
    Georgiev, S. & Rizzoli, S.​ (2023) 
    Molecular and Cellular Neuroscience, art. 103862​.​ DOI: https://doi.org/10.1016/j.mcn.2023.103862 
    ​Details  DOI  PMID  PMC 
  • 2023 | Journal Article
    ​ ​Age-dependent structural reorganization of utricular ribbon synapses​
    Michanski, S.; Henneck, T.; Mukhopadhyay, M.; Steyer, A. M.; Gonzalez, P. A.; Grewe, K. & Ilgen, P. et al.​ (2023) 
    Frontiers in Cell and Developmental Biology, 11 art. 1178992​.​ DOI: https://doi.org/10.3389/fcell.2023.1178992 
    ​Details  DOI  PMID  PMC 
  • 2022 | Journal Article | Overview | 
    ​ ​Extracellular Matrix Recycling as a Novel Plasticity Mechanism With a Potential Role in Disease​
    Dankovich, T. M. & Rizzoli, S. O. ​ (2022) 
    Frontiers in Cellular Neuroscience, 16.​ DOI: https://doi.org/10.3389/fncel.2022.854897 
    ​Details  DOI  PMID  PMC 
  • 2022 | Journal Article | Research Paper | 
    ​ ​An iodine-containing probe as a tool for molecular detection in secondary ion mass spectrometry​
    Kabatas Glowacki, S.; Agüi-Gonzalez, P. ; Sograte-Idrissi, S.; Jähne, S. ; Opazo Davila, L. F. ; Phan, N. T. N.   & Rizzoli, S. O. ​ (2022) 
    Chemical Communications,.​ DOI: https://doi.org/10.1039/D2CC02290G 
    ​Details  DOI 
  • 2021 | Journal Article | Research Paper | 
    ​ ​Differences in synaptic vesicle pool behavior between male and female hippocampal cultured neurons​
    Sertel, S. M.; Blumenstein, W.; Mandad, S.; Shomroni, O.; Salinas, G. & Rizzoli, S. O.​ (2021) 
    Scientific Reports, 11(1) art. 17374​.​ DOI: https://doi.org/10.1038/s41598-021-96846-y 
    ​Details  DOI  PMID  PMC 
  • 2021 | Journal Article | Research Paper
    ​ ​A large-scale nanoscopy and biochemistry analysis of postsynaptic dendritic spines​
    Helm, M. S.; Dankovich, T. M.; Mandad, S. ; Rammner, B.; Jähne, S. ; Salimi, V. & Koerbs, C. et al.​ (2021) 
    Nature Neuroscience, 24(8) pp. 1151​-1162​.​ DOI: https://doi.org/10.1038/s41593-021-00874-w 
    ​Details  DOI  PMID  PMC 
  • 2021 | Journal Article | Research Paper | 
    ​ ​Presynaptic activity and protein turnover are correlated at the single-synapse level​
    Jähne, S. ; Mikulasch, F.; Heuer, H. G.; Truckenbrodt, S.; Agüi-Gonzalez, P. ; Grewe, K. & Vogts, A. et al.​ (2021) 
    Cell Reports, 34(11) pp. 108841​.​ DOI: https://doi.org/10.1016/j.celrep.2021.108841 
    ​Details  DOI  PMID  PMC 
  • 2021 | Journal Article | Research Paper | 
    ​ ​Protein Phosphorylation in Depolarized Synaptosomes: Dissecting Primary Effects of Calcium from Synaptic Vesicle Cycling​
    Silbern, I.; Pan, K.-T.; Fiosins, M.; Bonn, S. ; Rizzoli, S. O. ; Fornasiero, E. F.   & Urlaub, H.  et al.​ (2021) 
    Molecular & Cellular Proteomics, 20 pp. 100061​.​ DOI: https://doi.org/10.1016/j.mcpro.2021.100061 
    ​Details  DOI  PMID  PMC 
  • 2021 | Journal Article | Research Paper | 
    ​ ​Extracellular matrix remodeling through endocytosis and resurfacing of Tenascin-R​
    Dankovich, T. M.; Kaushik, R.; Olsthoorn, L. H. M.; Petersen, G. C.; Giro, P. E.; Kluever, V. & Agüi-Gonzalez, P.  et al.​ (2021) 
    Nature Communications, 12(1) art. 7129​.​ DOI: https://doi.org/10.1038/s41467-021-27462-7 
    ​Details  DOI  PMID  PMC 
  • 2021 | Journal Article | 
    ​ ​Gold-Conjugated Nanobodies for Targeted Imaging Using High-Resolution Secondary Ion Mass Spectrometry​
    Agüi-Gonzalez, P. ; Dankovich, T. M.; Rizzoli, S. O.   & Phan, N. T. N. ​ (2021) 
    Nanomaterials, 11(7) pp. 1797​.​ DOI: https://doi.org/10.3390/nano11071797 
    ​Details  DOI  PMID  PMC 
  • 2021 | Journal Article | Overview | 
    ​ ​Challenges facing quantitative large-scale optical super-resolution, and some simple solutions​
    Dankovich, T. M. & Rizzoli, S. O. ​ (2021) 
    iScience, 24(3) pp. 102134​.​ DOI: https://doi.org/10.1016/j.isci.2021.102134 
    ​Details  DOI  PMID  PMC 
  • 2021 | Journal Article | Research Paper
    ​ ​The mRNA-Binding Protein RBM3 Regulates Activity Patterns and Local Synaptic Translation in Cultured Hippocampal Neurons​
    Sertel, S. M.; von Elling-Tammen, M. S. & Rizzoli, S. O. ​ (2021) 
    The Journal of Neuroscience, 41(6) pp. 1157​-1173​.​ DOI: https://doi.org/10.1523/JNEUROSCI.0921-20.2020 
    ​Details  DOI  PMID  PMC 
  • 2020 | Preprint
    ​ ​Local translation in synaptic mitochondria influences synaptic transmission​
    Yousefi, R.; Fornasiero, E. F.; Cyganek, L.; Jakobs, S. ; Rizzoli, S. O. ; Rehling, P.  & Pacheu-Grau, D.​ (2020). DOI: https://doi.org/10.1101/2020.07.22.215194 
    ​Details  DOI 
  • 2020 | Preprint
    ​ ​Extracellular matrix remodeling through endocytosis and resurfacing of Tenascin-R​
    Dankovich, T. M.; Kaushik, R.; Petersen, G. C.; Giro, P. E.; Hadi, H. A.; Bao, G.& Beuermann, S. et al.​ (2020). DOI: https://doi.org/10.1101/2020.11.11.377515 
    ​Details  DOI 
  • 2020 | Journal Article | Research Paper | 
    ​ ​A nanobody-based fluorescent reporter reveals human α-synuclein in the cell cytosol​
    Gerdes, C.; Waal, N.; Offner, T.; Fornasiero, E. F. ; Wender, N.; Verbarg, H. & Manzini, I. et al.​ (2020) 
    Nature Communications, 11(1).​ DOI: https://doi.org/10.1038/s41467-020-16575-0 
    ​Details  DOI  PMID  PMC 
  • 2019 | Journal Article | Research Paper
    ​ ​A mass spectrometry workflow for measuring protein turnover rates in vivo​
    Alevra, M.; Mandad, S. ; Ischebeck, T. ; Urlaub, H. ; Rizzoli, S. O.   & Fornasiero, E. F. ​ (2019) 
    Nature Protocols, 14(12) pp. 3333​-3365​.​ DOI: https://doi.org/10.1038/s41596-019-0222-y 
    ​Details  DOI  PMID  PMC 
  • 2019 | Journal Article | Research Paper | 
    ​ ​Nanobodies reveal an extra-synaptic population of SNAP-25 and Syntaxin 1A in hippocampal neurons.​
    Maidorn, M.; Olichon, A.; Rizzoli, S. O.   & Opazo, F.​ (2019) 
    mAbs, 11(2) pp. 305​-321​.​ DOI: https://doi.org/10.1080/19420862.2018.1551675 
    ​Details  DOI  PMID  PMC 
  • 2018 | Journal Article | Research Paper
    ​ ​Kollaboratives Forschungszentrum (Sonderforschungsbereich, SFB) 1286 „Quantitative Synaptologie“​
    Schubert, K. & Rizzoli, S. O. ​ (2018) 
    Neuroforum, 24(2) pp. 135​-140​.​ DOI: https://doi.org/10.1515/nf-2017-0056 
    ​Details  DOI 
  • 2018 | Journal Article | Research Paper | 
    ​ ​WDR1 is a novel EYA3 substrate and its dephosphorylation induces modifications of the cellular actin cytoskeleton​
    Mentel, M.; Ionescu, A. E.; Puscalau-Girtu, I.; Helm, M. S.; Badea, R. A.; Rizzoli, S. O.   & Szedlacsek, S. E.​ (2018) 
    Scientific Reports, 8(1) art. 2910​.​ DOI: https://doi.org/10.1038/s41598-018-21155-w 
    ​Details  DOI 
  • 2018 | Journal Article | Research Paper | 
    ​ ​Precisely measured protein lifetimes in the mouse brain reveal differences across tissues and subcellular fractions.​
    Fornasiero, E. F.; Mandad, S.; Wildhagen, H.; Alevra, M.; Rammner, B.; Keihani, S. & Opazo, F. et al.​ (2018) 
    Nature Communications, 9(1) art. 4230​.​ DOI: https://doi.org/10.1038/s41467-018-06519-0 
    ​Details  DOI  PMID  PMC 
  • 2018 | Journal Article | Research Paper | 
    ​ ​Newly produced synaptic vesicle proteins are preferentially used in synaptic transmission​
    Truckenbrodt, S.; Viplav, A.; Jähne, S. ; Vogts, A.; Denker, A.; Wildhagen, H. & Fornasiero, E. F  et al.​ (2018) 
    The EMBO Journal, 37(15).​ DOI: https://doi.org/10.15252/embj.201798044 
    ​Details  DOI  PMID  PMC 

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